Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCATACTCACACTGCCATTAGTAATCTCTGTCCTCAAACCCCATAACTATAAACCCCAGAATTTCTCTTTTATTCTTCACCCAACTCGTCATTTTTGCTTTAAACCCCTCCATCGTCGCTTTTTTGCCTCTTCAAGTGCCGGCGCTTCCACTTTGCAGCACAACTTTTCCGACAATGGCGACCCCAATTCAGTTCCTAGTACTGCCTCTGTGCCCACTTTTCAACAAGCCATTCAGCGGCTTCAGGTTTTCTTCAAATTCTCTCTCTTTTGACTTTTGGGTCATACTTCAATAAAGTCTTTGATCTTTCATTGTTGCCAATATAAATATGGAAATGTTATGACTTAGCTCTTACTTGATTCATCGCAATGTATATTTTAATTCATCCAAGTTTATGATTTTTACTAGCATGCAATTAAAGATATTAATGTTCGAAAACAGTGTTTGGAGACAATGTAAGTCAATCAGGAAGCTCATTTGGAAATGGAGAAGTAGTGTATTAGTATGTAAAATGATTGTATTAATCTAATTAGAAAATATTGGTTTTGGTACTTACTCTCATTAGAGTGATCTTTGAAATGCTAGTTTCCTGAATAAATTATGGTGTCTTATCTCCTTAGGATTTCAGACTAAGGGAGTGATGTTATAGACTAAGGGAGTGATGTTATGCAATTGGGATAATATATATCTTAGTTGGGGTGATTGGACGTATGAAACCTTTGGGTTTCTTTGAAGTTTCGCATTTTCTTTCGTTGGGGAACCTAGATCATTTGTTGTAGGGGCAAAGAGAAGCTATACATCAAGAAGTGTTAATGGACTGCTTTTTCTATGATTGTCCTTCTTCTCGGATGTGAATTGGTTTAGTTTGTGAGTCTTGGGGCATTAGGCGTGGGTGACAAACCAATAAAAGGCACCATCTTGCTGCGTGGGTGTCTACCTTTGAAAATATCTGCAATAATGCCTTAAAGAATTTGATTGTGGCCTAACGTGTTTCCTGGATATAATAGACCGTTTGATTCACTTTAATATTTGGGAAAGCAAATTGGGTAAATGATTACACGAGGATAGATGGCCATGAAAGTATAGAATAGGACTAGAAGTTAAGGCTGTCAAACGTGTTGTTTCTTAGGACTTTGGATATCTCTAGTTTATGTGTGAAAAAACCTTGATGGCCATGGAGGTGTTAGGGGATAGTAGTTACGGATTCCTAGAACAAAAACAAAATCCTACTGTGAACTGCTGCTTGCTGAGCCTGGAAGTCATTTTGATCCATGAAGTAATTGAGAACTTGTTCTATATCTAAAACAGTGGTTGCTACCAGACCATGCCTTCATTGTCATGATCATAGAAATACAAATGGTTCAAAGTGTTAGTGTAGTGTGTCAGACCTAACAAAGCCAGAACCCTCTTTTATTGAAGATCCGAACATTACATTTCCTCGAAAAGATTGGAAACAGTCAGCGATGTCCTTGCAGTTTTATCTTTTAAGGTTCTCGATGGATCTGAAAAATATATGTATTATATTTGAAGGGAAGGACAATGTAGTGAAGCATTTAATTTCATCTGTTAATAATCTCTTATCTAGTGACTCTTCCAGCTTAAATTACTAAGCTTTTGGGATATGTGATATGTATGCATTTTAGTTAACCAAACAATTGAGAGGTAACTATGCAGTTTATTCTTTTATCCAGATTAAAGCTGAATAATGGCAACTGTTTCAGTTCTATCTGTCATTTAAAGACAATACTGTATCCCTTTCTATCAAGTATTTCATTTCCCTGAGAGACAATAACTGTTTGAACTTTTAAGCATTATTCTACCAAAAGTACGGCACCAAAGCTCAGAAAGTCATTCTTGGTGATGGTTTTGACAACAAATTCAGCATCTATGCTTTTCTCTTTCGGGGTCAAGTAATTATATAAATTAAATAGTGATCTGATCATAGGATGTCTATTGCCCCTTCCTGAATTAGTTATTTTGAGTTTGGACATTGAATTCCATTCACATATGACTGGTATTTTTTTCACGTCATTTCATTTTTTGGTACCTGCAGGAATATTGGGCTTCTGTTGGGTGTGCAGTTATGCAATGCAGCAACACTGAGGTAATCATCTTAATTTTCTGTACAAAAGCAGATTCTTTCTGTGGTTTGCACCTTCTTTGTTTAACACCTTCTGTTAGGGTGTCCCCACTTGGTGCATGCAGTGGGTTTGAAATACATGTAACTTTTTCCCCCATGATGGCTTTCATAAAACAGATACAAATGTTACTCCCAGAACATTTATACAAAAAAGACAATTTATTCTTGTTACTTTCTTTGGTGCTTTTACTTCTTAAATGTTTATAGCTTATCCGAGTTTTTTCTTTGCCTTTGAGATACTTCATTGAGCTCCTTGCATTTCTCAGGTTGGAGCTGGGACGATGAATCCCCTGACATATCTGAGGGTCCTTGGTCCAGAGCCATGGAATGTTGCGTAAGTATACACTAAGAACATTTTGTGTAGCTGTTCCTTTTTTTTTTTGGGCCTAGGTGGTACAAAATGTTTTATCATTTTTGATTCAATGTTTATCATTTTAGTTCCTGCCATCCTTCCGCTATATATATTTGCATCTTAGAAAAGCTTTGTGCTAAAAGGTGAATTTAATCATTATATCTTTTCTGAATGAGTAAAGTGAACTCATACTACTAAAATGGAGTTGTATATGTCATGGACGCCTTACAGCAGAAATATTTTTGGTTTGTCCTGATGCATCTACTACGTTTGCTAGAATCTTAAAATCGAACTCCTTACATGTTTGCACCCCTTAGTTTGAGGTTCTTGGTTTATGGTAGGATATTGAGATTGTTATTCAGGAGAGACAAAGTCCAATTGAGAAGCAAAGGCTTAATCATTTGGTATATGGTAGATTTACGTTTATTTTTCTTTTGCTTATTTTTTTTTAATATTTATTAAGTTGGTGGCATGTGCTACGTACTGGTTCAAAAATCTTATACAAATTTCCTTTTTTTCAAAAAAATATGATTCAGTAATGACATAGTTAAACTACTAAAGATTATACATCCTCCATTCTTTACTTGCAACCCAGTGGGATGGAACAAAACCGAAGGAAAAGTTGATAAGAAGTCAAAATCCCAAATTTGCCTGCCCAATAATTATTCTCTCTCTCCTCCTTACCAGCCCCATCCAACCAAGAATCTACCATTTTCTCCACCAACCCACCTCCCAAATTTTCCTGCACAACAATTACTCTCTCTCTCCCCCTTACCAGCCCCATCCAACCGACAATCTACCATTTTCTCGACCAATCCACCTCCCACCTGATATAGGCCAACCACCAGTTCACTGTCTTATCCCACCACCCACCCATCCACCTCTTAAGAATATTAGTGCTTGCCATACTTTGGTGCAATGTCTTTCTAGTGATTTCAATAATAAATATCTTCTCTTATGGATGGTTGCAATAGTTCAATGGGAAGTGTTTGCACATGTTTAGATGTTGACCTTATATATCGAATTTCGGTGTCAATTAATGGAAGAGGGTGAATTCCTTCTGACATGTCAGTTTCTGAGGACATGACTCATGCCACAATTCACAATAACTGGTGATGAATGCAGTAAGATATGGTCATGCCCGTAAGAGATTTATCTTGCATCTTCATCATGGCATCCACTATGGAGTTGTAGCTGTTTCTGTTTTCCTGTGATTTCTATTGAAATTCATCTGTTATGTAGGTTGCTCTAGCATTGATATGAGTTTCTTTTGGAAAGTTATGTAGAGCCTAGCATCCGGCCTGACGATAGTCGCTATGGGGAAAATCCAAACCGTCTTCAACGCCACACCCAATTTCAGGTAGAGCTTTTATTATTAATGTATCCTAACAAGAAAAACATGTGAGTCTTGAAAAACATTCCTTTTATGGGTTTTAAGTGAATTATTACTCCTATTTGGAGTTTGATCTCAGGTTATATTGAAACCAGATCCTGGGAATTCTCAAGATCTCTTCATCCGGAGCCTATCTGCTTTAGGTAGCTATTTTAATTTGTTTCTCTTTCTGTACTTGTTAGTTATCTTACTGAGCCAAAAACATCGTTCACGCGTGAGGTAGGCTAGAGCCACAAAAAGGCCCTCAGATCATCTTTTGTAATTTCACATAACAATCAGGAGGAGATGAGGGTCACCTGGATGCAACATTTAACTCCAAAATACGACCTCGCCAAAAAATAAAAAATGAAAATAATGATAGCAATATGTGAACAAGCTCTGTCCTTAAATATCCTCTGCTTTTTTCTTCTTTTCATGCACACCATCAAGTCAGAAACAGTGATCCAAACCTACTTCATTCTTTTTTTCCTTGCCTCAAATCCAAATGAGGTTGAACCCAATTCAACCTAGATAAACAAAGGATAGTTACCAAAGACAAAGAGAAAGGGTTACACTTACCTTTTGATTGTTAGAAAAATAGCAACCATGAGCTATTTGGTGCACATTGAAGGTTTTGTTGTTGTTTTGGTGCTCATATAGATTCCCATCGTACCATCTCTGTCTTAGTTATCCTTTTTTGCATCATTTCAGGTGTTAATGTCAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGTCCGGTAATTTTTCTTTTTCACAGCTGGACCAAGCATTTCCTGAATTCTTTTGTTACGAGAGTGGAGATTATTTGGCATATGATGATGGCCTAACTGCTGTGCTTGCTGGTTGAATTTATGAAGTTCTCCGCAAGTCTGCAGTGGTGTCTCTTAGCATCTCACTGTTGTTTTACTTTGTCACTACTTATTTTTAGGTCCTTGGTGCGTGGGGATTGGGTTGGGAAGTTTGGATGGATGGGATGGAGATCACTCAATTTACGTACTTCCAGCAG ATGGGCATACTCACACTGCCATTAGTAATCTCTGTCCTCAAACCCCATAACTATAAACCCCAGAATTTCTCTTTTATTCTTCACCCAACTCGTCATTTTTGCTTTAAACCCCTCCATCGTCGCTTTTTTGCCTCTTCAAGTGCCGGCGCTTCCACTTTGCAGCACAACTTTTCCGACAATGGCGACCCCAATTCAGTTCCTAGTACTGCCTCTGTGCCCACTTTTCAACAAGCCATTCAGCGGCTTCAGGAATATTGGGCTTCTGTTGGGTGTGCAGTTATGCAATGCAGCAACACTGAGGTTGGAGCTGGGACGATGAATCCCCTGACATATCTGAGGGTCCTTGGTCCAGAGCCATGGAATGTTGCTTATGTAGAGCCTAGCATCCGGCCTGACGATAGTCGCTATGGGGAAAATCCAAACCGTCTTCAACGCCACACCCAATTTCAGGTTATATTGAAACCAGATCCTGGGAATTCTCAAGATCTCTTCATCCGGAGCCTATCTGCTTTAGGTGTTAATGTCAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGTCCGGTCCTTGGTGCGTGGGGATTGGGTTGGGAAGTTTGGATGGATGGGATGGAGATCACTCAATTTACGTACTTCCAGCAG ATGGGCATACTCACACTGCCATTAGTAATCTCTGTCCTCAAACCCCATAACTATAAACCCCAGAATTTCTCTTTTATTCTTCACCCAACTCGTCATTTTTGCTTTAAACCCCTCCATCGTCGCTTTTTTGCCTCTTCAAGTGCCGGCGCTTCCACTTTGCAGCACAACTTTTCCGACAATGGCGACCCCAATTCAGTTCCTAGTACTGCCTCTGTGCCCACTTTTCAACAAGCCATTCAGCGGCTTCAGGAATATTGGGCTTCTGTTGGGTGTGCAGTTATGCAATGCAGCAACACTGAGGTTGGAGCTGGGACGATGAATCCCCTGACATATCTGAGGGTCCTTGGTCCAGAGCCATGGAATGTTGCTTATGTAGAGCCTAGCATCCGGCCTGACGATAGTCGCTATGGGGAAAATCCAAACCGTCTTCAACGCCACACCCAATTTCAGGTTATATTGAAACCAGATCCTGGGAATTCTCAAGATCTCTTCATCCGGAGCCTATCTGCTTTAGGTGTTAATGTCAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGTCCGGTCCTTGGTGCGTGGGGATTGGGTTGGGAAGTTTGGATGGATGGGATGGAGATCACTCAATTTACGTACTTCCAGCAG MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDNGDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|902238580|gb|KNA25234.1| (hypothetical protein SOVF_008400 [Spinacia oleracea]) HSP 1 Score: 457.2 bits (1175), Expect = 1.600e-125 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|731347800|ref|XP_010685169.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 420.2 bits (1079), Expect = 2.100e-114 Identity = 199/216 (92.13%), Postives = 208/216 (96.30%), Query Frame = 1
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|359489209|ref|XP_002270774.2| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Vitis vinifera]) HSP 1 Score: 337.8 bits (865), Expect = 1.400e-89 Identity = 165/222 (74.32%), Postives = 183/222 (82.43%), Query Frame = 1
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|970000909|ref|XP_015055657.1| (PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Solanum pennellii]) HSP 1 Score: 337.0 bits (863), Expect = 2.400e-89 Identity = 171/217 (78.80%), Postives = 180/217 (82.95%), Query Frame = 1
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|460367768|ref|XP_004229742.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Solanum lycopersicum]) HSP 1 Score: 337.0 bits (863), Expect = 2.400e-89 Identity = 169/217 (77.88%), Postives = 180/217 (82.95%), Query Frame = 1
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S209_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008400 PE=3 SV=1) HSP 1 Score: 457.2 bits (1175), Expect = 1.100e-125 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BT17_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g168730 PE=3 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 1.500e-114 Identity = 199/216 (92.13%), Postives = 208/216 (96.30%), Query Frame = 1
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: K4AYW1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 1.700e-89 Identity = 169/217 (77.88%), Postives = 180/217 (82.95%), Query Frame = 1
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A067K9B0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14636 PE=3 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 3.700e-89 Identity = 166/218 (76.15%), Postives = 180/218 (82.57%), Query Frame = 1
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A067HCB2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001359mg PE=3 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 9.100e-88 Identity = 165/217 (76.04%), Postives = 175/217 (80.65%), Query Frame = 1
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGM2_ARATH (Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EDD1 PE=1 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 2.300e-84 Identity = 157/212 (74.06%), Postives = 170/212 (80.19%), Query Frame = 1
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_GEOLS (Glycine--tRNA ligase alpha subunit OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyQ PE=3 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 6.700e-60 Identity = 103/143 (72.03%), Postives = 116/143 (81.12%), Query Frame = 1
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_MOOTA (Glycine--tRNA ligase alpha subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=glyQ PE=3 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 2.000e-59 Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_DESDA (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=glyQ PE=3 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 2.000e-59 Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_DESAG (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio alaskensis (strain G20) GN=glyQ PE=3 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 9.700e-59 Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
BLAST of Spo26671.1 vs. TAIR (Arabidopsis)
Match: AT3G48110.1 (glycine-tRNA ligases) HSP 1 Score: 313.2 bits (801), Expect = 1.300e-85 Identity = 157/212 (74.06%), Postives = 170/212 (80.19%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26671.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo26671.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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