Spo27130 (gene) | SpinachBase

Overview


Name	Spo27130
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Non-specific lipid-transfer protein
Location	chr5 : 27984000 .. 27987876 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGGTTAGGGGGTGGGGGCAACCGACTGCGTCGGGGGAGGAGGGGAGGTTCACCGGCTGCGTCGGGGGAGGGGGGTGGTTCACCGGCTGCGTCGGGGGAGGGGGGGTGGCTCTTCAACTTTCTATTTTTAATTTCTCTAAATTGGTCGAAGGAGGAGGAAGGCAGACAAGCTTTTTTTCTTCTTTTAATTTAGTGACCGTTTTTTGGTCATTGATTATTTAATTTTTTTTTAACTTTTTTTTAAAGTTTAGCGACCGCTTTTTTGGTCGGACATATTATATAGGCGGTTATTAAAATTTTAAATTTATTTTGAAAATAGTCGGAATTTACCGACTGCTCATTAGTCGGAATGGAAGTTTATGCAGTCGATAAATTTACGACTGTTATGAAAGCGGTTGGTAAATTTTAAATTTACCAACCGCTCTACATTCGGTCGGTAAATTTAGCGACCGTTTCTGATTCGGTTGGTAAATTTATTTTTACTGACTACTTTCACGTCGGTCGGTAAAATCAGTTGGTAATCAAGCGCTTTCTTGTAGTGATAGATACATCCGGTGCGTAGTAAATGTAGGAAAAAAGAGCTGCTGAAACCAAGAATTTATGATTAATAGTCGTATAAGATGTTACCCGATTATATAACATATAGGAAAAAATAGTTGCGTCGTGGTATGAAGGCCACTGACTTAGAAGCAAATTTTGCCACTAACGGTACAGGCTCTCAAGTGACGAATGCCCCCCAAGGTTAACACAACTCTCCTTCAAATCCGTGTACCCGAACTTGAAAGGTGGAACTGCTCAAGAACTGCTCAGATCTCTAATAGGATTTTGGGTTTGTGTTTATGGTATATGTGCGTGTATCAGAAAAGACCAGAACTTTGATATGTATATACCGTATACAAAGAGGAATACATCAATTGATTAGAAGAGAGAGAATATTATTGGGACCCGCCAATATTGTAAACCTCCTAAGAATTCCAAGTTCCACGTAACTCTTGTCAATATGCTAATATCAAAATACAAAGAAGAAAATCATGATTCTTATCCTTAAATTAGTTAGGAAAGGCCTAATAAAAAGGGTGAAAGAGTTTTGTGGTTTACAAACTCGTTGACTTTGTATGATTTAAGGGGACAAGAATTAATTGGCATTCTTTCTTCACAAACAGTGAAGATCACTGCCTACCCGCGGCTCATGATACAAGCCACACTTTAGCTGTGGCATTAACTGACCATCATCAAAAATAGTACCAAGTATCTTAATTTTTGCATTACGACCAACAGTAAATATTATGGTACGCTTTCTCTACATACCCAAATAATTTGGATACATGTTATCTTTATAATTGCATTTCTTAACCCTTGAAAAGCCTTAAAACACTTAATATTTTAATGATGACACGATTTTCTTAAAATCTATGAAGTTCATGTGAAAGATAAAGACAGTCCTATTTTTAGCAATAATGGGCCGAGTGTGTTGAAGAAAAAGAAGATCACCCATCTTAAATGATAATATATTTACAAGCCCAAATGTGAATTTCTTTTTGTACAAAATGGGTCTTACTAAGGCTCGATTCTCTCCGCAGTATTACTTTGCTTAATTTATTTTTGATTAGCTTCATATTATGTTTTGTTGAAATTTACTTATTTTTTTGAACTCATATTGTTTTGTTGGTGTCGAACTTCAATTATTTTTATTAATTTAAGGTAGTGTTTGGATACATTATTTCATTTGAAATGATTCATCTCAAATGTGGAAATTCAAATACTGGAATTCAATTTCAAATTCTTTGTTTGTTAAAAACCAAGAATTTCAATCATTTCAAATTTCCAAATTTCCAAATTTCATTGAAATGATGGTATCCAAACAAAGAGGAATTTTAATTTTTAGAATTTTGATTGCATCAAATGTTTGACAGGTAAACAAATTATTTCATTAATGAAAAAGAATATTACATCCAAAAAATCATAAATAGTTGCATTCAATTGAATCTGACAATCCTAGATAATATAGTCCAAACAAATGAAACTGTGATAATTCAACAACAATTAAATATGTCAATTCTTGAAATTATTTGATTAATCAACATTGTATAACAGAAATCAAATTAACATGTTAATTAGAAATTTAGAACCATTAGAATTTGGGAAACACTAAACCCTAACTTTTCAAATTTCCAAATTTCATTGCCTAATCTTGCCATGGTGTCTGAAAATGATGGCGACAAAGGATGCGAATCGGTGGTGGTATAACAATCCGAGGACTTGCGACAAATCCCCAAAATAATAAAACCTAATTCGACGAAGACGTCGATCTGTCTATGGCAGAAGAGGGAGAAATCCATATGGTTCAAGAGCTTGAAAGATTATTACACGCGAATCGGAAAGCCATGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGGACTGGAAAATCAACACTTGTTGCAGCCATGGCTAATCTTCTCGACTACGACATCTACTATATTGAATTAACAAGGAGTTAAAAAAGGTTGTTGATTGACAAAAAGATGTCGAAGAACATTAACATTGATGAGAGTAAGTTGATCGCGAACCTCTTCATCTTCAATAGCGTCCATTCGTTAATGGAGCTTGGAGAGTTTGGGGGAGTAGAGGAGAGAGAAAGGGGAGAGAAAGAGCGGTTGTCTTTCTTGGATTTCAAATGACAGCAATTGTAAATGGATTTCAAATGACAGCATGTTGGGCTTAATTTGCATAGGGTTGGATTTGGACCAAATCCAAATCCAAATCGTTTTAATTCCCAAACAATGTATTTGGGCCAATTCCATCATTTCAAATGAAATGATGGTATCCAAACAGGCCATAAGTAACTTTACGAAATATTTACTTTGTGGTGATTAAAACAATCCCTAAATTACACTTTTTTCGAAGATGATTACTAAGTATATTAAATTGTAATTTCATAACCCTCAACTCCTAAAGGTTATAATGAATGTTTAGTACGGAGTACATAATATGATAATATCACATTTCTACCATTTCTCCATTAGCTTCTTGTCTACGACCCCCCGAGGCTAGAGATACGTTTATCAATTTCCTTTCTAGAGCACGTTGTTAGACAAACATTAAATTTTTAGATGATGAGAACATGTACACAGATCCCAAGGCCACCCACAACAACAATTGGGAGAGGACTGTAACCTCTCCACTCACAACTCGCCCCGAATCCGGATTAGCCCTAAGGATGAACCGTGTGTTAACACCAAAAAAAAAGATCACAAGGTCGGCCCGACTGAACTTATGAATGAAATGCAGACATGTACGTATGCCTAGGATACAAGTGTACAACCTCACTTTTTAAGAGGCTTTGATGAGTTGATGTATACCGTTTAACCAAGAAGGTGAGTCATCATACTACAATCACTAAGGTAGCATTAAATAATCTCCAACTATCAACTAACAACTAACAAGTAATTAACAACCCACACCCAATCCAAGAAAAGAATCAATTTTAAGCTCCCTATAAATAGAAGCAACAATGAAACTCCTGAACCATATATCAACTGCCAATTAATTCAAGAGAGCATTATATCCTTTAACACAGCCACATTCTCTTAGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

mRNA sequence

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

Coding sequence (CDS)

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

Protein sequence

MWFTGSRERVTAALEVGAGGAGVPCAAGLGGRAIWPSRGTNIMDSSAVVVKLGCALLIMCMLMHVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo27130.1	Spo27130.1	mRNA

Homology

[Close]

BLAST of Spo27130.1 vs. NCBI nr
Match: gi|731344615|ref|XP_010683515.1| (PREDICTED: non-specific lipid-transfer protein-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.6 bits (161), Expect = 2.600e-8
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1

		  
Query: 47 AVVVKLGCALLIMCMLM---HVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA 95
          A+++KL CA L MCML+   H EAAVTCGQVTSSL PC+GYL+G  SPSPA
Sbjct: 2  AILMKLACATL-MCMLVVAPHAEAAVTCGQVTSSLLPCLGYLQGGASPSPA 51

[Close]

BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Q8_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g157260 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-8
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1

		  
Query: 47 AVVVKLGCALLIMCMLM---HVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA 95
          A+++KL CA L MCML+   H EAAVTCGQVTSSL PC+GYL+G  SPSPA
Sbjct: 2  AILMKLACATL-MCMLVVAPHAEAAVTCGQVTSSLLPCLGYLQGGASPSPA 51

The following BLAST results are available for this feature:

BLAST of Spo27130.1 vs. NCBI nr
BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
BLAST of Spo27130.1 vs. ExPASy Swiss-Prot
BLAST of Spo27130.1 vs. TAIR (Arabidopsis)

BLAST of Spo27130.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|731344615\|ref\|XP_010683515.1\|	2.6e-8	68.6	PREDICTED: non-specific lipid-...	[more]

BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0J8C2Q8_BETVU	1.8e-8	68.6	Non-specific lipid-transfer pr...	[more]

BLAST of Spo27130.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo27130.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.110.10		coord: 69..92 score: 1.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0015843	methylammonium transport
biological_process	GO:0072488	ammonium transmembrane transport
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006574	valine catabolic process
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0046950	cellular ketone body metabolic process
biological_process	GO:0006811	ion transport
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0006656	phosphatidylcholine biosynthetic process
biological_process	GO:0031640	killing of cells of other organism
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0046685	response to arsenic-containing substance
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006002	fructose 6-phosphate metabolic process
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0032259	methylation
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0000272	polysaccharide catabolic process
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0030029	actin filament-based process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0006621	protein retention in ER lumen
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:1901642	nucleoside transmembrane transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0007165	signal transduction
biological_process	GO:0015031	protein transport
biological_process	GO:0019752	carboxylic acid metabolic process
biological_process	GO:0006580	ethanolamine metabolic process
biological_process	GO:0009611	response to wounding
biological_process	GO:0009805	coumarin biosynthetic process
biological_process	GO:0006810	transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005945	6-phosphofructokinase complex
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0005694	chromosome
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003872	6-phosphofructokinase activity
molecular_function	GO:0009540	zeaxanthin epoxidase [overall] activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0046923	ER retention sequence binding
molecular_function	GO:0038023	signaling receptor activity
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0010174	nucleoside transmembrane transporter activity, against a concentration gradient
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0052662	zeaxanthin epoxidase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0016161	beta-amylase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0015238	drug transmembrane transporter activity
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0004419	hydroxymethylglutaryl-CoA lyase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0052663	antheraxanthin epoxidase activity
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008519	ammonium transmembrane transporter activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0009916	alternative oxidase activity
molecular_function	GO:0016791	phosphatase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0004047	aminomethyltransferase activity
molecular_function	GO:0000234	phosphoethanolamine N-methyltransferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo22196	0.81	Barchart \| Table
Spo26473	0.81	Barchart \| Table
Spo12289	0.76	Barchart \| Table
Spo01697	0.76	Barchart \| Table
Spo01230	0.75	Barchart \| Table
Spo08309	0.74	Barchart \| Table
Spo20891	0.74	Barchart \| Table
Spo25800	0.73	Barchart \| Table
Spo02238	0.73	Barchart \| Table
Spo12240	0.73	Barchart \| Table
Spo15031	0.73	Barchart \| Table
Spo23078	0.72	Barchart \| Table
Spo14473	0.72	Barchart \| Table
Spo15707	0.72	Barchart \| Table
Spo04790	0.72	Barchart \| Table
Spo21617	0.72	Barchart \| Table
Spo30001	0.71	Barchart \| Table
Spo04392	0.71	Barchart \| Table
Spo05583	0.71	Barchart \| Table
Spo07195	0.71	Barchart \| Table
Spo10738	0.71	Barchart \| Table
Spo11505	0.71	Barchart \| Table
Spo16015	0.71	Barchart \| Table
Spo19946	0.71	Barchart \| Table
Spo04391	0.70	Barchart \| Table
Spo15691	0.70	Barchart \| Table
Spo28082	0.70	Barchart \| Table
Spo18272	0.70	Barchart \| Table
Spo17203	0.70	Barchart \| Table
Spo09934	0.70	Barchart \| Table
Spo03551	0.70	Barchart \| Table
Spo17421	0.69	Barchart \| Table
Spo25689	0.69	Barchart \| Table
Spo13090	0.69	Barchart \| Table
Spo23404	0.69	Barchart \| Table
Spo14948	0.69	Barchart \| Table
Spo21749	0.68	Barchart \| Table
Spo20801	0.68	Barchart \| Table
Spo26520	0.68	Barchart \| Table
Spo06012	0.68	Barchart \| Table
Spo09821	0.68	Barchart \| Table
Spo05898	0.68	Barchart \| Table
Spo11397	0.67	Barchart \| Table
Spo11399	0.67	Barchart \| Table
Spo11941	0.67	Barchart \| Table
Spo09215	0.67	Barchart \| Table
Spo16056	0.67	Barchart \| Table
Spo00194	0.67	Barchart \| Table
Spo21194	0.67	Barchart \| Table
Spo24392	0.67	Barchart \| Table
Spo24490	0.67	Barchart \| Table
Spo24677	0.67	Barchart \| Table
Spo01721	0.67	Barchart \| Table
Spo11201	0.67	Barchart \| Table
Spo06841	0.66	Barchart \| Table
Spo13643	0.66	Barchart \| Table
Spo17865	0.66	Barchart \| Table
Spo02279	0.66	Barchart \| Table
Spo16316	0.66	Barchart \| Table
Spo25953	0.66	Barchart \| Table
Spo05511	0.66	Barchart \| Table
Spo16091	0.66	Barchart \| Table
Spo07292	0.65	Barchart \| Table
Spo17134	0.65	Barchart \| Table
Spo26224	0.65	Barchart \| Table
Spo12889	0.65	Barchart \| Table
Spo11152	0.65	Barchart \| Table
Spo25493	0.65	Barchart \| Table
Spo12890	0.65	Barchart \| Table