Spo27064 (gene)

Overview
NameSpo27064
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02326 : 56590 .. 56946 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGCAAGTTTGTTGTTATGTTAGTGGTCATGGGTGCCCTTATTTGCACCACCGTCGTCGATGCTAGGAAGCTCGGCGGTGGACTTGATGAGGAGAAAACCTTCCTACCGTCTGGTGGGAGTGGTGCGGCTGGTGGAGTTGGGGTAATCGGGGGAGGTGGTCTTGGTTTAGGTGTAGGTCTTGGTAATGCTGGACTCGGCGTTGGTAGTTTGTTTGGAGGTGGTCTTGGTGGTGGTGCTGGTGGTCTTGGTGGTGGTGTAGGAGGTCTTGGTGGTCTTGGTGGTGGTACTGGTGGTCTTGGTGGAAGTCCTGGCGGTCTTGGTGGTGGGTTTGGAAGTGGAGGCATTCCCTAG

mRNA sequence

ATGGCTAGCAAGTTTGTTGTTATGTTAGTGGTCATGGGTGCCCTTATTTGCACCACCGTCGTCGATGCTAGGAAGCTCGGCGGTGGACTTGATGAGGAGAAAACCTTCCTACCGTCTGGTGGGAGTGGTGCGGCTGGTGGAGTTGGGGTAATCGGGGGAGGTGGTCTTGGTTTAGGTGTAGGTCTTGGTAATGCTGGACTCGGCGTTGGTAGTTTGTTTGGAGGTGGTCTTGGTGGTGGTGCTGGTGGTCTTGGTGGTGGTGTAGGAGGTCTTGGTGGTCTTGGTGGTGGTACTGGTGGTCTTGGTGGAAGTCCTGGCGGTCTTGGTGGTGGGTTTGGAAGTGGAGGCATTCCCTAG

Coding sequence (CDS)

ATGGCTAGCAAGTTTGTTGTTATGTTAGTGGTCATGGGTGCCCTTATTTGCACCACCGTCGTCGATGCTAGGAAGCTCGGCGGTGGACTTGATGAGGAGAAAACCTTCCTACCGTCTGGTGGGAGTGGTGCGGCTGGTGGAGTTGGGGTAATCGGGGGAGGTGGTCTTGGTTTAGGTGTAGGTCTTGGTAATGCTGGACTCGGCGTTGGTAGTTTGTTTGGAGGTGGTCTTGGTGGTGGTGCTGGTGGTCTTGGTGGTGGTGTAGGAGGTCTTGGTGGTCTTGGTGGTGGTACTGGTGGTCTTGGTGGAAGTCCTGGCGGTCTTGGTGGTGGGTTTGGAAGTGGAGGCATTCCCTAG

Protein sequence

MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo27064.1Spo27064.1mRNA


Homology
[Close]
BLAST of Spo27064.1 vs. NCBI nr
Match: gi|902116728|gb|KNA03914.1| (hypothetical protein SOVF_204120 [Spinacia oleracea])

HSP 1 Score: 179.5 bits (454), Expect = 3.500e-42
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60
           MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV
Sbjct: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60

Query: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 119
           GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP
Sbjct: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 118
[Close]
BLAST of Spo27064.1 vs. NCBI nr
Match: gi|731351132|ref|XP_010686879.1| (PREDICTED: acanthoscurrin-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 2.900e-12
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 

		  

Query: 12  MGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGNAGLGVGS 71
           MGAL+CTT++DARKL GG+DE+K+ LPSG    AGG+G+  GGGLGLG+GLG+ GLG+GS
Sbjct: 1   MGALLCTTIIDARKLVGGVDEQKSILPSGPLLPAGGLGIGTGGGLGLGLGLGHVGLGLGS 60

Query: 72  LFGG--GLGGGA-GGLGGGVGGLGGL-GGGTGGLGGSPGGLGGGFGSGGIP 119
            FGG  GLGGGA GG GGG GG GGL GGG  G GG  GG GGG GSG IP
Sbjct: 61  GFGGGVGLGGGAGGGGGGGFGGGGGLGGGGLAGGGGFGGGAGGGLGSGIIP 111
[Close]
BLAST of Spo27064.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9I2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_204120 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.400e-42
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60
           MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV
Sbjct: 1   MASKFVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGV 60

Query: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 119
           GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP
Sbjct: 61  GLGNAGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGGGTGGLGGSPGGLGGGFGSGGIP 118
[Close]
BLAST of Spo27064.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BSK1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185920 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.000e-12
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1 

		  

Query: 12  MGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGNAGLGVGS 71
           MGAL+CTT++DARKL GG+DE+K+ LPSG    AGG+G+  GGGLGLG+GLG+ GLG+GS
Sbjct: 1   MGALLCTTIIDARKLVGGVDEQKSILPSGPLLPAGGLGIGTGGGLGLGLGLGHVGLGLGS 60

Query: 72  LFGG--GLGGGA-GGLGGGVGGLGGL-GGGTGGLGGSPGGLGGGFGSGGIP 119
            FGG  GLGGGA GG GGG GG GGL GGG  G GG  GG GGG GSG IP
Sbjct: 61  GFGGGVGLGGGAGGGGGGGFGGGGGLGGGGLAGGGGFGGGAGGGLGSGIIP 111
[Close]
BLAST of Spo27064.1 vs. TAIR (Arabidopsis)
Match: AT4G29020.1 (glycine-rich protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.400e-6
Identity = 62/128 (48.44%), Postives = 73/128 (57.03%), Query Frame = 1 

		  

Query: 5   FVVMLVVMGALICTTVVDARKLGGGLDEEKTFLPSGGSGAAGGVGVIGGGGLGLGVGLGN 64
           F+V L+V  A+  T     + +G GLD++K F+   G G A G+G  GG G GLG   G 
Sbjct: 9   FLVALMVSQAVTATRPAPTKNVGAGLDDQKNFVAFAGVGGAAGIGGAGGVGAGLGGVAGG 68

Query: 65  AGLGVGSLFGGGLGGGAGGLGGGVGGLGGLGG---------GTGGLGGSP------GGLG 118
            G   G L  GG+GGG GGLGGGVGGLGGLGG         G GG+GG P      GGLG
Sbjct: 69  VGGVAGVLPVGGVGGGIGGLGGGVGGLGGLGGLGGGSGLGHGVGGIGGDPGIGSGIGGLG 128
The following BLAST results are available for this feature:
BLAST of Spo27064.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902116728|gb|KNA03914.1|3.5e-42100.hypothetical protein SOVF_2041... [more]
gi|731351132|ref|XP_010686879.1|2.9e-1267.5PREDICTED: acanthoscurrin-1 [B... [more]
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BLAST of Spo27064.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9Q9I2_SPIOL2.4e-42100.Uncharacterized protein OS=Spi... [more]
A0A0J8BSK1_BETVU2.0e-1267.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo27064.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27064.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G29020.19.4e-648.4glycine-rich protein[more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046656 folic acid biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0010431 seed maturation
biological_process GO:0016310 phosphorylation
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0015976 carbon utilization
biological_process GO:0042176 regulation of protein catabolic process
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0009249 protein lipoylation
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0097502 mannosylation
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006546 glycine catabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0007165 signal transduction
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0009058 biosynthetic process
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0055085 transmembrane transport
biological_process GO:0009733 response to auxin
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0006397 mRNA processing
biological_process GO:0001510 RNA methylation
biological_process GO:0006833 water transport
biological_process GO:0048767 root hair elongation
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0009651 response to salt stress
biological_process GO:0046686 response to cadmium ion
biological_process GO:0046827 positive regulation of protein export from nucleus
biological_process GO:0007033 vacuole organization
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0019048 modulation by virus of host morphology or physiology
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0009729 detection of brassinosteroid stimulus
biological_process GO:0009742 brassinosteroid mediated signaling pathway
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0000186 activation of MAPKK activity
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0008643 carbohydrate transport
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0006396 RNA processing
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0044070 regulation of anion transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0009790 embryo development
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0051301 cell division
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0016049 cell growth
biological_process GO:0030243 cellulose metabolic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006897 endocytosis
biological_process GO:0006412 translation
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006508 proteolysis
biological_process GO:0080167 response to karrikin
biological_process GO:0006730 one-carbon metabolic process
cellular_component GO:0035145 exon-exon junction complex
cellular_component GO:0005634 nucleus
cellular_component GO:0000136 alpha-1,6-mannosyltransferase complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0016604 nuclear body
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005829 cytosol
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
cellular_component GO:0030132 clathrin coat of coated pit
cellular_component GO:0009507 chloroplast
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0009524 phragmoplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0000785 chromatin
cellular_component GO:0000502 proteasome complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0005576 extracellular region
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005622 intracellular
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005768 endosome
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005730 nucleolus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
molecular_function GO:0003682 chromatin binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003950 NAD+ ADP-ribosyltransferase activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004326 tetrahydrofolylpolyglutamate synthase activity
molecular_function GO:0050321 tau-protein kinase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0033164 glycolipid 6-alpha-mannosyltransferase activity
molecular_function GO:0004709 MAP kinase kinase kinase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0030955 potassium ion binding
molecular_function GO:0004743 pyruvate kinase activity
molecular_function GO:0004378 GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004784 superoxide dismutase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo196560.81Barchart | Table
Spo060300.79Barchart | Table
Spo066810.76Barchart | Table
Spo148490.75Barchart | Table
Spo013570.74Barchart | Table
Spo147770.73Barchart | Table
Spo282890.73Barchart | Table
Spo036080.73Barchart | Table
Spo156030.73Barchart | Table
Spo135790.72Barchart | Table
Spo058460.71Barchart | Table
Spo094550.71Barchart | Table
Spo139530.70Barchart | Table
Spo085460.70Barchart | Table
Spo098190.70Barchart | Table
Spo046470.70Barchart | Table
Spo054870.69Barchart | Table
Spo196350.69Barchart | Table
Spo012040.69Barchart | Table
Spo095840.69Barchart | Table
Spo215950.68Barchart | Table
Spo026530.68Barchart | Table
Spo032570.68Barchart | Table
Spo054550.68Barchart | Table
Spo055570.68Barchart | Table
Spo141940.68Barchart | Table
Spo148710.68Barchart | Table
Spo161390.68Barchart | Table
Spo165140.68Barchart | Table
Spo182690.68Barchart | Table
Spo243680.68Barchart | Table
Spo120060.67Barchart | Table
Spo072040.67Barchart | Table
Spo144410.67Barchart | Table
Spo151520.67Barchart | Table
Spo040850.67Barchart | Table
Spo245940.67Barchart | Table
Spo029840.67Barchart | Table
Spo197220.67Barchart | Table
Spo004680.67Barchart | Table
Spo121280.67Barchart | Table
Spo021070.66Barchart | Table
Spo153670.66Barchart | Table
Spo093890.66Barchart | Table
Spo160730.66Barchart | Table
Spo109470.66Barchart | Table
Spo123940.66Barchart | Table
Spo074260.66Barchart | Table
Spo109690.66Barchart | Table
Spo237940.66Barchart | Table
Spo064730.66Barchart | Table
Spo231920.66Barchart | Table
Spo087710.66Barchart | Table
Spo252890.66Barchart | Table
Spo184510.66Barchart | Table
Spo161270.65Barchart | Table
Spo022780.65Barchart | Table
Spo122650.65Barchart | Table
Spo182190.65Barchart | Table
Spo255560.65Barchart | Table
Spo112960.65Barchart | Table
Spo052250.65Barchart | Table