Spo26603 (gene)

Overview
NameSpo26603
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCCR4 associated factor 1-related protein
LocationSpoScf_01236 : 29062 .. 40228 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAAGTGCCATCGCAGAGTACTTTGAAAGGTTCTCGAAATCCAAAACAAGCAGTGTAGATTCTGACGGTTTTTCTGTGACGCTTCTGCTTCTTGAACCTCATTTTTGGAGACTAGGAGGAAGAGGGAAAGAGAATGAGTCGAGGTTTTAGGAAAAGGTTTTTGCCAAAGTTTAATACGGAGAAACGTAGTAGGCGTAAGGGAAAAGTATATACTCCCTCAGTCTCTTTTTGTTTTGTACGTTTTACTTATTAGGTGATTTAAAATATTTTTTACCCTCCGTCTCTTTTTGTTTTTTACATTTAAAACTAGTGAAAAATACCAAACGTAAAAAACAAAAAGAGACAGAGGGAGTAACTGTTATTTGTGTTGTGAGGTTGTGAGGTATTCTCTATTATATAAGCCAAGAGGGGAGAGGCATATGAGTAAATACACTTTTGGTGTCCACTTTTAAAAAGTCCATCATACTCTTGATTGATTAATTGAAAAACAAACGGATTTTTCATGAAATACCCCTCAATTTTCACGAAATTCACCAAATGCCCCTCAACTTTCAGAAATTCACCAAATGCCCCTCACCTTTAATATAATACCCAAACTACCCTTACTAATGACGCGCCGTTAGTCCGCCGTTAGTCCGCCGTTAGCCTACTTTTCTAATTCACCAAATGCCCCTACAATGTAACTTATTTCACCAAATACCCCTATTTTAAAATATAATTCACCAAATGCCCAAAGGTAAAAATTACCTTTTTAAAGCCCAACGGCTAGTTTTTTGAGATTGAAAAATAGCCGTAGCTTATTGTTTTAGTATAAATAATCCTGTTCTGAGTGTTTATTTAGTCACCAAATTGTTTTGTTGTAGTTTCATCTCATTTTGTGTCATGAGTTATCATTCAAAATCATCATCCACACATAATGAGTCTATTACCTCTTGTTTTGCATGAATATAAGTTAAAATCACTACTCAATGAAAGGAAAGGAAAAAAGGGCCTCCATATTGCAGATAACCAATTGATATTACACTCTATTACCTCTACTAATGGAGTATCATATTCCTGTTATCCAAGCAGATAAGCGGGAAGAAAGTCATGTTCTTAATTTCGTTTCGTGGCCTCAAATAACCGTGAACCAAACACGCATCAAACTCATTAAGTGGTGTTAGTCTTTTGAGTAGAGTTTCATTTGGTTGGTCTTTTATTTTGGAGACATTCTCTTAATTGTATCGCTCTTTTCATGTGCCACTCTATAAGAAATGTAAATAAGTAAATTGAGGCATTATATATTTGTATCAAGTGTATTGCTTGCATATACAAAGTACCAAGTAGTACTTGGCCTAACCTAGTTGTTGAGATTGTATCTTACAACCTCAAAGTTGTATTTTGGGGGTGAGGATTCCCTTCCCTTGAGTATCCTCTTATGCTCAAGGGGCTTACTTATTAACTCGGATCGAATAGTTCTAAACTGTAACATTGCCACAGTATCTATCATCACACTGCCTTATATCTTCCATAATCTCAACTCTCAAGTGACTGGAAAGTTTTGGTGACTAAAACAATAAGCTACGGCTATTTTTCAATCCCAAAAAACTAGCCGTTGGGCTTTAAAAAGGTAATTTTTACATTTGGGCATTTGGTGAATTATATTTTAAAATAGGGGTATTTGGTGAAATAAGTTACATTGTAGGGGCATTTGGTGAATTAGAAAAGTAGGCTAACGGCGGACTAACGGCGTGTCATTAGTAAGGGTAGTTTGGATATTATATTAAAGGTGAGGGGCATTTGGTGAATTTCTGAAAGTTGAGGGGCATTTGGTGAATTTCGTGAAAATTGAGGGGTATTTCATGAAAAATCCGAAAAACAAATTATTAGGAGCTTTGCAACCTTCAAACGGTTCGCCGTCTTCTTCCCAGTCACCATAGAAACCCTAGAAATCCAAACTCAAAATTAACAGATTAAATACAAGCACTCTTAAGACCCATAACTAATCTCGAAGATCTGGATTCTTCATCTTCTTCATGGCCCATGCACCGACGATTTTGATTCGCAAGGTGTGGTCTGCAAATCTTGAATCAGAGTTCTATTTAATCTGATCTTTAATCGACATTTTCTCCTTTGTTTCTATGGATACGGAGTTTCTCGTCATACCTTAAAGCCCGAAAATTGTCTTCGCATGAGTACTTGCCTCCCGAGGTTCACTACAGTTTGTTGAAGCATAATGTGGATGCTTTGAAGATCATCCAACTCGGGTTAACTTTGTCAGATTCGGAGGGGATATGCCGGATCTTGGAAACCCTAAGTACAGGTACTGGCAGTTCAATTTTAGTGACTTCGATGTTGCAAATGACCAACAGGTCGCGGATTCCATCGAGTTGTTAAGGAACAACGACATCGATTTCGATAAGAATATGAGAGTAGGAGTTGAGAAAATATATTTATGAATTTTCAAATTTTGTAATAGGTGATTTTTTTGCCATGATTATGCTCCTGCTCAATTTTCCGGTTCATCGGTTTGGGTTTGTTAATTCGGATTCTGATGAACTGAATCTCTTTGTTTTTAATTTTTTTTATTAATTTGTTTTTTTTTTGTCCATATAAGTGAACCTGATTCTTCCTTACACAGGATAGGTTGAGATTTCAATTGATAATTTGTTTTAAGTAAATTGGTAAGTGCATTGTGTTTTTTTAATTACGACTTTTGACGAAGGTTTTTCTATTTGTTTGAAATCTTTGATGTAATTCGCAGATGCTAAATGAGATCATGTACCTAAATAATTATGGTAATTCACGAAGGTTTCTGTCCAGCTACATGTCCTGATAGCTTTAATCATTGTTATTTCTCCCTGTATCGTGCTGCAACATAAGAATACCAGGTTTCTGTCCATCCCTGTATCGTGCTGCAACATAAGATTATTCCGTAATTGCTTGCTTCATATCAGTTCCTGTTTTGGAATATGGATACTCCTTATCCTACCTTACAAGTTACAACTAAGTGGAAGCTAGAGGATAGTGGTACACAGTAGACGCTCTATAGATCTCACATAACTATTGGGCCTTCTAACTTAGCTGTTATTTTCTTTTGGCTTGACAGCTAATTTGCCTATAATGTCTGAATTTAATTGGTCATAGTATATTAACATTTCCAAAGTTGTTGAGTGTAAAATCAATGTGAAGAATTTGAGGAATCTTCAAGTCTTTGGATCAATGAACATTGTACATTTTTTTTTCCAGTAACATTTTAAAAAAAAATCTTGGATCTATTTTAATTCCATTCCTGTTAGTGAGCTCCCGTTCCTTCTTATTTTTGCACATTAGAGTTTCGAATCTTATATCGTATAATAACTTTTTATAGTAGATGGAAAGCTTGATAAAGATGGGAAGTTTATAGTAGATTTTCCGTATGGACCACCTATCATTGTTATAAACCTGAGATATCTCTGATGTTGCTGCTTCTTTCTTTGTTTTCGTTCATCATCATATAATAATTTTTCTGTTGTAGCTAAGAAAACTTTCTTAATTTGTATCATTTCCCAGTAAATTGATTTAATTTCTTTATTTCGGCATTAAGATTTAGATTCTTTGTCATGTAAAAGCATGATTACTCTTTTTCACTATTTAGATGTATGATTGTATAGTATAACCTTAATTTTTTTAAATAAGAACTTTGTGAATATTTTTTTTATCTAATATTTGTATTTAGTGGTAGTAATACAATTTTAAGTTTTTATATTATCCCGCACACATCGCGTGCATATAAGACTAGTAGGAAATAAGCAAAGTTTATATCTGATATGATACAAACTCTCGGTTATGCAAAATGTATTGCTTGTATTGAGTTGTTATAAATGATTTACATTGGTATTTATAGTGGTGATTCCACTATTCAATGTCAAGCTACTACCTAGTTTACCTAGAGTAGGAGGCAAGAAATTTTGCCAATTCATTAAATGCAAGGTTGGACATTCACATTTTGTAGTGTAAATGTTTGACTCTTAACACTCCCCCTTGAATGTCCATCCTTAACGATGTACTAGTTTTGTGATTATATGCTTTTGTATACTGCCTCATTAAAAACCTTGTCAGGAAAAACCCAGTAGGATAAAAATCTGATCGAAGGGAAAAAGAGTGCAGTGCATATAATACTCCCCCTCAATTTAATACAGCTCACGAAGACGACGCATTCCAATTTTGTGTACCAACTGCTCAAATCTCTTTGATGGAAGAGATTTGGTAAACAAATCTGCAAGATTGTCACACGACTAGATCTGTTGGACGTTTATCGTTCCTTCTTTCTGGAGATCGTGTGTGAAGAACAACTTTGGAGATATGTGTTTTGTTCGATCACCTTTGATGTACCCTTCAGTTACTTGTGCGATGCATGCAGTATTGTCTTCGTAGAAGATGGTAGGATTTTCTGTTACTGAGTTCATTCCACATCCTTCTTGGATATTACTGATCATTGACCTGAGCCATACACATTCTCGTCCAGCTTCATAAAGAGCAATCAATTCCGCATGGTTTGATGATGTAGCGGTCAATGTTTGTTTCGTTGATTTCCAGGATATTGCAGTACCTCCATAAGTGAACAAATATCCAGTTTGTGACTTGGCCTTCTGTGGATCCGATAAGTATCCAGCATCTGCATATCCAATGAGAGTATCATCTTTTCTTGACTGATAGAGTAGACCAAGATCTGGTTTTCCTCGTAGATAACGGAATAAATGTCTTATTCTATTCCAATGTCTCTTTGTTGGCGAATTGCTATACCTGGCTAACAAGTTCACATAAAAAGCAATATCGGGTCTAGTATTGTTAGCTAAATACATTAAAGCTCCAATTGCACTTAGATATGGTACTTCAGGACCAAGAATTTCTTCATTTTCATCTCGAGGTCTGAATGGATCATCTTTCATATTCAAAGATCGAACGATCATAGGGGAATTCATTGGATGTGATTTGTCCATGTAAAAGCGTTTTAGGACCCTTTCTGTGTAATTTGATTGATGGACAAAAATTCCCTCTTTCAAGTGCTCAATTTGTAGTCCAAGACAAAATTTGGTTTTTCCAAGATCTTTCATCTCAAATTCTTTCATCAAGTATTTTGCAGTTTGTTCAAGTTCTCTTGGAGTTCCAATGATATTTAAATCATCCACATATACTACAATGATAGCGAATCCTGACTGGGATCGCTTAATGACGCAGGGACTGATTTGGTTGTTTTTGAATCCTTCTTTCACAAGATATTCACTAAGACGATTATACCACATTCTTCCAGATTGTTTTAGCCCATAAAGTGACCTTTTCAGCTTTATGGAAAGCATTTCTTTAGGTTTGTGGTTTTCTGGTAATTTTAGTCCTTCAGGGACTTTCATATAAATGTCTGCGTCAAGTGACCCATATAAATATGCGGTCACAGCGTCCATTAATCGCATTTGCAGTTTTTTCGAAACCGTCAAGCTTACCAAAAAATCTTAGTGTAGTAGCATCAACTACTGGAGAATATGTCTCCTCATAATCAATCCCTGGTATTTGAGAGAAACCTTGGGCAACTAGCCTTGCCTTGTATCTTGTAACCTTATTGTTCTCATTCCTTTTTCTCACAAATACCCATTTGTGTCCGACAGGTTTTACACCCTCTGGTGTAGTGGATATTTTCCCAAAAACTTCTCGTTTTTCAAGGAATTTCAATTCTGCATGAATTGCCTCTTTCCATTTTGGACAATCATGTCTGCGACGACATTCATCCACTGTTTTCGGTTCAGGCTCATCATTATCAGATATCAATTCAATTGCAATGGAGTAAGCAAATATTTGATCTACGATAACATTTTTCTGGTTGTAATGTTTCTTGGTTGAAACATAGTTCATTGAAATTTCATCGTTATCGACTTCTTTATGTTTTTCTTCCTCCTCTTTAGGAGGATAATCTCTTTCAACATTTTCCTCTTCATGTAATCTTTCATGACCTTCTTTTGGAGGATCAATATTGATTTCATTTGTTACTTCATCAGGCCTCTTTACCTTTCTTGGCTTAGAATCTTTTGAACCAAATGGCCTTCCACGTTTTCTTCGTGCCATAGACTCATTTTCAATGGCCTTATTATCAGTGGGAATTTCAATGCGTGCAGGTGCATTCTCTGCTGGTATATGTGACTTTGTCACCTTCTTTGTATCCGTGAATGCATCAGGAAATTGATTTACAACACTTTGTAAATGAACAATTTTCTTGACTTCTTGTTCACATGAATTTGTTCGTGGATCAAATATTGACAGTTGTGTTGCATTCCATATGATTTCAATCTCCTTTTTCCGTGGGTCCACTTTCTCTCCCCCTAAGGCTGGGAATACCGACTCATTAAAATGACAGTCAGCGAACCTTGCTTTAAGTAAATCGCCAGTCATTGGCTCAAGGTATCTAATTATGGAGGGGGAATCAACCCAACATAAATTCCCAGCCTTCTTTATGGACCCATTTTTGTGCGTTGGGGTGGAGCAATGGGAACATACACGGCACAACCAATTATTTTTAGATGTGAGACATTTGGTTCTCGATCATATACCAACTGTAATGGTGAGAACTCATGATAAGCTGTCGGTCTCAATCTTATTAACGCTGCCGCGTGTAAAATAGCATGGCCCCAAGCAGATGAGGGTAATTTTGATCGCATTAACAATGGTCTTGCAATCAATTGTAGTCTCTTGATCAGTGACTCAGCGAGACCATTTTGTGTATGCACATGAGCCACTGGATGTTCAACAACAATTCCAACCGACATGTAGTAATCATTAAAAGTTTGGGATGTAAATTCCCCAGCATTGTCGAGTCTTATTTTCTTTATTGTATGGTTTGGGAATTGAGTCCTTAATTTGATGATCTGAGCAAGTAGAATAGCAAATGCAACATTTCTAATTGACAAGAGACTCACATGTGACCATCATGTTTAAGCATCAATCAATACCATAAAATATCGAAATGGTCCACTTGCAGTATTAATTGGCCCGCAAATATCTCCCTAAATTCTTTCTAAAAATGATGGAGATTCAGTGGTAATTTTGTTTTTGGATGGCCTTATAATCAATTTGCCAAGTGAGCATGCAGAGCATGTCAATTCATTTGATCGGGGTATTTTAACATTCCTTATTGAATGCCCGATTGAATTTGCTATAACCTTGTGCATCATTCCTGTTCCAGGATAACCCAAACGGTCATGCCATAATGTGAGCAAATTCTTGTCATCTAACTTCTTGTTAGATATCATATTTATTTCAATTGGCCGTATATCTATACGATATAGCCCCGAAGAATACGCTGGAAATTTCTCAAAAATATGTTTCTTGCCACATTTTTCTGCCGTGAGGCATAAATATTCTTTTTGATCCACTGTCATTATTTCTAAACGATAACCATTTTGACGCACATCTTTAAAACTTAAGAGATTTCTTCGAGATTTACTCGAATATAAAGCGTCATTAATAATCAATTTTGTTCCATTTGTGAGCACAATGCAAGATCTTCCAGATCCTTCTATTAGCTTTGCTGTCCCGGAAATGGTATTTCCATTTGCTTGAAACTTTGTCAAATTTGAAAAATACTTTGTATCTTTTAAGATAGTATGCGTTGTTGCACTATCCAAAAGGCATTGATATTGAGAACCAACTTCAGGTGGATTCATATCTTCATAAATAAATATGCAATTAGTTTAGAGAAATGATGATGATAAAAAGTTTATTGATTAAAATTCATGACAAGGTAAACGAAAAGTACATAAGAAAAATACATAAGAACAATACATGACATAATTTTAGATGGGGGTATCTATATGTTACTATTATCCCCAGATATCAAATCATTGCCATTTTCAGGGTTATCCATGAAGAAATCAGACACATCAAAACTTGGCACTGAGGTATTTTCCTTATTTACATAGTTTGCCTCTGCAACTTTTCCTTTGCCTTTTATGGATGCTTGGTACAAATCTACCAAATGTTTGGCAGTACGGCATGTTTTCCCCCAATGGCTAGTCATGCCACATCTAAAGCATGTGTCTTTTTCTTTCGAGGGGGTCTGCTTTTGATTTCCTTGTTGATGCCCTTTTTGGTTATTGTCTCTAGGGGCGAGATAACTCTGCCATGACCACGACCACGGCCACGCCCGCGGTGGTTTCCACGTCCTCTACCGCGATGGTTATATCCTCCACGTCCACCTCTATGAGCAACATTTTCCTCGGGTGGGTTTGAGCTTTCAACAGCAGTTGATTCATTGAATGCCATAGACCCAGTTGGTCTAAGATTATGGTTTTTCAACAGAAGATCGTTTTTCTGTTCGGCAACGAGTAGTATAGAAATCAGCTCAGAGTATTTCTTAAAGTCCCTCTCTCGGTATTGCTGTTGCAATACAATATTGTTCGCATGAAATGTGGAGAGGGTTTTCTCTATCATTTGATCTTTTGTGACCGCTTGGTCACAGTATTTCAGTAATGATACAATTTTGAATAGTGTGGAGTTATATTCACTGACAGATTTAAAATCCTGGAACCTCAGATTGGTCCAGTCAAATTGAGCCTTTGGTAGGAGCACCCTTTTAGGTGTCCATATCTTTCTTTAAGGCTATCCCACAACTCTTTGGGATTTTCCACCAACAGATATTCAGTTTTCAGGTTGTCATGTAAATAATGCCTTATAAGTTATAAGGACTGTGGCTTTGGCCTTTTCCTGCTCGGTGGCAGTTTTGATTTCTATAGTGCCTGGAACCATTATATCTTTTATGGTATGGTCCAGTCCTTGGGCTTTTAAATTCATCTGTGCATCAACAGTCCATTCCAGAAAATTGTGCCCAGACAAGTCTAGCACATTGAATTGTCTTTTCATCAAATCTCCCATTTTAACTACAATCAAATAATCATTAAACTTAGTAATCAACATTATAATTAATTAATCATATTCATAATAATTAACTATCATTAAAATGTTGTCTTTTCTTCTCCCCTTAGTTAGTTAATATGAATCACGCATAAATAAATCTAATAACGTTAATTTAAGCAAAAAATAAGATAACAATCACAATAATAATATTACATATATGGTTAAAAAAAATTAAAAATGCAACAAACTACAATTAATACATCAAAATGGAAAATGAAGTACTACAAGAATTATGCATTTTGTTCTTACTTGCCGGAAATAAACAAAAACATAAAAAAATGGAGATCTTCATTTGTTGAAAATTATGAAAATCATTAATGCCATAAGAAGGACTACTGAGGCCATCATTTTAAAACAAAATATTGTTTTAGTTTTTTTAAATCTTCCTCGAAGGTGAAGACGTGTGGAGGGTCGGGGTTGCCGGCCAGAAACATGTTTGATCGGAAAAAATGGAGGAGGAAAATAAGAGGAAAATTTGTGATTTTGATAAAAAGTAAGAAGGAGATAAGATGTTGTTTGGTGAAAATGGGACGGGTAATCCCCCTTTTATAGGGGATAAATCATGATTGTATTATACAATTTGTTACAGTAAACTGGTATATTATAGTCTAAAGAGGTTAATAATTTTATTATTTACTACCAAAAAAATATCAGTATGGATTTGAAAAGAAATAATGGATATATAGAATTAAAATTGTAAAAAGATATCCCCCGGGATGCAAGCCGTAATGGTCCGAGAACCCTAGTCTGTTTAAGAGATCGTGGGTTCGAAAAAAATAAAATAAAGATGTAGCTGAAAATAAAGGCTACATCGTTTTTACCACAAAAAAATATATTATTTTAAGTCTAGTCTAGCTATATGCATGTAGGCATGCAAATGAATAATATATATATATATGTAATGATAATGCATGGCTAATATTACTATGCATGCATGTAGTACGTAAGAGTGCATATATACAACTATGCATGCATGAATGAGAAAAAACAACCAAGTGTCATAAATAAATTACACATGCATTTTCTCCTTTTACCAAGTTGATCATAAGACCGGTAGCAATGTGAACTATCTTTTATGATTAAAAACGGGTGTTTAGAGTTTTTGATATAGAGGATCCCAAATATGGGCAACTATAAAGCATACTCCTCAAAAACATTTTGTTAAGAATATAACCACTTTCTCTAAAATTTTGAGTAACAGATAAAAAATATGCCTGAGGAAAATTGGTGCGGATAACGTGTTGTGAGGTAATAGGAAATAAGAAAAGTTTATATCTGATATGATACAAACTCTCGGTTATGCAAAATGTATTGCTTGTATTGAGTTGTTACAAATGATTTACATTGGTATTTATAGTGGTGATTCCACTATTCAATGTCAAGCTACTACCTAGTTTACCTAGAGTAGGAGGCAAGAAATTTTGCCAATTCATTAAATGCAAGGTTGGACATTCACATTTTGTAGTGTAAATGTTTGACTCTTAACAATTTGTGAATAGTCAAACAATATTGTATTTTCGTAAACATATCGGTAAGAAAACTAAAAAGAAGGTGGAAATTATAAAAGAAACAAAAAAAGTAAATTGAATAAAATATTAGTTAACATAATATAATTTGAAGTTAATATAATAAAATGTGAGTTTAAATGAATAAAAAAATTGAAGTTAAATGTATATCTTGAAAGTGTATTTATTTACGATTTTTCCATGTGATTTGTCGAGTGTATTTATTGGTTTGGAATCATGATCACCCAAGTGTAAGTGTGTAACTACATAGGGTTGTTGGTCGGGACGGACGAGTCATGTCGAAAATTTAAAACATGTGTCCCATGCTGGCTAGTACCGTGGGCCCTTGTATCGAGTCGGATTGGACCGTCGTGCATAAACCTAATTTTATTAAATTTAGCATGCTTTGTAGAGATCCGCCCGTGTTGTACCTTATCGTGCTTTTTTCAAAAAATGCGGCCCACGACTGTGCCCCCTTGTCGAACCAAGATTTTTTGTGTCGGGTCAGACCTCGGGTCGACCCGACCGACACCGATCTTTAGGTGTAACCATGTTAAAGGGTTAAAAGCATAAGTGATGGCAAGTTACAACCTTTGCAACTTTGTTAGCCACATCAGATTTTGAACCTCCTATATTTTTTTGGGGTTGCCTCGCTTTTGCACCCAAAAAAACAACAATTTCAACCTCCTACCTCTTTCATAGAAAGGCCACAATCCACAAGCCACAACATCTTATAG

mRNA sequence

ATGAACAAAAGTGCCATCGCAGAGTACTTTGAAAGGTTCTCGAAATCCAAAACAAGCAGTGTAGATTCTGACGGTTTTTCTGTGACGCTTCTGCTTCTTGAACCTCATTTTTGGAGACTAGGAGGAAGAGGGAAAGAGAATGAGTCGAGATTCGGAGGGGATATGCCGGATCTTGGAAACCCTAAGTACAGGTACTGGCAGTTCAATTTTAGTGACTTCGATGTTGCAAATGACCAACAGGTCGCGGATTCCATCGAGTTGTTAAGGAACAACGACATCGATTTCGATAAGAATATGAGAATGCTAAATGAGATCATGTACCTAAATAATTATGAAAGGCCACAATCCACAAGCCACAACATCTTATAG

Coding sequence (CDS)

ATGAACAAAAGTGCCATCGCAGAGTACTTTGAAAGGTTCTCGAAATCCAAAACAAGCAGTGTAGATTCTGACGGTTTTTCTGTGACGCTTCTGCTTCTTGAACCTCATTTTTGGAGACTAGGAGGAAGAGGGAAAGAGAATGAGTCGAGATTCGGAGGGGATATGCCGGATCTTGGAAACCCTAAGTACAGGTACTGGCAGTTCAATTTTAGTGACTTCGATGTTGCAAATGACCAACAGGTCGCGGATTCCATCGAGTTGTTAAGGAACAACGACATCGATTTCGATAAGAATATGAGAATGCTAAATGAGATCATGTACCTAAATAATTATGAAAGGCCACAATCCACAAGCCACAACATCTTATAG

Protein sequence

MNKSAIAEYFERFSKSKTSSVDSDGFSVTLLLLEPHFWRLGGRGKENESRFGGDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMRMLNEIMYLNNYERPQSTSHNIL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26603.1Spo26603.1mRNA


Homology
[Close]
BLAST of Spo26603.1 vs. NCBI nr
Match: gi|902085875|gb|KNA03202.1| (hypothetical protein SOVF_211430 [Spinacia oleracea])

HSP 1 Score: 84.0 bits (206), Expect = 2.000e-13
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRY-WQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMRM 102
           G+MPDLGNPKYRY WQFNF DF+VA DQQ ADSIELLRN+ IDFDKN+++
Sbjct: 86  GNMPDLGNPKYRYIWQFNFCDFNVAKDQQAADSIELLRNSGIDFDKNLKL 135
[Close]
BLAST of Spo26603.1 vs. NCBI nr
Match: gi|731344844|ref|XP_010683623.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-8
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRY-WQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLGNPK R+ WQFNF DFDV +D    DS+ELL+NN IDF+ N +
Sbjct: 107 GNLPDLGNPKCRFIWQFNFRDFDVGHDNHAPDSVELLKNNGIDFELNRK 155
[Close]
BLAST of Spo26603.1 vs. NCBI nr
Match: gi|870854928|gb|KMT06676.1| (hypothetical protein BVRB_7g158400 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-8
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRY-WQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLGNPK R+ WQFNF DFDV +D    DS+ELL+NN IDF+ N +
Sbjct: 107 GNLPDLGNPKCRFIWQFNFRDFDVGHDNHAPDSVELLKNNGIDFELNRK 155
[Close]
BLAST of Spo26603.1 vs. NCBI nr
Match: gi|694440695|ref|XP_009347151.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Pyrus x bretschneideri])

HSP 1 Score: 66.2 bits (160), Expect = 4.400e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 

		  

Query: 52  GGDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNM 100
           GG++PDLG+P    W+FNF+DFDVA D+  +DSI+LLR   IDFD+N+
Sbjct: 92  GGNLPDLGSPTPYIWEFNFNDFDVARDRHASDSIQLLRRQGIDFDRNL 139
[Close]
BLAST of Spo26603.1 vs. NCBI nr
Match: gi|828302388|ref|XP_012569692.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 isoform X1 [Cicer arietinum])

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-7
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKN 99
           G++P LG PK   W+FNF DFDVA D   ADS+ELLR   IDF+KN
Sbjct: 100 GNLPTLGTPKSYIWEFNFKDFDVARDDHAADSVELLRRQGIDFEKN 145
[Close]
BLAST of Spo26603.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7I7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211430 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.400e-13
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRY-WQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMRM 102
           G+MPDLGNPKYRY WQFNF DF+VA DQQ ADSIELLRN+ IDFDKN+++
Sbjct: 86  GNMPDLGNPKYRYIWQFNFCDFNVAKDQQAADSIELLRNSGIDFDKNLKL 135
[Close]
BLAST of Spo26603.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EU04_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158400 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-8
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRY-WQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLGNPK R+ WQFNF DFDV +D    DS+ELL+NN IDF+ N +
Sbjct: 107 GNLPDLGNPKCRFIWQFNFRDFDVGHDNHAPDSVELLKNNGIDFELNRK 155
[Close]
BLAST of Spo26603.1 vs. UniProtKB/TrEMBL
Match: A0A022R6E6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a011524mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.600e-7
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKN 99
           G++PDLG+ +   WQFNFSDFDVA D    DSIELL+ + IDF+KN
Sbjct: 94  GNLPDLGSGERFIWQFNFSDFDVARDPHAPDSIELLKEHGIDFEKN 139
[Close]
BLAST of Spo26603.1 vs. UniProtKB/TrEMBL
Match: M4F1Q5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-6
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLG+ +   W+FNF DFDVA D    DSIELLR   IDF++N R
Sbjct: 85  GNLPDLGDGRRFIWEFNFKDFDVARDAHAPDSIELLRRQGIDFERNRR 132
[Close]
BLAST of Spo26603.1 vs. UniProtKB/TrEMBL
Match: A0A078ID64_BRANA (BnaA06g38950D protein OS=Brassica napus GN=BnaA06g38950D PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-6
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLG+ +   W+FNF DFDVA D    DSIELLR   IDF++N R
Sbjct: 86  GNLPDLGDGRRFIWEFNFKDFDVARDAHAPDSIELLRRQGIDFERNRR 133
[Close]
BLAST of Spo26603.1 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.800e-8
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 

		  

Query: 49  SRFGGDMPDLGNPKYR--YWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           S   G++PDLG+  +R   W+FNF DFDVA D    DSIELLR   IDF++N R
Sbjct: 88  SDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCR 141
[Close]
BLAST of Spo26603.1 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.800e-8
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYR--YWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLG  K R   W+FNF DFDV  D    DSIELLR + IDF++N R
Sbjct: 90  GNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRR 139
[Close]
BLAST of Spo26603.1 vs. TAIR (Arabidopsis)
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.200e-9
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 

		  

Query: 49  SRFGGDMPDLGNPKYR--YWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           S   G++PDLG+  +R   W+FNF DFDVA D    DSIELLR   IDF++N R
Sbjct: 88  SDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCR 141
[Close]
BLAST of Spo26603.1 vs. TAIR (Arabidopsis)
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 5.500e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYR--YWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNMR 101
           G++PDLG  K R   W+FNF DFDV  D    DSIELLR + IDF++N R
Sbjct: 90  GNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRR 139
[Close]
BLAST of Spo26603.1 vs. TAIR (Arabidopsis)
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.200e-6
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKNM 100
           G++P  G  K+  WQFNF +F++  D   ++SIELLR   IDF KN+
Sbjct: 86  GNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNI 132
[Close]
BLAST of Spo26603.1 vs. TAIR (Arabidopsis)
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1 

		  

Query: 53  GDMPDLGNPKYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKN 99
           G++P  G  KY  WQFNF +FD+ +D    DSIELL+ + ID  KN
Sbjct: 86  GNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKN 131
[Close]
BLAST of Spo26603.1 vs. TAIR (Arabidopsis)
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1 

		  

Query: 53  GDMPDLGNP-KYRYWQFNFSDFDVANDQQVADSIELLRNNDIDFDKN 99
           G++P  G   KY  WQFNF +FD+ +D    DSIELLR + IDF KN
Sbjct: 86  GNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKN 132
The following BLAST results are available for this feature:
BLAST of Spo26603.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902085875|gb|KNA03202.1|2.0e-1378.0hypothetical protein SOVF_2114... [more]
gi|731344844|ref|XP_010683623.1|2.0e-861.2PREDICTED: probable CCR4-assoc... [more]
gi|870854928|gb|KMT06676.1|2.0e-861.2hypothetical protein BVRB_7g15... [more]
gi|694440695|ref|XP_009347151.1|4.4e-858.3PREDICTED: probable CCR4-assoc... [more]
gi|828302388|ref|XP_012569692.1|2.2e-760.8PREDICTED: probable CCR4-assoc... [more]
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BLAST of Spo26603.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q7I7_SPIOL1.4e-1378.0Uncharacterized protein OS=Spi... [more]
A0A0J8EU04_BETVU1.4e-861.2Uncharacterized protein OS=Bet... [more]
A0A022R6E6_ERYGU7.6e-760.8Uncharacterized protein OS=Ery... [more]
M4F1Q5_BRARP1.7e-656.2Uncharacterized protein OS=Bra... [more]
A0A078ID64_BRANA1.7e-656.2BnaA06g38950D protein OS=Brass... [more]
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BLAST of Spo26603.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CAF1I_ARATH5.8e-853.7Probable CCR4-associated facto... [more]
CAF1K_ARATH9.8e-856.0Probable CCR4-associated facto... [more]
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BLAST of Spo26603.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G44260.13.2e-953.7Polynucleotidyl transferase, r... [more]
AT5G22250.15.5e-956.0Polynucleotidyl transferase, r... [more]
AT5G10960.11.2e-646.8Polynucleotidyl transferase, r... [more]
AT1G80780.31.5e-650.0Polynucleotidyl transferase, r... [more]
AT2G32070.11.5e-653.1Polynucleotidyl transferase, r... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 60..100
score: 3.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 61..101
score: 8.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009612 response to mechanical stimulus
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
biological_process GO:0002213 defense response to insect
biological_process GO:0009611 response to wounding
biological_process GO:0010200 response to chitin
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0032774 RNA biosynthetic process
cellular_component GO:0030014 CCR4-NOT complex
cellular_component GO:0005634 nucleus
molecular_function GO:0000175 3'-5'-exoribonuclease activity
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo110730.65Barchart | Table
Spo189800.65Barchart | Table