Spo27062 (gene)

Overview
NameSpo27062
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02326 : 37125 .. 38807 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTATGGACTATGGACTATGGACTATGGACTCTTGGAGTATAAGGATTCAGATATTGTACAAGTGCAACATGTGAAGGGATGTGGAAGTGTAAGTATACACCAAATGTGTTACGGATCTTCTTAAAAATATTGCTCAGTCGCACTAAAAAAGTATACTCCGTATTGTTTACACCATTGGTTAATGGTTATAGACACAAAAAATATATAACAAAACAAGAAAACCAAAACTTTGAGTAATTTCATCCACCAAAATAATTGACATGGGTTCGATAAATCAATATAGCTCGATAATTACTTTGGGTAATCTATAATATATTTCCGTGAACACCAAAACATAATCTTACGTGCACGTGTCCATGCCTCGTGCCCTGTGATCTCGAGACTATATTGGATTTTACGTATACCAATCTAGTCATTTAGCAAAATAACAAGAGATAACAAAGCACTCTTCACTCACTCTTTGGTGGATTGTTGGTTGGATTGTTGGTTATCATTTAGAGAGTCCAAGAAAGCATATAGATTTTATCACAAAAAGCAGTGAGTTATGGTAAAATCACACACAAACAAATCTATCCCACAAACAGAGAACAAAGAGAAAAGATAGAGTGTGGTAAGTGGTAACCACTCACTAAAGATTGGGCCTTTCTATCCTTTTTTTTGCGCCTAAGGAACCCTCCTCCACCCACCACATACCACCAACCCCATCATTTTTCAATTTTTTTGTCGATAATTATGATAAATATAAATAAAATAATTATTTATATGTTTACACATATAAAGACGATTTCTTTATTCTTGTCCAGATTAATTGGGTAACACCCACTTCATTTTTTCAGATTCTCTCAAAGCTGAACAGCCAAGGAGTCTGCTTTCTGGAGGTAAACTTTTGTCTGATGCATTTTATCGAACACCTTGTGATCAACTTTTTATCTCCATTTTTGCTGAAAGTGAGATCTAGATTAGTTTTCTTGCTTCATGGGTTTTTGTTGTTGTTTGGCCTTACTTTCCATGCCAATGTCACCCATTGTCCTTGATAAGTGTGCATAATTTATGCAAAAAGTATTGAACTGTGTTGGGCTTTTTGCAATTTTCTTTTTATTGTTGTATTGATATGATGTAATAGTTTATTGATATGATGCAAGAAAAGTAATCGATAATCTATTTACATTTTGCAATGTGTGATTGTTAATTCTTGTATTCTCTCACTCATTTGAATCTTTTGGGATGTGGGAAATGAGGTAGGATAATATTTAAAGTTTTAGATGCTTAGTTAGTTAGTTGGTTCCATGGATTTCTAAACACCAGAACATATTGTGGTTTAATCTTCAGTCTAATCATAGAATTTGTATGTTTTCTGAATGAACTTGTGCTAGGGAGTGTAATTAGTGGATACCTATTAGCTTAATTGGTTAGTTCGTTAAAGGTTGGGGTGTTATCCAAGACCTTGGATCGAATCCCGTCTAAATCACCATTCTTTGTGACTTTCCATGCTATGAAAGTATTTTGGTAGATTCAAAGTGTCTTCCAAATTTCAGCAATCAAGCATTGGTGTAGAAACTTTAATTACGGTTTAAACAATTTTATTGGGAAGATTTCTTCTTCATGTGGAAAGGATCATGTAATAGTTTCCAGGAGACTAGTTGCTTGGAATACTTTCATAATGGATTTTGATGACTGA

mRNA sequence

ATGGACTATGGACTATGGACTATGGACTATGGACTCTTGGAGTATAAGGATTCAGATATTGTACAAGTGCAACATGTGAAGGGATGTGGAAGTATTAATTGGGTAACACCCACTTCATTTTTTCAGATTCTCTCAAAGCTGAACAGCCAAGGAGTCTGCTTTCTGGAGATTCAAAGTGTCTTCCAAATTTCAGCAATCAAGCATTGGTGTAGAAACTTTAATTACGGTTTAAACAATTTTATTGGGAAGATTTCTTCTTCATGTGGAAAGGATCATGTAATAGTTTCCAGGAGACTAGTTGCTTGGAATACTTTCATAATGGATTTTGATGACTGA

Coding sequence (CDS)

ATGGACTATGGACTATGGACTATGGACTATGGACTCTTGGAGTATAAGGATTCAGATATTGTACAAGTGCAACATGTGAAGGGATGTGGAAGTATTAATTGGGTAACACCCACTTCATTTTTTCAGATTCTCTCAAAGCTGAACAGCCAAGGAGTCTGCTTTCTGGAGATTCAAAGTGTCTTCCAAATTTCAGCAATCAAGCATTGGTGTAGAAACTTTAATTACGGTTTAAACAATTTTATTGGGAAGATTTCTTCTTCATGTGGAAAGGATCATGTAATAGTTTCCAGGAGACTAGTTGCTTGGAATACTTTCATAATGGATTTTGATGACTGA

Protein sequence

MDYGLWTMDYGLLEYKDSDIVQVQHVKGCGSINWVTPTSFFQILSKLNSQGVCFLEIQSVFQISAIKHWCRNFNYGLNNFIGKISSSCGKDHVIVSRRLVAWNTFIMDFDD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo27062.1Spo27062.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo27062.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27062.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27062.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27062.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
biological_process GO:0003333 amino acid transmembrane transport
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0009396 folic acid-containing compound biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0005997 xylulose metabolic process
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0035999 tetrahydrofolate interconversion
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0015031 protein transport
biological_process GO:0009657 plastid organization
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0009853 photorespiration
biological_process GO:0006547 histidine metabolic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0052889 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
biological_process GO:0042274 ribosomal small subunit biogenesis
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006457 protein folding
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006427 histidyl-tRNA aminoacylation
biological_process GO:0006364 rRNA processing
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006508 proteolysis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 plastid transcription
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009902 chloroplast relocation
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0016310 phosphorylation
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009058 biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006007 glucose catabolic process
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0009407 toxin catabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0016120 carotene biosynthetic process
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030686 90S preribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009509 chromoplast
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0005634 nucleus
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009538 photosystem I reaction center
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009507 chloroplast
cellular_component GO:0019031 viral envelope
molecular_function GO:0046872 metal ion binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0070330 aromatase activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0015171 amino acid transmembrane transporter activity
molecular_function GO:0016719 carotene 7,8-desaturase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0004821 histidine-tRNA ligase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016301 kinase activity
molecular_function GO:0052886 9,9'-dicis-carotene:quinone oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0045435 lycopene epsilon cyclase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0004856 xylulokinase activity
molecular_function GO:0004477 methenyltetrahydrofolate cyclohydrolase activity
molecular_function GO:0052887 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
molecular_function GO:0005524 ATP binding
RNA-Seq Expression