Spo27130 (gene)

Overview
NameSpo27130
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNon-specific lipid-transfer protein
Locationchr5 : 27984000 .. 27987876 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGGTTAGGGGGTGGGGGCAACCGACTGCGTCGGGGGAGGAGGGGAGGTTCACCGGCTGCGTCGGGGGAGGGGGGTGGTTCACCGGCTGCGTCGGGGGAGGGGGGGTGGCTCTTCAACTTTCTATTTTTAATTTCTCTAAATTGGTCGAAGGAGGAGGAAGGCAGACAAGCTTTTTTTCTTCTTTTAATTTAGTGACCGTTTTTTGGTCATTGATTATTTAATTTTTTTTTAACTTTTTTTTAAAGTTTAGCGACCGCTTTTTTGGTCGGACATATTATATAGGCGGTTATTAAAATTTTAAATTTATTTTGAAAATAGTCGGAATTTACCGACTGCTCATTAGTCGGAATGGAAGTTTATGCAGTCGATAAATTTACGACTGTTATGAAAGCGGTTGGTAAATTTTAAATTTACCAACCGCTCTACATTCGGTCGGTAAATTTAGCGACCGTTTCTGATTCGGTTGGTAAATTTATTTTTACTGACTACTTTCACGTCGGTCGGTAAAATCAGTTGGTAATCAAGCGCTTTCTTGTAGTGATAGATACATCCGGTGCGTAGTAAATGTAGGAAAAAAGAGCTGCTGAAACCAAGAATTTATGATTAATAGTCGTATAAGATGTTACCCGATTATATAACATATAGGAAAAAATAGTTGCGTCGTGGTATGAAGGCCACTGACTTAGAAGCAAATTTTGCCACTAACGGTACAGGCTCTCAAGTGACGAATGCCCCCCAAGGTTAACACAACTCTCCTTCAAATCCGTGTACCCGAACTTGAAAGGTGGAACTGCTCAAGAACTGCTCAGATCTCTAATAGGATTTTGGGTTTGTGTTTATGGTATATGTGCGTGTATCAGAAAAGACCAGAACTTTGATATGTATATACCGTATACAAAGAGGAATACATCAATTGATTAGAAGAGAGAGAATATTATTGGGACCCGCCAATATTGTAAACCTCCTAAGAATTCCAAGTTCCACGTAACTCTTGTCAATATGCTAATATCAAAATACAAAGAAGAAAATCATGATTCTTATCCTTAAATTAGTTAGGAAAGGCCTAATAAAAAGGGTGAAAGAGTTTTGTGGTTTACAAACTCGTTGACTTTGTATGATTTAAGGGGACAAGAATTAATTGGCATTCTTTCTTCACAAACAGTGAAGATCACTGCCTACCCGCGGCTCATGATACAAGCCACACTTTAGCTGTGGCATTAACTGACCATCATCAAAAATAGTACCAAGTATCTTAATTTTTGCATTACGACCAACAGTAAATATTATGGTACGCTTTCTCTACATACCCAAATAATTTGGATACATGTTATCTTTATAATTGCATTTCTTAACCCTTGAAAAGCCTTAAAACACTTAATATTTTAATGATGACACGATTTTCTTAAAATCTATGAAGTTCATGTGAAAGATAAAGACAGTCCTATTTTTAGCAATAATGGGCCGAGTGTGTTGAAGAAAAAGAAGATCACCCATCTTAAATGATAATATATTTACAAGCCCAAATGTGAATTTCTTTTTGTACAAAATGGGTCTTACTAAGGCTCGATTCTCTCCGCAGTATTACTTTGCTTAATTTATTTTTGATTAGCTTCATATTATGTTTTGTTGAAATTTACTTATTTTTTTGAACTCATATTGTTTTGTTGGTGTCGAACTTCAATTATTTTTATTAATTTAAGGTAGTGTTTGGATACATTATTTCATTTGAAATGATTCATCTCAAATGTGGAAATTCAAATACTGGAATTCAATTTCAAATTCTTTGTTTGTTAAAAACCAAGAATTTCAATCATTTCAAATTTCCAAATTTCCAAATTTCATTGAAATGATGGTATCCAAACAAAGAGGAATTTTAATTTTTAGAATTTTGATTGCATCAAATGTTTGACAGGTAAACAAATTATTTCATTAATGAAAAAGAATATTACATCCAAAAAATCATAAATAGTTGCATTCAATTGAATCTGACAATCCTAGATAATATAGTCCAAACAAATGAAACTGTGATAATTCAACAACAATTAAATATGTCAATTCTTGAAATTATTTGATTAATCAACATTGTATAACAGAAATCAAATTAACATGTTAATTAGAAATTTAGAACCATTAGAATTTGGGAAACACTAAACCCTAACTTTTCAAATTTCCAAATTTCATTGCCTAATCTTGCCATGGTGTCTGAAAATGATGGCGACAAAGGATGCGAATCGGTGGTGGTATAACAATCCGAGGACTTGCGACAAATCCCCAAAATAATAAAACCTAATTCGACGAAGACGTCGATCTGTCTATGGCAGAAGAGGGAGAAATCCATATGGTTCAAGAGCTTGAAAGATTATTACACGCGAATCGGAAAGCCATGGAAGCGTGGTTATCTTCTTTATGGTCCTCCAGGGACTGGAAAATCAACACTTGTTGCAGCCATGGCTAATCTTCTCGACTACGACATCTACTATATTGAATTAACAAGGAGTTAAAAAAGGTTGTTGATTGACAAAAAGATGTCGAAGAACATTAACATTGATGAGAGTAAGTTGATCGCGAACCTCTTCATCTTCAATAGCGTCCATTCGTTAATGGAGCTTGGAGAGTTTGGGGGAGTAGAGGAGAGAGAAAGGGGAGAGAAAGAGCGGTTGTCTTTCTTGGATTTCAAATGACAGCAATTGTAAATGGATTTCAAATGACAGCATGTTGGGCTTAATTTGCATAGGGTTGGATTTGGACCAAATCCAAATCCAAATCGTTTTAATTCCCAAACAATGTATTTGGGCCAATTCCATCATTTCAAATGAAATGATGGTATCCAAACAGGCCATAAGTAACTTTACGAAATATTTACTTTGTGGTGATTAAAACAATCCCTAAATTACACTTTTTTCGAAGATGATTACTAAGTATATTAAATTGTAATTTCATAACCCTCAACTCCTAAAGGTTATAATGAATGTTTAGTACGGAGTACATAATATGATAATATCACATTTCTACCATTTCTCCATTAGCTTCTTGTCTACGACCCCCCGAGGCTAGAGATACGTTTATCAATTTCCTTTCTAGAGCACGTTGTTAGACAAACATTAAATTTTTAGATGATGAGAACATGTACACAGATCCCAAGGCCACCCACAACAACAATTGGGAGAGGACTGTAACCTCTCCACTCACAACTCGCCCCGAATCCGGATTAGCCCTAAGGATGAACCGTGTGTTAACACCAAAAAAAAAGATCACAAGGTCGGCCCGACTGAACTTATGAATGAAATGCAGACATGTACGTATGCCTAGGATACAAGTGTACAACCTCACTTTTTAAGAGGCTTTGATGAGTTGATGTATACCGTTTAACCAAGAAGGTGAGTCATCATACTACAATCACTAAGGTAGCATTAAATAATCTCCAACTATCAACTAACAACTAACAAGTAATTAACAACCCACACCCAATCCAAGAAAAGAATCAATTTTAAGCTCCCTATAAATAGAAGCAACAATGAAACTCCTGAACCATATATCAACTGCCAATTAATTCAAGAGAGCATTATATCCTTTAACACAGCCACATTCTCTTAGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

mRNA sequence

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

Coding sequence (CDS)

ATGTGGTTCACCGGCTCGCGAGAAAGAGTAACAGCGGCGCTGGAGGTTGGGGCTGGCGGCGCTGGGGTACCGTGCGCGGCTGGGCTGGGTGGTCGTGCAATCTGGCCGAGTCGGGGGACCAATATAATGGATAGCTCTGCTGTTGTTGTTAAGTTAGGTTGTGCACTCTTGATCATGTGCATGTTGATGCATGTTGAGGCTGCTGTAACTTGTGGACAGGTTACCAGTAGCCTAGCACCATGCATAGGATACCTTGAGGGAAACGGAAGTCCATCCCCGGCTTAA

Protein sequence

MWFTGSRERVTAALEVGAGGAGVPCAAGLGGRAIWPSRGTNIMDSSAVVVKLGCALLIMCMLMHVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo27130.1Spo27130.1mRNA


Homology
[Close]
BLAST of Spo27130.1 vs. NCBI nr
Match: gi|731344615|ref|XP_010683515.1| (PREDICTED: non-specific lipid-transfer protein-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.6 bits (161), Expect = 2.600e-8
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 

		  

Query: 47 AVVVKLGCALLIMCMLM---HVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA 95
          A+++KL CA L MCML+   H EAAVTCGQVTSSL PC+GYL+G  SPSPA
Sbjct: 2  AILMKLACATL-MCMLVVAPHAEAAVTCGQVTSSLLPCLGYLQGGASPSPA 51
[Close]
BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2Q8_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g157260 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.800e-8
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 

		  

Query: 47 AVVVKLGCALLIMCMLM---HVEAAVTCGQVTSSLAPCIGYLEGNGSPSPA 95
          A+++KL CA L MCML+   H EAAVTCGQVTSSL PC+GYL+G  SPSPA
Sbjct: 2  AILMKLACATL-MCMLVVAPHAEAAVTCGQVTSSLLPCLGYLQGGASPSPA 51
The following BLAST results are available for this feature:
BLAST of Spo27130.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|731344615|ref|XP_010683515.1|2.6e-868.6PREDICTED: non-specific lipid-... [more]
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BLAST of Spo27130.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0J8C2Q8_BETVU1.8e-868.6Non-specific lipid-transfer pr... [more]
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BLAST of Spo27130.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27130.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.110.10coord: 69..92
score: 1.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0015843 methylammonium transport
biological_process GO:0072488 ammonium transmembrane transport
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006520 cellular amino acid metabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006574 valine catabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0046950 cellular ketone body metabolic process
biological_process GO:0006811 ion transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0006013 mannose metabolic process
biological_process GO:0006656 phosphatidylcholine biosynthetic process
biological_process GO:0031640 killing of cells of other organism
biological_process GO:0050832 defense response to fungus
biological_process GO:0006468 protein phosphorylation
biological_process GO:0046685 response to arsenic-containing substance
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006012 galactose metabolic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006002 fructose 6-phosphate metabolic process
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0006566 threonine metabolic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0032259 methylation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0000272 polysaccharide catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0030029 actin filament-based process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006621 protein retention in ER lumen
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:1901642 nucleoside transmembrane transport
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0007165 signal transduction
biological_process GO:0015031 protein transport
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0006580 ethanolamine metabolic process
biological_process GO:0009611 response to wounding
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0006810 transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005739 mitochondrion
cellular_component GO:0000785 chromatin
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005622 intracellular
cellular_component GO:0005945 6-phosphofructokinase complex
cellular_component GO:0070469 respiratory chain
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005694 chromosome
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005576 extracellular region
molecular_function GO:0003872 6-phosphofructokinase activity
molecular_function GO:0009540 zeaxanthin epoxidase [overall] activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0046923 ER retention sequence binding
molecular_function GO:0038023 signaling receptor activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0016829 lyase activity
molecular_function GO:0010174 nucleoside transmembrane transporter activity, against a concentration gradient
molecular_function GO:0020037 heme binding
molecular_function GO:0016831 carboxy-lyase activity
molecular_function GO:0052662 zeaxanthin epoxidase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0016161 beta-amylase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0004419 hydroxymethylglutaryl-CoA lyase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0052663 antheraxanthin epoxidase activity
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0005524 ATP binding
molecular_function GO:0008519 ammonium transmembrane transporter activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0009916 alternative oxidase activity
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0004047 aminomethyltransferase activity
molecular_function GO:0000234 phosphoethanolamine N-methyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo221960.81Barchart | Table
Spo264730.81Barchart | Table
Spo122890.76Barchart | Table
Spo016970.76Barchart | Table
Spo012300.75Barchart | Table
Spo083090.74Barchart | Table
Spo208910.74Barchart | Table
Spo258000.73Barchart | Table
Spo022380.73Barchart | Table
Spo122400.73Barchart | Table
Spo150310.73Barchart | Table
Spo230780.72Barchart | Table
Spo144730.72Barchart | Table
Spo157070.72Barchart | Table
Spo047900.72Barchart | Table
Spo216170.72Barchart | Table
Spo300010.71Barchart | Table
Spo043920.71Barchart | Table
Spo055830.71Barchart | Table
Spo071950.71Barchart | Table
Spo107380.71Barchart | Table
Spo115050.71Barchart | Table
Spo160150.71Barchart | Table
Spo199460.71Barchart | Table
Spo043910.70Barchart | Table
Spo156910.70Barchart | Table
Spo280820.70Barchart | Table
Spo182720.70Barchart | Table
Spo172030.70Barchart | Table
Spo099340.70Barchart | Table
Spo035510.70Barchart | Table
Spo174210.69Barchart | Table
Spo256890.69Barchart | Table
Spo130900.69Barchart | Table
Spo234040.69Barchart | Table
Spo149480.69Barchart | Table
Spo217490.68Barchart | Table
Spo208010.68Barchart | Table
Spo265200.68Barchart | Table
Spo060120.68Barchart | Table
Spo098210.68Barchart | Table
Spo058980.68Barchart | Table
Spo113970.67Barchart | Table
Spo113990.67Barchart | Table
Spo119410.67Barchart | Table
Spo092150.67Barchart | Table
Spo160560.67Barchart | Table
Spo001940.67Barchart | Table
Spo211940.67Barchart | Table
Spo243920.67Barchart | Table
Spo244900.67Barchart | Table
Spo246770.67Barchart | Table
Spo017210.67Barchart | Table
Spo112010.67Barchart | Table
Spo068410.66Barchart | Table
Spo136430.66Barchart | Table
Spo178650.66Barchart | Table
Spo022790.66Barchart | Table
Spo163160.66Barchart | Table
Spo259530.66Barchart | Table
Spo055110.66Barchart | Table
Spo160910.66Barchart | Table
Spo072920.65Barchart | Table
Spo171340.65Barchart | Table
Spo262240.65Barchart | Table
Spo128890.65Barchart | Table
Spo111520.65Barchart | Table
Spo254930.65Barchart | Table
Spo128900.65Barchart | Table