Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAGTTCAGATTGGGTCAGTTTTTAACAGCTCTGACTAGAAGTACATTGTTGGTTCTGTATTAACTTTGTGGGTATTGCAGAAGAATCCAGCAAAATAACGACACACGAGGTTGTGTAATATCACCATCAACATCCTATTTTCATCTCTTGAGAAACTCCTATCTTGAAGACACAAGATAAACAAAAGGGAGCTGAATTGTCAGTTACCTCAGAGCATTTTCTGTCAACAAAACCCAACATTATTTACTCCTACCCAACGACAACACAACATGTTACCATCTTTATACCAAGTACAAAATTGATATTATATTTCCTAGCTAGAAATTAATTAAGGTGGAAGAACAATAATAACAGTACAATACAAAACAATGGAGGTTGGAGTTGGGCTTGAGAGAGTTGTAGGAAGATCATCAACAAGTGAGAGATTTGAAATTAGTCCCGCGAAATTAGCATCAAATCTCAAAATTAGTCGTCATAATAGACATGAACAACAACATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACATCACCCAGTAAACAGGTCATTGAAGATGTTCAACAAGGTTCAAGTTGTGTATTATCTCACTCGAAATGGCCACCTTGAACATCCTCATTTTATCGAGGTTCCCCACTTGGCCACACAACCTCTTCGCCTCAAAGGTACATACAAACATACACTACTCCACATCTCCGTTGTTTATTATTATCTGACCGCTTAACTAACTTAATTGGCACATGATATAGATGTGGTAGACAGACTAACGTTACTCAGAGGGAAAGCTATGCCTTGTCAATATTCATGGTCATGTAAAAGGTATCACTAACCCACTATTTAGCTATGTACTCTGCTTAGCTAATACGGAATATAAACCTACATTAATTATATGTTGCTGTTAATTGTGTAATTATGTTAAATTGTATACTTGGTATGTAGGAGCTATAAGAATGGATATGTATGGAATGACTTGACGGAGAATGACGTCATTTATGCCACCGAAGGATCCGAATATGTGCTCAAAGGCTCTGAACTCGTACAAGATAGGGATCACTATTCTGGTTAGTCATCACTTGCAACTTAAAAGCTATGAGACCGTAACATTATCATGTGGTGTTAATTGTTAAAGTACATTGTATGCATAACTTTTGTTTTCAGTGAAACAATAATCCTAGGAAACTAGTAAAGACCAAAGTTTATGGTATTTTGCACCTAATTTTGATACTGCTTACACTTAAATTTAGTAAGGAGCTTCTATATTTAAGTATGCTGAAATCTGTTTGTCAGTTAATTGTTAGTTTCTGCTGGTTTTAGCTAGTTAAAACTATGAATATTGATACCATTTTGTAACACCCCAACTTACTAACTATAGAAATAAATAACAAAAGTATAAAAGACTTTATAAAAATGACAATGGCTACATTAATTTTGTAGCCACTATAAACTTTTAATCTAGACCATTTATATAGATATGTCAAATCTACACCTTTCATTTTATATTGACTTGACTTTTAAAATAATTTATTTTTTTATAAAAGAAATTCATTATAAAATATAGATTAAAATAATAAAAAATTATTTTCTTTTACTCTCCTCTCTCCATCTAGTCATCTACGAGATGAACATTCGATCATCTTTGACATTTTTTTACATGTATTAATTTTTGCATACGAATTTTTTTTTTATATATATATATATATCATGTTTAGCAAAATTGCATATTCTGATTAGTAGAAGAACAACATGGGTCCATGGGATTCGTTCAAAAAATATACAGTATAAAATAAGAACACAATTGAAAGAAAACAATATAAAACTCAAAAAAAAAAAATATCAACCGTTGTGGAAGAGTAATTAGGGGATACTCTGTAGTTTTTAGAGCAGGAAAACCAATATTTACGAATTGTTTTAATCACAAAGTTGATGATTGTTGGGTGATTTTTATGTCTAGCGATTGTGCTACGATGGTGGAAGAAGGAACTTTGCAGCAGTTTTTTACAATATTAAAACCTTTTTTTAAAATAAAAAAATTATTTTCTTTTATATTTTCTTAATTGAAATATTATGGTCAAATAAAAACGGATAAGATTAAATTTTAGTTTTAAGCGATTGAGATTTAATACAATTATGGTGGCTATCATTTTATTGTAGTCATTGAAAAGTCTTCCTATAAAAATTGCCAAAATTTACACCTCGGAGTATCACCGCCACACTTGACCATATTGTCAAGTGATAAGGCTTACAAAACTATAACTAATACAATTCGTCTACAAGGTGATCTATTTACAGCTTTATAACTGAAAAATATTAAACCGCGATAAAAGATTAAACGATAGAACTTGAACTCCTTCAACTTGTAACTGCGATCCTTCACGATCAATTTGCTCCAGTCAATTTAAATGAATTCTGGTAACGAATGGCAGAGAATAGAATTGAAGAGGCTCAAATCAAAAGGAGGCAGCAAAGGCAACCCTGTCAAACTAAAACAAATCAACTGGTGATAAACAAATCAATTGGCATACATGAAGGACAAAAAGCTGTTAACAAGTATGAACAAACTGAGAATCACAACAACGATGATGAAGAAGAAGAAGATGAAGAAGACGAAGAAAAGGGAAGCTGCAATAGTTCAAATGCGCCATACCCAGCAATGCAAATGGAGCAAGAAGAGTCCTACTCCCTCCCTTCCACCTCTTCCACAAACTCAGACAAACAGCCAACACAAGTGGCAAATATACCTGCCTCCAAAGAAGTTTCTAGAAGTATTGAGGAGGATGGGGACCCAGTTGTTTCCACAAGCTTAGCTCGCAACAGCACAGTCCTCCTCCAACTGATTGCATGTGGAGGAGGTGGGACTGTTGGTCCCCAGAGTAAGATGAAAATCAAGGCCAAAGACAAAAACAAAGACAAAGAAAAAGCTAATAACTTCAACTTCAGCATGAAGAATACTTTTATCCCATGCTTGAAACACCAACTGAGTACAAGAAATAATGCGATTCCTCAACGTGTTAAACCAGTAGAACGACAACCACCCTGCAGCAACTACTGCAAGGCAGGGGATCATGATCATGATGATCGAGTAGTAGTGAGTAAGGAATATGAAGATGAAGATATGATGATGGTAAGGTACATGTCTGAGAATCCTCGGTTTGGTAATTTGCAATCACAAGATAAGGAATACTTCAGTGGAACTATAGTTGAGGCTATGAGTACTCATCATCTGCACACTCATTCCTCATCCTCCTGTAGTCATCTTCACCCTCCTGTGTTTACCAAGTCTTCCTCCTATAATGAGCAAAGGTGTGTTATTTTATTTTTGATGTGTTAAAAAGTAGTGTATATGTATGTTTAATTTTGTGTTGTGTTGTGAACTTACAGGAGCTCCAAGGCTGGGCTACAAGCAGAAGCAGAAGCAGCATCAAGTGTAGTGGACATGGATGATGAGAAAGAAGACGCCAAAGTGAAAGGGATTATCAAGTTATGTATGCCTCGAAAGAAAAGCTTTTCTTCCACTTCCACCAAACATAGCTAATAAGTTATGATCGATGAGCTTAGAAATCTCCCCCTCCCTTGTCCAACGTTAGTCCCTTAAGACAGTGTTGCAGCCTAGCAGGTTGAAGTATACTAAAAGCATTGTTTTACTGATAGAGTGATAGATTTTTCTACACTTAAATGAAAATTGTTGGTTAGTGGGATTAACCGATTGTTAAATACGGGTCTGAGCCACGCCCGTCATTAAGAGAGGGAAGTCATTTCACAAGTTTAAATGAGGTTTCATCTTAAAATCATATGGCTTATTAAT TAAGTTCAGATTGGGTCAGTTTTTAACAGCTCTGACTAGAAGTACATTGTTGGTTCTGTATTAACTTTGTGGGTATTGCAGAAGAATCCAGCAAAATAACGACACACGAGGTTGTGTAATATCACCATCAACATCCTATTTTCATCTCTTGAGAAACTCCTATCTTGAAGACACAAGATAAACAAAAGGGAGCTGAATTGTCAGTTACCTCAGAGCATTTTCTGTCAACAAAACCCAACATTATTTACTCCTACCCAACGACAACACAACATGTTACCATCTTTATACCAAGTACAAAATTGATATTATATTTCCTAGCTAGAAATTAATTAAGGTGGAAGAACAATAATAACAGTACAATACAAAACAATGGAGGTTGGAGTTGGGCTTGAGAGAGTTGTAGGAAGATCATCAACAAGTGAGAGATTTGAAATTAGTCCCGCGAAATTAGCATCAAATCTCAAAATTAGTCGTCATAATAGACATGAACAACAACATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACATCACCCAGTAAACAGGTCATTGAAGATGTTCAACAAGGTTCAAGTTGTGTATTATCTCACTCGAAATGGCCACCTTGAACATCCTCATTTTATCGAGGTTCCCCACTTGGCCACACAACCTCTTCGCCTCAAAGATGTGGTAGACAGACTAACGTTACTCAGAGGGAAAGCTATGCCTTGTCAATATTCATGGTCATGTAAAAGGAGCTATAAGAATGGATATGTATGGAATGACTTGACGGAGAATGACGTCATTTATGCCACCGAAGGATCCGAATATGTGCTCAAAGGCTCTGAACTCGTACAAGATAGGGATCACTATTCTGAGAATAGAATTGAAGAGGCTCAAATCAAAAGGAGGCAGCAAAGGCAACCCTGTCAAACTAAAACAAATCAACTGGTGATAAACAAATCAATTGGCATACATGAAGGACAAAAAGCTGTTAACAAGTATGAACAAACTGAGAATCACAACAACGATGATGAAGAAGAAGAAGATGAAGAAGACGAAGAAAAGGGAAGCTGCAATAGTTCAAATGCGCCATACCCAGCAATGCAAATGGAGCAAGAAGAGTCCTACTCCCTCCCTTCCACCTCTTCCACAAACTCAGACAAACAGCCAACACAAGTGGCAAATATACCTGCCTCCAAAGAAGTTTCTAGAAGTATTGAGGAGGATGGGGACCCAGTTGTTTCCACAAGCTTAGCTCGCAACAGCACAGTCCTCCTCCAACTGATTGCATGTGGAGGAGGTGGGACTGTTGGTCCCCAGAGTAAGATGAAAATCAAGGCCAAAGACAAAAACAAAGACAAAGAAAAAGCTAATAACTTCAACTTCAGCATGAAGAATACTTTTATCCCATGCTTGAAACACCAACTGAGTACAAGAAATAATGCGATTCCTCAACGTGTTAAACCAGTAGAACGACAACCACCCTGCAGCAACTACTGCAAGGCAGGGGATCATGATCATGATGATCGAGTAGTAGTGAGTAAGGAATATGAAGATGAAGATATGATGATGGTAAGGTACATGTCTGAGAATCCTCGGTTTGGTAATTTGCAATCACAAGATAAGGAATACTTCAGTGGAACTATAGTTGAGGCTATGAGTACTCATCATCTGCACACTCATTCCTCATCCTCCTGTAGTCATCTTCACCCTCCTGTGTTTACCAAGTCTTCCTCCTATAATGAGCAAAGGAGCTCCAAGGCTGGGCTACAAGCAGAAGCAGAAGCAGCATCAAGTGTAGTGGACATGGATGATGAGAAAGAAGACGCCAAAGTGAAAGGGATTATCAAGTTATGTATGCCTCGAAAGAAAAGCTTTTCTTCCACTTCCACCAAACATAGCTAATAAGTTATGATCGATGAGCTTAGAAATCTCCCCCTCCCTTGTCCAACGTTAGTCCCTTAAGACAGTGTTGCAGCCTAGCAGGTTGAAGTATACTAAAAGCATTGTTTTACTGATAGAGTGATAGATTTTTCTACACTTAAATGAAAATTGTTGGTTAGTGGGATTAACCGATTGTTAAATACGGGTCTGAGCCACGCCCGTCATTAAGAGAGGGAAGTCATTTCACAAGTTTAAATGAGGTTTCATCTTAAAATCATATGGCTTATTAAT ATGGAGGTTGGAGTTGGGCTTGAGAGAGTTGTAGGAAGATCATCAACAAGTGAGAGATTTGAAATTAGTCCCGCGAAATTAGCATCAAATCTCAAAATTAGTCGTCATAATAGACATGAACAACAACATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACATCACCCAGTAAACAGGTCATTGAAGATGTTCAACAAGGTTCAAGTTGTGTATTATCTCACTCGAAATGGCCACCTTGAACATCCTCATTTTATCGAGGTTCCCCACTTGGCCACACAACCTCTTCGCCTCAAAGATGTGGTAGACAGACTAACGTTACTCAGAGGGAAAGCTATGCCTTGTCAATATTCATGGTCATGTAAAAGGAGCTATAAGAATGGATATGTATGGAATGACTTGACGGAGAATGACGTCATTTATGCCACCGAAGGATCCGAATATGTGCTCAAAGGCTCTGAACTCGTACAAGATAGGGATCACTATTCTGAGAATAGAATTGAAGAGGCTCAAATCAAAAGGAGGCAGCAAAGGCAACCCTGTCAAACTAAAACAAATCAACTGGTGATAAACAAATCAATTGGCATACATGAAGGACAAAAAGCTGTTAACAAGTATGAACAAACTGAGAATCACAACAACGATGATGAAGAAGAAGAAGATGAAGAAGACGAAGAAAAGGGAAGCTGCAATAGTTCAAATGCGCCATACCCAGCAATGCAAATGGAGCAAGAAGAGTCCTACTCCCTCCCTTCCACCTCTTCCACAAACTCAGACAAACAGCCAACACAAGTGGCAAATATACCTGCCTCCAAAGAAGTTTCTAGAAGTATTGAGGAGGATGGGGACCCAGTTGTTTCCACAAGCTTAGCTCGCAACAGCACAGTCCTCCTCCAACTGATTGCATGTGGAGGAGGTGGGACTGTTGGTCCCCAGAGTAAGATGAAAATCAAGGCCAAAGACAAAAACAAAGACAAAGAAAAAGCTAATAACTTCAACTTCAGCATGAAGAATACTTTTATCCCATGCTTGAAACACCAACTGAGTACAAGAAATAATGCGATTCCTCAACGTGTTAAACCAGTAGAACGACAACCACCCTGCAGCAACTACTGCAAGGCAGGGGATCATGATCATGATGATCGAGTAGTAGTGAGTAAGGAATATGAAGATGAAGATATGATGATGGTAAGGTACATGTCTGAGAATCCTCGGTTTGGTAATTTGCAATCACAAGATAAGGAATACTTCAGTGGAACTATAGTTGAGGCTATGAGTACTCATCATCTGCACACTCATTCCTCATCCTCCTGTAGTCATCTTCACCCTCCTGTGTTTACCAAGTCTTCCTCCTATAATGAGCAAAGGAGCTCCAAGGCTGGGCTACAAGCAGAAGCAGAAGCAGCATCAAGTGTAGTGGACATGGATGATGAGAAAGAAGACGCCAAAGTGAAAGGGATTATCAAGTTATGTATGCCTCGAAAGAAAAGCTTTTCTTCCACTTCCACCAAACATAGCTAA MEVGVGLERVVGRSSTSERFEISPAKLASNLKISRHNRHEQQHQQQQQQQQQQQHHPVNRSLKMFNKVQVVYYLTRNGHLEHPHFIEVPHLATQPLRLKDVVDRLTLLRGKAMPCQYSWSCKRSYKNGYVWNDLTENDVIYATEGSEYVLKGSELVQDRDHYSENRIEEAQIKRRQQRQPCQTKTNQLVINKSIGIHEGQKAVNKYEQTENHNNDDEEEEDEEDEEKGSCNSSNAPYPAMQMEQEESYSLPSTSSTNSDKQPTQVANIPASKEVSRSIEEDGDPVVSTSLARNSTVLLQLIACGGGGTVGPQSKMKIKAKDKNKDKEKANNFNFSMKNTFIPCLKHQLSTRNNAIPQRVKPVERQPPCSNYCKAGDHDHDDRVVVSKEYEDEDMMMVRYMSENPRFGNLQSQDKEYFSGTIVEAMSTHHLHTHSSSSCSHLHPPVFTKSSSYNEQRSSKAGLQAEAEAASSVVDMDDEKEDAKVKGIIKLCMPRKKSFSSTSTKHS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26556.1 vs. NCBI nr
Match: gi|902038873|gb|KNA02742.1| (hypothetical protein SOVF_215800 [Spinacia oleracea]) HSP 1 Score: 657.9 bits (1696), Expect = 1.400e-185 Identity = 343/344 (99.71%), Postives = 344/344 (100.00%), Query Frame = 1
BLAST of Spo26556.1 vs. NCBI nr
Match: gi|870857263|gb|KMT08823.1| (hypothetical protein BVRB_6g135470 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 538.9 bits (1387), Expect = 9.600e-150 Identity = 329/523 (62.91%), Postives = 377/523 (72.08%), Query Frame = 1
BLAST of Spo26556.1 vs. NCBI nr
Match: gi|731339433|ref|XP_010680850.1| (PREDICTED: protein UPSTREAM OF FLC [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 496.5 bits (1277), Expect = 5.500e-137 Identity = 301/473 (63.64%), Postives = 342/473 (72.30%), Query Frame = 1
BLAST of Spo26556.1 vs. NCBI nr
Match: gi|567871071|ref|XP_006428157.1| (hypothetical protein CICLE_v10027553mg [Citrus clementina]) HSP 1 Score: 243.4 bits (620), Expect = 8.400e-61 Identity = 175/444 (39.41%), Postives = 240/444 (54.05%), Query Frame = 1
BLAST of Spo26556.1 vs. NCBI nr
Match: gi|731439165|ref|XP_002266219.3| (PREDICTED: protein UPSTREAM OF FLC [Vitis vinifera]) HSP 1 Score: 241.9 bits (616), Expect = 2.400e-60 Identity = 193/466 (41.42%), Postives = 241/466 (51.72%), Query Frame = 1
BLAST of Spo26556.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6Q5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_215800 PE=4 SV=1) HSP 1 Score: 657.9 bits (1696), Expect = 9.900e-186 Identity = 343/344 (99.71%), Postives = 344/344 (100.00%), Query Frame = 1
BLAST of Spo26556.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9Y1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g135470 PE=4 SV=1) HSP 1 Score: 538.9 bits (1387), Expect = 6.700e-150 Identity = 329/523 (62.91%), Postives = 377/523 (72.08%), Query Frame = 1
BLAST of Spo26556.1 vs. UniProtKB/TrEMBL
Match: V4SL63_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027553mg PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 5.800e-61 Identity = 175/444 (39.41%), Postives = 240/444 (54.05%), Query Frame = 1
BLAST of Spo26556.1 vs. UniProtKB/TrEMBL
Match: D7TRB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0357g00090 PE=4 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 1.700e-60 Identity = 193/466 (41.42%), Postives = 241/466 (51.72%), Query Frame = 1
BLAST of Spo26556.1 vs. UniProtKB/TrEMBL
Match: A0A067EZH3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015170mg PE=4 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 3.800e-60 Identity = 174/444 (39.19%), Postives = 236/444 (53.15%), Query Frame = 1
BLAST of Spo26556.1 vs. ExPASy Swiss-Prot
Match: UFC_ARATH (Protein UPSTREAM OF FLC OS=Arabidopsis thaliana GN=UFC PE=2 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 1.000e-42 Identity = 156/475 (32.84%), Postives = 234/475 (49.26%), Query Frame = 1
BLAST of Spo26556.1 vs. TAIR (Arabidopsis)
Match: AT5G10150.1 (Domain of unknown function (DUF966)) HSP 1 Score: 176.0 bits (445), Expect = 5.800e-44 Identity = 156/475 (32.84%), Postives = 234/475 (49.26%), Query Frame = 1
BLAST of Spo26556.1 vs. TAIR (Arabidopsis)
Match: AT3G46110.1 (Domain of unknown function (DUF966)) HSP 1 Score: 111.7 bits (278), Expect = 1.300e-24 Identity = 89/238 (37.39%), Postives = 123/238 (51.68%), Query Frame = 1
BLAST of Spo26556.1 vs. TAIR (Arabidopsis)
Match: AT5G59790.1 (Domain of unknown function (DUF966)) HSP 1 Score: 108.2 bits (269), Expect = 1.500e-23 Identity = 98/260 (37.69%), Postives = 130/260 (50.00%), Query Frame = 1
BLAST of Spo26556.1 vs. TAIR (Arabidopsis)
Match: AT1G05577.1 (Domain of unknown function (DUF966)) HSP 1 Score: 107.1 bits (266), Expect = 3.300e-23 Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1
BLAST of Spo26556.1 vs. TAIR (Arabidopsis)
Match: AT2G28150.1 (Domain of unknown function (DUF966)) HSP 1 Score: 90.1 bits (222), Expect = 4.200e-18 Identity = 123/461 (26.68%), Postives = 207/461 (44.90%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26556.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26556.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26556.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo26556.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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