Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATACCCGTGTAGGCCGCGTTAAATCTGCGACATTAAATCTGTAAATGAGCATTAAAAAAATCACCATTTTACCAATGAATGGCAAATAGTCGCATACCCACCACCTCAGCAAATCTCCTCTCCACATGGGAAAAACTGTCATCGTCCTTATTACAACACTCGCTTCTCTTCCTTAAAAGGAGAGAGAAGAGAACCTGAGATTCAGACACACGCACGAACCCCCGATTCACCACCCTTTATCTCCCTCCTCTTCCTCCCTCTCTTTCTCTCTCCTCAAAATGGGTTTCCAGGGAAACGATTCATCAGACAACAAACCTTTCAAGTTCTTAATCTATGGCCGAACCGGCTGGATCGGTGGTCTACTTGGCAAGCTTTGCGATTCCCAAGGCATCACCTACACCTACGGTTCAGGCCGCTTGGAAAACCGCAGTTCCTTGGAGGCGGATATCGCGGCGGTGAAACCCACCCATGTTTTTAACGCCGCCGGAGTCACCGGCCGTCCTAACGTTGATTGGTGCGAGTCCCACAAAGTTGAGACAATTCGTGCCAACGTTGTTGGGACTTTGACTTTGGCTGATGTTTGTCGTCAAAACGGCCTCGTCTTGATCAATTATGCAACTGGTTGTATTTTTGAGTATGATGATAAGCATCCCATTGATTCTGGGGTTGGATTCAAGGAAGAGGATACTCCTAATTTTATCGGGTCTTATTACTCCAAGACCAAAGCTATGGTATATATGCTCTCACTTTTTTGATTTCATTTTGATTTTTAATTTGACATGATATGATATGTAAATTTGGTAATTTAAAAATGTGGGTTGATTGATTAGAGGTTTGATGTTATTGTTGATTAAACTTGAGATCTTATGTTGGTAATGGTGGATCTTTGATCTTTGATCTTTGATGTAGAGCTACATACAACCGGGTGCACCTTATAATTTGTGGTTTTTGTGTGTCGGTCGGTCTAATCGGGACTCTTCATTTTGGCGCAAGTGCTCGTGTCGGACCCTAAACACACCGACATGCGTATGGAGTACGGACATTTTACTTTTAGACCAAAGACGAACTTTTTCACAGAATAGTTGTAGTAACATTTGGACGCTTACCCAGTTACCCGTGTTTGATATGAGTAAATTATTTCGTTGATGTGATTTATATGATATGATATAGCAGTATTGAGTCTGGATTTGAATTTTGAGAATGTGCTCCATTGTTGTTTTGGATTGAACAAGGATGTTAAATTACTGATTGATCTAGTGAAGAGGATTGCAATGGAGTTTGGATTTACATTTTTTATTCCATGTTGTTAGGATTGAGATGGGATTGGAACAAATATTTCATGAATCTTGTGTTGGGTCTTTGTGTGAGTCATTGCGTCCACAATGAAAGAAATGTGATCAAGTGCTCAAAGTATAAACTTAGTGTTCATATCGCAGACTAGTCTTGATATGGAGCTACCATTGAAAGAAATGTGATGAAGTCATTAAGTGCTCAAAGTATAAACTTAGTGTCTTGATATGGAACTACCCTTGGGTTCGGTCCACACTCTGTTTTTCGTAAATCTCGATGATATGAATGTGTTTTGTTGGACAAGATCACTTATATAACCTAGGAGATGGGAAAATCTGATTGTCTCTGTTGTTTTCATGGTCATGCTTAGTTTTGCAGTGATAAATGCAGAATGTCAGGACATTTATCTCTGTTGTTTTCATGGTGATAAATGTAGAATCTGAGGAAATAGATGTGATAAATGCAGAATGTCAGGACATTTATCTCTGTTGTTTTCATGGTGATAAATGTAGAATCTGAGGAAATAGATGTGATAAATGCGAGGAAGTCTTATTCTATACTAGGTATACCATTGAAATGGTATACTAATATTCTGCATTTTTATTTAGTACCAAACCACATAGTTTGGTACAAGAAAAATAGTTGTATCTTCTCATGTGATACCAAACAACATAGTTTGGTAACGTGGTTTCAGTTTTCTTTGGTTCCAAACAACATACGTAGTAGTTTGGTACTCACAAGTCAAAGATAAATGTTATTTTTCGTGGCCCATACTCAATTTATTACATGAAATTACCATCTAGCCTTTAATATACCAATTGAAGTTACTATTTTCCCCTTAGTATGCCATTTTAATGGTATACCCAGTATAAGTTCAGAAAACCTCGATAAATGCAGAACGTGAGGACATTTGTCTGACATTTTAGATAATTGTAGGGCTCTAAGTTAGAGGTGGTAAGCACTGCTGTTGCAGTTTAGTCATAAACTTTTGTGGTTGTACTGTATTTGCATAAACTCCGAACTTTGGGTGGCTGGTTGCTTAGGAACATATTCCGTAATAGTTGAAGCAAAGCTTTTGGGGTGACGCGAAGTTGCCCTCACACGCTATAGTCTTACTGGATCAGGCAGGCAAAGATAGCTTCCTCAATTCACTGTCTGAAAATGCCAATGTTTGACCTTTTGGATTTCATGTTCTCCATTTATGTTTAGTGGCCAAAAACAGAGAACTCTGCATTTGCTCCCACATTTCAGATCAAAAACTGTATACTCTCCGAAAATGCAAATGTTTGACCGTTTGGGGTTCATTTCTCCATTTGTGTTTAGTGGCCAGAAACAGAAAACTCTGCAATTGCTCCCACATTCCTGATCAAAAACTGTTTACTTTAAGTTCCTGTTATGGAAAATGTTTTTGTTTCTGTTTCTTTTCACATTTGTCGAGTGGCTGTTAATCCATACTTTCTCTGAGTCTTTTGCCCGATGAACTGATGCAAGTGTGCCATGTCTAGGTTGAGGATTTACTTAGCAACTATGAGAACGTTTGCACATTGAGGGTGCGTATGCCAATCTCCTCTGATTTATCCAATCCTCGCAACTTCATCACCAAGATCGCTCGTTATGAGAAGGTGGTCAACATACCAAACTCAATGACAGTCTTGGATGAACTTCTTCCCATTTCCATCGAGATGGCGAAGAGGAACCTTACAGGAATCTACAACTTCACAAACCCTGGTGTGGTTAGCCACAACGAGATCTTAGAGATGTACAGGGATTACATTGACCCTAAATTTACATGGAAAAATTTCACCCTTGAGGAACAGGCTAAGGTGATCATTGCTCCAAGAAGCAACAACGAGCTTGAGACTACCAAGATGAAGCAAGAATTTCCGGAACTTCTATCCATCAAGGAGTCTCTTATAAAGTACGTGTTTGAGCCCAACAAGAAGACTTCTGAAACTACAGCTTGATTGATGATAGTCTAGGTCAGAACTTCTACTTCCAACTCTGTCATATACTCTGTACTTTGTATTGCTTTATTTGAACTGAGTTGAAGGGGGTTTGCATACTTTTTCATCAATTTAGAACTATTGTTCTTGATAATTACGATTGATTGTTGCCATTATGTTCTATGTCTATTTGTTTCTTCTTCTCAAGCACAAAAGGAAAAGGAGTGGTGTTTTGTATTTGTAACAATTGGATTATGAATAAAGTAGTTGAGGTTGAGATTTATGTCAAAATTGCAATTCTTTGGTTATTTGACTATTCAGTCAATCAGCTAAGTTTTGAATTGTTATTCAGGGTTAAGTACTTAGGCTAGTATGGTTGACATTCTAATACATGGGAAGTTTCATACTTTCATTTCCTAGAAGTGAAGAGCAA TATACCCGTGTAGGCCGCGTTAAATCTGCGACATTAAATCTGTAAATGAGCATTAAAAAAATCACCATTTTACCAATGAATGGCAAATAGTCGCATACCCACCACCTCAGCAAATCTCCTCTCCACATGGGAAAAACTGTCATCGTCCTTATTACAACACTCGCTTCTCTTCCTTAAAAGGAGAGAGAAGAGAACCTGAGATTCAGACACACGCACGAACCCCCGATTCACCACCCTTTATCTCCCTCCTCTTCCTCCCTCTCTTTCTCTCTCCTCAAAATGGGTTTCCAGGGAAACGATTCATCAGACAACAAACCTTTCAAGTTCTTAATCTATGGCCGAACCGGCTGGATCGGTGGTCTACTTGGCAAGCTTTGCGATTCCCAAGGCATCACCTACACCTACGGTTCAGGCCGCTTGGAAAACCGCAGTTCCTTGGAGGCGGATATCGCGGCGGTGAAACCCACCCATGTTTTTAACGCCGCCGGAGTCACCGGCCGTCCTAACGTTGATTGGTGCGAGTCCCACAAAGTTGAGACAATTCGTGCCAACGTTGTTGGGACTTTGACTTTGGCTGATGTTTGTCGTCAAAACGGCCTCGTCTTGATCAATTATGCAACTGGTTGTATTTTTGAGTATGATGATAAGCATCCCATTGATTCTGGGGTTGGATTCAAGGAAGAGGATACTCCTAATTTTATCGGGTCTTATTACTCCAAGACCAAAGCTATGGTTGAGGATTTACTTAGCAACTATGAGAACGTTTGCACATTGAGGGTGCGTATGCCAATCTCCTCTGATTTATCCAATCCTCGCAACTTCATCACCAAGATCGCTCGTTATGAGAAGGTGGTCAACATACCAAACTCAATGACAGTCTTGGATGAACTTCTTCCCATTTCCATCGAGATGGCGAAGAGGAACCTTACAGGAATCTACAACTTCACAAACCCTGGTGTGGTTAGCCACAACGAGATCTTAGAGATGTACAGGGATTACATTGACCCTAAATTTACATGGAAAAATTTCACCCTTGAGGAACAGGCTAAGGTGATCATTGCTCCAAGAAGCAACAACGAGCTTGAGACTACCAAGATGAAGCAAGAATTTCCGGAACTTCTATCCATCAAGGAGTCTCTTATAAAGTACGTGTTTGAGCCCAACAAGAAGACTTCTGAAACTACAGCTTGATTGATGATAGTCTAGGTCAGAACTTCTACTTCCAACTCTGTCATATACTCTGTACTTTGTATTGCTTTATTTGAACTGAGTTGAAGGGGGTTTGCATACTTTTTCATCAATTTAGAACTATTGTTCTTGATAATTACGATTGATTGTTGCCATTATGTTCTATGTCTATTTGTTTCTTCTTCTCAAGCACAAAAGGAAAAGGAGTGGTGTTTTGTATTTGTAACAATTGGATTATGAATAAAGTAGTTGAGGTTGAGATTTATGTCAAAATTGCAATTCTTTGGTTATTTGACTATTCAGTCAATCAGCTAAGTTTTGAATTGTTATTCAGGGTTAAGTACTTAGGCTAGTATGGTTGACATTCTAATACATGGGAAGTTTCATACTTTCATTTCCTAGAAGTGAAGAGCAA ATGGGTTTCCAGGGAAACGATTCATCAGACAACAAACCTTTCAAGTTCTTAATCTATGGCCGAACCGGCTGGATCGGTGGTCTACTTGGCAAGCTTTGCGATTCCCAAGGCATCACCTACACCTACGGTTCAGGCCGCTTGGAAAACCGCAGTTCCTTGGAGGCGGATATCGCGGCGGTGAAACCCACCCATGTTTTTAACGCCGCCGGAGTCACCGGCCGTCCTAACGTTGATTGGTGCGAGTCCCACAAAGTTGAGACAATTCGTGCCAACGTTGTTGGGACTTTGACTTTGGCTGATGTTTGTCGTCAAAACGGCCTCGTCTTGATCAATTATGCAACTGGTTGTATTTTTGAGTATGATGATAAGCATCCCATTGATTCTGGGGTTGGATTCAAGGAAGAGGATACTCCTAATTTTATCGGGTCTTATTACTCCAAGACCAAAGCTATGGTTGAGGATTTACTTAGCAACTATGAGAACGTTTGCACATTGAGGGTGCGTATGCCAATCTCCTCTGATTTATCCAATCCTCGCAACTTCATCACCAAGATCGCTCGTTATGAGAAGGTGGTCAACATACCAAACTCAATGACAGTCTTGGATGAACTTCTTCCCATTTCCATCGAGATGGCGAAGAGGAACCTTACAGGAATCTACAACTTCACAAACCCTGGTGTGGTTAGCCACAACGAGATCTTAGAGATGTACAGGGATTACATTGACCCTAAATTTACATGGAAAAATTTCACCCTTGAGGAACAGGCTAAGGTGATCATTGCTCCAAGAAGCAACAACGAGCTTGAGACTACCAAGATGAAGCAAGAATTTCCGGAACTTCTATCCATCAAGGAGTCTCTTATAAAGTACGTGTTTGAGCCCAACAAGAAGACTTCTGAAACTACAGCTTGA MGFQGNDSSDNKPFKFLIYGRTGWIGGLLGKLCDSQGITYTYGSGRLENRSSLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRQNGLVLINYATGCIFEYDDKHPIDSGVGFKEEDTPNFIGSYYSKTKAMVEDLLSNYENVCTLRVRMPISSDLSNPRNFITKIARYEKVVNIPNSMTVLDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPKFTWKNFTLEEQAKVIIAPRSNNELETTKMKQEFPELLSIKESLIKYVFEPNKKTSETTA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26925.1 vs. NCBI nr
Match: gi|902234906|gb|KNA23644.1| (hypothetical protein SOVF_023050 [Spinacia oleracea]) HSP 1 Score: 619.4 bits (1596), Expect = 3.400e-174 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo26925.1 vs. NCBI nr
Match: gi|731331272|ref|XP_010676576.1| (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 571.6 bits (1472), Expect = 8.000e-160 Identity = 272/303 (89.77%), Postives = 290/303 (95.71%), Query Frame = 1
BLAST of Spo26925.1 vs. NCBI nr
Match: gi|224071686|ref|XP_002303557.1| (hypothetical protein POPTR_0003s12000g [Populus trichocarpa]) HSP 1 Score: 549.3 bits (1414), Expect = 4.300e-153 Identity = 263/300 (87.67%), Postives = 280/300 (93.33%), Query Frame = 1
BLAST of Spo26925.1 vs. NCBI nr
Match: gi|255537241|ref|XP_002509687.1| (PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Ricinus communis]) HSP 1 Score: 546.6 bits (1407), Expect = 2.800e-152 Identity = 258/300 (86.00%), Postives = 283/300 (94.33%), Query Frame = 1
BLAST of Spo26925.1 vs. NCBI nr
Match: gi|661886462|emb|CDP09826.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 545.4 bits (1404), Expect = 6.200e-152 Identity = 257/299 (85.95%), Postives = 282/299 (94.31%), Query Frame = 1
BLAST of Spo26925.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXK8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_023050 PE=4 SV=1) HSP 1 Score: 619.4 bits (1596), Expect = 2.300e-174 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 1
BLAST of Spo26925.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJC7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g101210 PE=4 SV=1) HSP 1 Score: 571.6 bits (1472), Expect = 5.600e-160 Identity = 272/303 (89.77%), Postives = 290/303 (95.71%), Query Frame = 1
BLAST of Spo26925.1 vs. UniProtKB/TrEMBL
Match: A9PD02_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12000g PE=2 SV=1) HSP 1 Score: 549.3 bits (1414), Expect = 3.000e-153 Identity = 263/300 (87.67%), Postives = 280/300 (93.33%), Query Frame = 1
BLAST of Spo26925.1 vs. UniProtKB/TrEMBL
Match: B9RC03_RICCO (NAD dependent epimerase/dehydratase, putative OS=Ricinus communis GN=RCOM_1683000 PE=4 SV=1) HSP 1 Score: 546.6 bits (1407), Expect = 1.900e-152 Identity = 258/300 (86.00%), Postives = 283/300 (94.33%), Query Frame = 1
BLAST of Spo26925.1 vs. UniProtKB/TrEMBL
Match: A0A068UN06_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00030298001 PE=4 SV=1) HSP 1 Score: 545.4 bits (1404), Expect = 4.300e-152 Identity = 257/299 (85.95%), Postives = 282/299 (94.31%), Query Frame = 1
BLAST of Spo26925.1 vs. ExPASy Swiss-Prot
Match: RMLCD_ARATH (Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1) HSP 1 Score: 529.6 bits (1363), Expect = 2.200e-149 Identity = 249/292 (85.27%), Postives = 273/292 (93.49%), Query Frame = 1
BLAST of Spo26925.1 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1) HSP 1 Score: 505.0 bits (1299), Expect = 5.800e-142 Identity = 239/296 (80.74%), Postives = 269/296 (90.88%), Query Frame = 1
BLAST of Spo26925.1 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1) HSP 1 Score: 488.0 bits (1255), Expect = 7.300e-137 Identity = 227/295 (76.95%), Postives = 263/295 (89.15%), Query Frame = 1
BLAST of Spo26925.1 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1) HSP 1 Score: 485.7 bits (1249), Expect = 3.600e-136 Identity = 225/291 (77.32%), Postives = 259/291 (89.00%), Query Frame = 1
BLAST of Spo26925.1 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 2.600e-57 Identity = 118/289 (40.83%), Postives = 175/289 (60.55%), Query Frame = 1
BLAST of Spo26925.1 vs. TAIR (Arabidopsis)
Match: AT1G63000.1 (nucleotide-rhamnose synthase/epimerase-reductase) HSP 1 Score: 529.6 bits (1363), Expect = 1.200e-150 Identity = 249/292 (85.27%), Postives = 273/292 (93.49%), Query Frame = 1
BLAST of Spo26925.1 vs. TAIR (Arabidopsis)
Match: AT1G78570.1 (rhamnose biosynthesis 1) HSP 1 Score: 505.0 bits (1299), Expect = 3.300e-143 Identity = 239/296 (80.74%), Postives = 269/296 (90.88%), Query Frame = 1
BLAST of Spo26925.1 vs. TAIR (Arabidopsis)
Match: AT1G53500.1 (NAD-dependent epimerase/dehydratase family protein) HSP 1 Score: 488.0 bits (1255), Expect = 4.100e-138 Identity = 227/295 (76.95%), Postives = 263/295 (89.15%), Query Frame = 1
BLAST of Spo26925.1 vs. TAIR (Arabidopsis)
Match: AT3G14790.1 (rhamnose biosynthesis 3) HSP 1 Score: 485.7 bits (1249), Expect = 2.000e-137 Identity = 225/291 (77.32%), Postives = 259/291 (89.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26925.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26925.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26925.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo26925.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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