Spo26652 (gene)

Overview
NameSpo26652
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMATE efflux family protein
LocationSuper_scaffold_126 : 114512 .. 116326 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATAACTGCAGGGATCACTACACTACTGCATTTGCCAGTTTGCTGGACTTTGGTCTTCAAATGTGGTCTTGGAAACCGAGGAGCTGCCCTTGCAACTGGTGTATCTTATTGGATTAATGTAATATTGTTAGCACTTTATGTTAAGTTTTCTTCTTCGTGCTAAAAAACTTGGACAAGTTTTTCTACTAAAGCTCTGCATGATTTACCTACAGTCGTCAGACTCAGTATTCCCCCTGCTTGTATGGTATGGTAAGTCCCTGGAGCCTGTAGCTTGCTTTTTGACACATAATAAAATTAAAACAAAGCATCGTATTGGTCCTTCTTTAATTTCTTCCTACAGTTTAGAAATGTGGTCATTTGAAATGATGTTCTCTTAGCTGGTCTTCTTCCCAACCCAACATTAGAAACATCCGCGCCGTCTATCAGGTATATATGTACAAGTTTAAGTTATACTTCATAAGAAACATTCAATATGAGCTGACGTTCCAAGATAATTAAGCAAATGGGATTATACCATCTGACTGCTGGTCCTCTTTTTTTTGCAGTCTCAACACAGCTGCACTTGTGTGGATGATCCCCTTTGCTCTTAGTGGTGCTGTCAGGTATTTTTCTCTTTTTCTTCTGATATTTGTGAGACTTGTTACCAAAATTACCTCTTGAAGTGAACTAAAAAATTAAATGTGGGTGTTCCTGCTAATGTTGCTGTCGGAATATCGCCATTAGGAGGGTCAATTTTTCCTGTTTCTTTGATCTTTCACTTTCACTTTCATAATTCCATTATTTCTATTTTTTTTTTATTTTGTTTGGTAATTTTCGAATTGAAATCCTGAGTTAGGGTTCCGAATTCTCCTTTTAATATGCGTTGTGGTGATTTTCAAATGAAATTTGTCACAGTTACGATGAAACCTCGGCTTTCAACTAATTTGAGTGCATAGCGTGTTTGTGTGTTGTGTCCTATAAGAATTTCTTACATATAGTGCACTTTCATGCAGTGAGGCTTAGCATTAAGTCCTTCAGAGTACCAGAGATTTTCATTGAGGTTCCGAATAGTACAACTGTTGGTTCACTCAAGGTATGCAACTGAGTTATGGTTTTGCAAGACCTGTATTTGGAAATTGTACTGACAGTTTAATTTTTTTTTTCCGGTATGTTTTTTTATTGATTGTGTTCTTGAGAATAAAGGAGGAGCTGACTAGGTTGAGGTTGAAAAATGTACACTAAGGCATAGGTTATTACATAAAAAAGGCATAGGTTGTTCTTGGATTTGGGTGGATATCCCAGGCTTTTAAGTCAATAATGAAAAACCTGTCGTGATTTTAAGGCTAAGTACAAAAATCTTAATTCTATTCAATCATCTGAATCAAGCTAGGCTCTTTGTTTTTTGCTGGAAAACTGAAAAGTAGTGGACAACTTAATGCACTCCATTAGGGATTTGGTTAGTTATATATGGTTTTGCAGCATGGTTGAAAGCTAGAGCTGGTTAAACATTAAAATTAGCAGTATCAGGTTAGCTTTGTTGGTAAACCTAATCTAATTAGGTTTGTGACACCATTCTTGCCATTAGTTCCAATCTTGTGTCATTTGATTTGAGCTTTTGGNTTAGGTTTGTGACACCATTCTTGCCATTAGTTCCAATCTTGTGTCATTTGATTTGAGCTTTTGGTTGTCCTTTCTTAACTAGGAGCATATTATAGTTTTATAGGAAGCTTACATTAGTAGTTATGTGTCATCTGTTTAAGCAACAATCTTATCATAATTCTGTTTTTTATGGAAGCAGGGCGTGCCAGAAGAAAGCTCACTGGGACAGTGA

mRNA sequence

ATGATGATAACTGCAGGGATCACTACACTACTGCATTTGCCAGTTTGCTGGACTTTGGTCTTCAAATGTGGTCTTGGAAACCGAGGAGCTGCCCTTGCAACTGGTGTATCTTATTGGATTAATTCGTCAGACTCAGTATTCCCCCTGCTTGTATGGTATGTGGTGCTGTCAGTGAGGCTTAGCATTAAGTCCTTCAGAGTACCAGAGATTTTCATTGAGGTTCCGAATAGTACAACTGTTGGTTCACTCAAGGGCGTGCCAGAAGAAAGCTCACTGGGACAGTGA

Coding sequence (CDS)

ATGATGATAACTGCAGGGATCACTACACTACTGCATTTGCCAGTTTGCTGGACTTTGGTCTTCAAATGTGGTCTTGGAAACCGAGGAGCTGCCCTTGCAACTGGTGTATCTTATTGGATTAATTCGTCAGACTCAGTATTCCCCCTGCTTGTATGGTATGTGGTGCTGTCAGTGAGGCTTAGCATTAAGTCCTTCAGAGTACCAGAGATTTTCATTGAGGTTCCGAATAGTACAACTGTTGGTTCACTCAAGGGCGTGCCAGAAGAAAGCTCACTGGGACAGTGA

Protein sequence

MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDSVFPLLVWYVVLSVRLSIKSFRVPEIFIEVPNSTTVGSLKGVPEESSLGQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26652.1Spo26652.1mRNA


Homology
BLAST of Spo26652.1 vs. NCBI nr
Match: gi|902206005|gb|KNA15338.1| (hypothetical protein SOVF_099140 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 89.4 bits (220), Expect = 3.700e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDS 46
           MMITAGITTLLHLPVCWTLVFKCGLGNRG +LATGVSYWINS  S
Sbjct: 75  MMITAGITTLLHLPVCWTLVFKCGLGNRGVSLATGVSYWINSQHS 119

BLAST of Spo26652.1 vs. NCBI nr
Match: gi|902206006|gb|KNA15339.1| (hypothetical protein SOVF_099140 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 89.4 bits (220), Expect = 3.700e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDS 46
           MMITAGITTLLHLPVCWTLVFKCGLGNRG +LATGVSYWINS  S
Sbjct: 89  MMITAGITTLLHLPVCWTLVFKCGLGNRGVSLATGVSYWINSQHS 133

BLAST of Spo26652.1 vs. NCBI nr
Match: gi|902172607|gb|KNA08147.1| (hypothetical protein SOVF_165200 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-12
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           MMITAGIT LLHLPVCW LVFK GLGNRGAALATGVSYWIN
Sbjct: 98  MMITAGITALLHLPVCWILVFKSGLGNRGAALATGVSYWIN 138

BLAST of Spo26652.1 vs. NCBI nr
Match: gi|902172608|gb|KNA08148.1| (hypothetical protein SOVF_165200 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-12
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           MMITAGIT LLHLPVCW LVFK GLGNRGAALATGVSYWIN
Sbjct: 98  MMITAGITALLHLPVCWILVFKSGLGNRGAALATGVSYWIN 138

BLAST of Spo26652.1 vs. NCBI nr
Match: gi|731334265|ref|XP_010678134.1| (PREDICTED: MATE efflux family protein 5-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-11
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDSVFPLLVWYVVLS 58
           MMI+AGI+TLLHLPVCW LVFK  LGNRGAALATG+SYWIN     F LL  YV  S
Sbjct: 191 MMISAGISTLLHLPVCWILVFKTSLGNRGAALATGISYWIN-----FILLALYVKFS 242

BLAST of Spo26652.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8N1_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_099140 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDS 46
           MMITAGITTLLHLPVCWTLVFKCGLGNRG +LATGVSYWINS  S
Sbjct: 89  MMITAGITTLLHLPVCWTLVFKCGLGNRGVSLATGVSYWINSQHS 133

BLAST of Spo26652.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R734_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_099140 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.600e-15
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDS 46
           MMITAGITTLLHLPVCWTLVFKCGLGNRG +LATGVSYWINS  S
Sbjct: 75  MMITAGITTLLHLPVCWTLVFKCGLGNRGVSLATGVSYWINSQHS 119

BLAST of Spo26652.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN86_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_165200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.300e-13
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           MMITAGIT LLHLPVCW LVFK GLGNRGAALATGVSYWIN
Sbjct: 98  MMITAGITALLHLPVCWILVFKSGLGNRGAALATGVSYWIN 138

BLAST of Spo26652.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLN6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_165200 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.300e-13
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           MMITAGIT LLHLPVCW LVFK GLGNRGAALATGVSYWIN
Sbjct: 98  MMITAGITALLHLPVCWILVFKSGLGNRGAALATGVSYWIN 138

BLAST of Spo26652.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CC33_BETVU (Protein DETOXIFICATION OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g112090 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.900e-12
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDSVFPLLVWYVVLS 58
           MMI+AGI+TLLHLPVCW LVFK  LGNRGAALATG+SYWIN     F LL  YV  S
Sbjct: 191 MMISAGISTLLHLPVCWILVFKTSLGNRGAALATGISYWIN-----FILLALYVKFS 242

BLAST of Spo26652.1 vs. ExPASy Swiss-Prot
Match: DTX15_ARATH (Protein DETOXIFICATION 15 OS=Arabidopsis thaliana GN=DTX15 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.200e-7
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           ++I +G+TT LH+ +CW LV K GLG RGAA+A  +SYW+N
Sbjct: 180 VVICSGVTTSLHVIICWVLVLKSGLGFRGAAVANAISYWLN 220

BLAST of Spo26652.1 vs. ExPASy Swiss-Prot
Match: DTX17_ARATH (Protein DETOXIFICATION 17 OS=Arabidopsis thaliana GN=DTX17 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.800e-7
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           + + +GITT LHL +CW  V K GLG RGAALA  VSYW N
Sbjct: 177 VFVCSGITTCLHLLLCWLFVLKTGLGYRGAALAISVSYWFN 217

BLAST of Spo26652.1 vs. ExPASy Swiss-Prot
Match: DTX16_ARATH (Protein DETOXIFICATION 16 OS=Arabidopsis thaliana GN=DTX16 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.400e-7
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDSVFPLLVWYVVLSVRL 60
           ++  +G+TT LH+ +CW LVFK GLG +GAALA  +SYW+N       LL  YV  S   
Sbjct: 179 VVFCSGVTTSLHVLLCWVLVFKSGLGFQGAALANSISYWLN-----VVLLFCYVKFSPSC 235

Query: 61  SI 63
           S+
Sbjct: 239 SL 235

BLAST of Spo26652.1 vs. ExPASy Swiss-Prot
Match: DTX14_ARATH (Protein DETOXIFICATION 14 OS=Arabidopsis thaliana GN=DTX14 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.400e-6
Identity = 21/41 (51.22%), Postives = 34/41 (82.93%), Query Frame = 1

		  

Query: 2   MITAGITTL-LHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           ++ + +++L +H+ +CW+LVFK GLG+ GAA+A GVSYW+N
Sbjct: 179 LVMSSVSSLCIHIVLCWSLVFKFGLGSLGAAIAIGVSYWLN 219

BLAST of Spo26652.1 vs. TAIR (Arabidopsis)
Match: AT2G34360.1 (MATE efflux family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.200e-8
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           ++I +G+TT LH+ +CW LV K GLG RGAA+A  +SYW+N
Sbjct: 180 VVICSGVTTSLHVIICWVLVLKSGLGFRGAAVANAISYWLN 220

BLAST of Spo26652.1 vs. TAIR (Arabidopsis)
Match: AT1G73700.1 (MATE efflux family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.100e-8
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           + + +GITT LHL +CW  V K GLG RGAALA  VSYW N
Sbjct: 177 VFVCSGITTCLHLLLCWLFVLKTGLGYRGAALAISVSYWFN 217

BLAST of Spo26652.1 vs. TAIR (Arabidopsis)
Match: AT5G52450.1 (MATE efflux family protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.700e-8
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWINSSDSVFPLLVWYVVLSVRL 60
           ++  +G+TT LH+ +CW LVFK GLG +GAALA  +SYW+N       LL  YV  S   
Sbjct: 179 VVFCSGVTTSLHVLLCWVLVFKSGLGFQGAALANSISYWLN-----VVLLFCYVKFSPSC 235

Query: 61  SI 63
           S+
Sbjct: 239 SL 235

BLAST of Spo26652.1 vs. TAIR (Arabidopsis)
Match: AT1G71140.1 (MATE efflux family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.100e-7
Identity = 21/41 (51.22%), Postives = 34/41 (82.93%), Query Frame = 1

		  

Query: 2   MITAGITTL-LHLPVCWTLVFKCGLGNRGAALATGVSYWIN 42
           ++ + +++L +H+ +CW+LVFK GLG+ GAA+A GVSYW+N
Sbjct: 179 LVMSSVSSLCIHIVLCWSLVFKFGLGSLGAAIAIGVSYWLN 219

BLAST of Spo26652.1 vs. TAIR (Arabidopsis)
Match: AT1G15150.1 (MATE efflux family protein)

HSP 1 Score: 50.1 bits (118), Expect = 8.900e-7
Identity = 18/40 (45.00%), Postives = 30/40 (75.00%), Query Frame = 1

		  

Query: 1   MMITAGITTLLHLPVCWTLVFKCGLGNRGAALATGVSYWI 41
           +++T+ +   +H+P+CW LV+K GLG+ G ALA  +SYW+
Sbjct: 184 LLVTSSVVFCIHVPLCWLLVYKSGLGHIGGALALSLSYWL 223

The following BLAST results are available for this feature:
BLAST of Spo26652.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902206005|gb|KNA15338.1|3.7e-1591.1hypothetical protein SOVF_0991... [more]
gi|902206006|gb|KNA15339.1|3.7e-1591.1hypothetical protein SOVF_0991... [more]
gi|902172607|gb|KNA08147.1|1.3e-1292.6hypothetical protein SOVF_1652... [more]
gi|902172608|gb|KNA08148.1|1.3e-1292.6hypothetical protein SOVF_1652... [more]
gi|731334265|ref|XP_010678134.1|1.1e-1171.9PREDICTED: MATE efflux family ... [more]
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BLAST of Spo26652.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R8N1_SPIOL2.6e-1591.1Uncharacterized protein (Fragm... [more]
A0A0K9R734_SPIOL2.6e-1591.1Uncharacterized protein (Fragm... [more]
A0A0K9QN86_SPIOL9.3e-1392.6Uncharacterized protein (Fragm... [more]
A0A0K9QLN6_SPIOL9.3e-1392.6Uncharacterized protein (Fragm... [more]
A0A0J8CC33_BETVU7.9e-1271.9Protein DETOXIFICATION OS=Beta... [more]
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BLAST of Spo26652.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DTX15_ARATH2.2e-756.1Protein DETOXIFICATION 15 OS=A... [more]
DTX17_ARATH3.8e-760.9Protein DETOXIFICATION 17 OS=A... [more]
DTX16_ARATH8.4e-746.7Protein DETOXIFICATION 16 OS=A... [more]
DTX14_ARATH5.4e-651.2Protein DETOXIFICATION 14 OS=A... [more]
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BLAST of Spo26652.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G34360.11.2e-856.1MATE efflux family protein[more]
AT1G73700.12.1e-860.9MATE efflux family protein[more]
AT5G52450.14.7e-846.7MATE efflux family protein[more]
AT1G71140.13.1e-751.2MATE efflux family protein[more]
AT1G15150.18.9e-745.0MATE efflux family protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11206MULTIDRUG RESISTANCE PROTEINcoord: 1..41
score: 5.3
NoneNo IPR availablePANTHERPTHR11206:SF137SUBFAMILY NOT NAMEDcoord: 1..41
score: 5.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0008033 tRNA processing
biological_process GO:0016311 dephosphorylation
biological_process GO:0006651 diacylglycerol biosynthetic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0048868 pollen tube development
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0032501 multicellular organismal process
biological_process GO:0048856 anatomical structure development
biological_process GO:0008152 metabolic process
cellular_component GO:0005777 peroxisome
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0044446 intracellular organelle part
cellular_component GO:0031090 organelle membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009507 chloroplast
molecular_function GO:0016874 ligase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008195 phosphatidate phosphatase activity
molecular_function GO:0047874 dolichyldiphosphatase activity
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0004540 ribonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression
   



Co-expression