Spo27163 (gene) | SpinachBase

Overview


Name	Spo27163
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L1
Location	chr1 : 10787609 .. 10790950 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCTCTCCCTCTTCTTATCTGCTTATATTTCTGGATAGCCAAAGTTCAGTTTCCTTTGAACTTCATCACTCTCTCTCTCTTCGGTGAGCAACAATGGCTACCGCTGCACCTCCATCTTTAAGCCTCTGCTACGCTTCTTCCTCCTTCCAATACCAGCAAGACCCCTCTTTTCAAACCCATTTTAAACCCCTTCTCCTTAATTCTTCTCTATGCCGTTTAACTCTTAATCAAAGGGAACGCAGTTGTCTGAAATGGGTTGATTTCACTTCTCAGAAACAATCACCCAAGTCTGTTTCTTTCCGTGTTTTGGCGGCTGTTGCTGCGGAAGCTGAGGTTGCGGACATGGAGGAGGAGGAAGGAGAGAGCGGCGGTGTTGCTACTTTACCTTCGCCTACTAAGCCTAAAAAGGGGAAAGCTGCTTTGCCTTTGAAGAGTGACAGGGTATCATTTTTTCTCTTTTCTTCCATTTTTTTAGTTTAATTTTGGGAATTATTTGCTTACTGATTAATTCCGATTCTGGGTTTCATTTAAATTTTGTTTGTGTATTATCAGAAATATATGTTTATTCATTGATGAATTGAATTATGATCACTGTTTTTCTGGGTGAAAACTGATAAATAAGCCCAATTCAAAACCGGGGTATAAAACCTTGTCTAAATTTGTTACAATTCTGCTTCCTTTGGTTAATATAAGATGAATTTACTGATTAGCCATGTATTATTACTTATTGTTGTGGTATAGGAGAGATTGTTAGTTTTTAAAGGGATGTTTAGCATGTTTTCCTTGGACCTTTTTTAGGGTTGGACTTCTATTATTAGTGTACTGATGCTTGTTTAATAAATTGTCAGACGAGGTCGAAGAGGTTCTTAGAGATTCAAAAGCTCAGAGAAATCAAGCAAGAATATGACTTGAAGACGGCGTTATCATTGATGAAGCAAATGTCGTCTACAAAGTTCGTAGAGACTGCAGAGGCCCATTTTCGCTTGAATATTGATCCCAAGTACAATGATCAACAGCTGAGAGCAACTGTATGTCTCCTCAATAACTACCTTTGCCCCTTTCCTGAGAACTTGCTTGTTTCTTCTTCATTTGTTTTTGGATTGATGTACGTAGCTTGAAAGTTTGGATGCTAAGAGTTAATATTATACAGGTGAGTTTGCCCAAGGGAACTGGAAAAACTGTTAAAATAGCCGTGCTTGCCCAAGGTATGGGTTCTAATGATTTTTTGGGATTCAATTGCTTAGTTGCTTGCCAAATTTGGAGTGAATTCTATACCGATATTACTTGATAAGGTCCTTTTGTTCGGATTCAATTGCTTAGTTGCTTTTCAAATGTAGAGTGCATTCTATACCGATATTACTTGATAAGGTCCTTGTAAAGATATGTTATCAACATATATAGGCATCAAAGGAAGTGTAAATATATGTGGATCAATTATAGATGATGTAACTAGGACCTATGAGATAATGATTATGATGTCCAGTAAAGTTGCACAAACAGATGTGTGGTAGAGTGAAGACTCAGATCAGATGTTAGGAGTTGTATTCAACTTTAGGCAATGCTTGCAGATTTGGTATGATTTTTGTTGTACCCAAAAAAATAAAGATCACTCAAAAAGTGAGGATTACACATCTGGGAAAAGAGACTGTAAGCCTTAGATATCAATTATATGTCTTAGCAAATAATGTCAGCATGTGAAACATTTGGAGAATGTTACCACAGAATTGCTGTAAATGGCAGTAGTTTTTATATTTTCATAATGAAGCTCTGAAGTCGCAAAATTGTCCAACTTCCTGATTGCATTTTGTGTGAGAATAATTGTTACATATCATGAAAAGACAAGTAATTAGAACTTCTGAATCCTCCTAGTCCTTTGCTCTGGCCAAGGCAAGAGCCCTGTTTAAGGCATCAGTATCCCTTCCCTCCATTTCTCTCCATTTCCTCGTATCCAGACAAAGTGCGAGTCCCCTGACATCCTCATCTGGGAAGTAAGAAGATAGTCTTGAGTTGGAAGGAGCATTTATTGATTTCATTTCTTTGTGTTTCTACTTATTTTGTTCTTGAGGATTGTATCTCATCCCAGAAGTGTAAAATGGCAGGCGACAAAATTGACGAAGCAAAAGCAGCAGGAGCAGATATAGTTGGTGGAGAAGAATTAATAGAACAAATAAAGGGGGGATTCATGGACTTTGATAAGTTGATTGCAACATCTGACATGATGGCTAAGGTGGTGTTTCTCTTCTGTTACTTTTATATGTGAAACTGTAAAGTATTCTAGAATACGGCTGCTGAATCCATCATGTGCTGTTTGCATAAGTCCTTATTGAATCTGATATCATGAATAACTTGAGTAGTCAAAACAGACTTCAGAGCTGTTTGACAAATATAGACTATTTGCCTCCAATCCAGTGTTCCTAAACTAATCATCTTGGTATTTGCCACAGGTTGCAAGTCTAGGAAGGATTCTGGGGCCACGAGGGCTCATGCCAACTCCAAAAGCTGGAACGGTCACACCAAATGTAGCTCAGGTAAAACAAATGTGTCCTATTAAAAGGAAATAGGTGTTATATTTTGGACTTGTTAAGTGTGACTGAAAGCTAAAATGTTGTGCTCTATGATATTCCAGGCTGTGGAGGAATTCAAGAAAGGCAAGGTCGAGTTTAGAGTTGATAAAACAGGAATTGTTCACATTCCCTTTGGAAAGTTGAACTTCGAGGAGGAGGATCTTCTTATAAACTTGTTTGCCACAATTGTATGTTCTTTGGTCCTTAAATCTATAAATTATTTCATGCACCTTTCTTCAAATAATTTTTAACCTTTAACACTATGTTTCAGAAATCAGTGGAGACCAACAAGCCAACCGGTGCTAAGGGGGTTTACTGGAAAAGTGCCCATATCAGCTCATCAATGGGACCTTCTATTCGGTTAAACATTAGGGAGATGCTTGATTATAAGCCTCCTTCAAATGCTTAGACAGCCTTGTGTAATCTTTGTTTGTCATTTTTTGAGGCACTTCGATAATTTCAGAAGCAGCATTTCAAGAACGAAGACTTCATATGTAGCAGATTTCTTCAGTGACGTGGATGTTCTTCACTAGCAGGCTGACAAGTTATTGTAATTTCAAAGTTGATACTTGTACAATAGCTGTATCTTAGTTTTGGATAGTGAATTGGAAATAGTATGATTGTGGCTCGTGTATAGCTTCATTGTGCAAGAGTTTTGCCACTGAGATTGAGAATATACAAGTAATATTTCAAAAATAAGAATTGCAATTTAGATGTTATACATACATGAATAAACTTCAACGTCAGATAAAAGACCAACGTCTAAAAATTTTCAAG

mRNA sequence

ACTCTCTCCCTCTTCTTATCTGCTTATATTTCTGGATAGCCAAAGTTCAGTTTCCTTTGAACTTCATCACTCTCTCTCTCTTCGGTGAGCAACAATGGCTACCGCTGCACCTCCATCTTTAAGCCTCTGCTACGCTTCTTCCTCCTTCCAATACCAGCAAGACCCCTCTTTTCAAACCCATTTTAAACCCCTTCTCCTTAATTCTTCTCTATGCCGTTTAACTCTTAATCAAAGGGAACGCAGTTGTCTGAAATGGGTTGATTTCACTTCTCAGAAACAATCACCCAAGTCTGTTTCTTTCCGTGTTTTGGCGGCTGTTGCTGCGGAAGCTGAGGTTGCGGACATGGAGGAGGAGGAAGGAGAGAGCGGCGGTGTTGCTACTTTACCTTCGCCTACTAAGCCTAAAAAGGGGAAAGCTGCTTTGCCTTTGAAGAGTGACAGGACGAGGTCGAAGAGGTTCTTAGAGATTCAAAAGCTCAGAGAAATCAAGCAAGAATATGACTTGAAGACGGCGTTATCATTGATGAAGCAAATGTCGTCTACAAAGTTCGTAGAGACTGCAGAGGCCCATTTTCGCTTGAATATTGATCCCAAGTACAATGATCAACAGCTGAGAGCAACTGTGAGTTTGCCCAAGGGAACTGGAAAAACTGTTAAAATAGCCGTGCTTGCCCAAGGCGACAAAATTGACGAAGCAAAAGCAGCAGGAGCAGATATAGTTGGTGGAGAAGAATTAATAGAACAAATAAAGGGGGGATTCATGGACTTTGATAAGTTGATTGCAACATCTGACATGATGGCTAAGGTTGCAAGTCTAGGAAGGATTCTGGGGCCACGAGGGCTCATGCCAACTCCAAAAGCTGGAACGGTCACACCAAATGTAGCTCAGGCTGTGGAGGAATTCAAGAAAGGCAAGGTCGAGTTTAGAGTTGATAAAACAGGAATTGTTCACATTCCCTTTGGAAAGTTGAACTTCGAGGAGGAGGATCTTCTTATAAACTTGTTTGCCACAATTAAATCAGTGGAGACCAACAAGCCAACCGGTGCTAAGGGGGTTTACTGGAAAAGTGCCCATATCAGCTCATCAATGGGACCTTCTATTCGGTTAAACATTAGGGAGATGCTTGATTATAAGCCTCCTTCAAATGCTTAGACAGCCTTGTGTAATCTTTGTTTGTCATTTTTTGAGGCACTTCGATAATTTCAGAAGCAGCATTTCAAGAACGAAGACTTCATATGTAGCAGATTTCTTCAGTGACGTGGATGTTCTTCACTAGCAGGCTGACAAGTTATTGTAATTTCAAAGTTGATACTTGTACAATAGCTGTATCTTAGTTTTGGATAGTGAATTGGAAATAGTATGATTGTGGCTCGTGTATAGCTTCATTGTGCAAGAGTTTTGCCACTGAGATTGAGAATATACAAGTAATATTTCAAAAATAAGAATTGCAATTTAGATGTTATACATACATGAATAAACTTCAACGTCAGATAAAAGACCAACGTCTAAAAATTTTCAAG

Coding sequence (CDS)

ATGGCTACCGCTGCACCTCCATCTTTAAGCCTCTGCTACGCTTCTTCCTCCTTCCAATACCAGCAAGACCCCTCTTTTCAAACCCATTTTAAACCCCTTCTCCTTAATTCTTCTCTATGCCGTTTAACTCTTAATCAAAGGGAACGCAGTTGTCTGAAATGGGTTGATTTCACTTCTCAGAAACAATCACCCAAGTCTGTTTCTTTCCGTGTTTTGGCGGCTGTTGCTGCGGAAGCTGAGGTTGCGGACATGGAGGAGGAGGAAGGAGAGAGCGGCGGTGTTGCTACTTTACCTTCGCCTACTAAGCCTAAAAAGGGGAAAGCTGCTTTGCCTTTGAAGAGTGACAGGACGAGGTCGAAGAGGTTCTTAGAGATTCAAAAGCTCAGAGAAATCAAGCAAGAATATGACTTGAAGACGGCGTTATCATTGATGAAGCAAATGTCGTCTACAAAGTTCGTAGAGACTGCAGAGGCCCATTTTCGCTTGAATATTGATCCCAAGTACAATGATCAACAGCTGAGAGCAACTGTGAGTTTGCCCAAGGGAACTGGAAAAACTGTTAAAATAGCCGTGCTTGCCCAAGGCGACAAAATTGACGAAGCAAAAGCAGCAGGAGCAGATATAGTTGGTGGAGAAGAATTAATAGAACAAATAAAGGGGGGATTCATGGACTTTGATAAGTTGATTGCAACATCTGACATGATGGCTAAGGTTGCAAGTCTAGGAAGGATTCTGGGGCCACGAGGGCTCATGCCAACTCCAAAAGCTGGAACGGTCACACCAAATGTAGCTCAGGCTGTGGAGGAATTCAAGAAAGGCAAGGTCGAGTTTAGAGTTGATAAAACAGGAATTGTTCACATTCCCTTTGGAAAGTTGAACTTCGAGGAGGAGGATCTTCTTATAAACTTGTTTGCCACAATTAAATCAGTGGAGACCAACAAGCCAACCGGTGCTAAGGGGGTTTACTGGAAAAGTGCCCATATCAGCTCATCAATGGGACCTTCTATTCGGTTAAACATTAGGGAGATGCTTGATTATAAGCCTCCTTCAAATGCTTAG

Protein sequence

MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo27163.1	Spo27163.1	mRNA

Homology

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BLAST of Spo27163.1 vs. NCBI nr
Match: gi|75311086|sp|Q9LE95.1|RK1_SPIOL (RecName: Full=50S ribosomal protein L1, chloroplastic; AltName: Full=CL1; Flags: Precursor)

HSP 1 Score: 678.3 bits (1749), Expect = 7.100e-192
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

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BLAST of Spo27163.1 vs. NCBI nr
Match: gi|902155062|gb|KNA05869.1| (hypothetical protein SOVF_186350 [Spinacia oleracea])

HSP 1 Score: 676.8 bits (1745), Expect = 2.100e-191
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF+EEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFKEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

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BLAST of Spo27163.1 vs. NCBI nr
Match: gi|731316270|ref|XP_010694860.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 570.9 bits (1470), Expect = 1.600e-159
Identity = 309/359 (86.07%), Postives = 321/359 (89.42%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSS-FQYQQD----PSFQTHFKPLLLNSSLCRLTLNQRERSCLKWV 60
           MA+ APPSL+L YASSS F YQQD    PSFQTH KP  LNSSL  LTLNQRER CLKWV
Sbjct: 1   MASIAPPSLTLSYASSSSFNYQQDLTFYPSFQTH-KPFFLNSSLYPLTLNQRERKCLKWV 60

Query: 61  DFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGG--VATLPSPTKPKKGKAALPLK 120
           D  SQKQ        V+AAVAAEAEVA+ EEEE ESGG  V TLP  TKPK GKAALPLK
Sbjct: 61  DVNSQKQPKFGSLHVVVAAVAAEAEVAETEEEERESGGGGVVTLPKSTKPKTGKAALPLK 120

Query: 121 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
            DRTRSKRFLEIQ+LREIKQEYDLKTA+SLMKQMS+TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQRLREIKQEYDLKTAISLMKQMSTTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSD 240
           RATVSLPKGTG  VKIAVLAQGDKIDEAKAAGADIVGGE+LIEQIKGGFMDFDKLIATSD
Sbjct: 181 RATVSLPKGTGTIVKIAVLAQGDKIDEAKAAGADIVGGEDLIEQIKGGFMDFDKLIATSD 240

Query: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300
           MMAKVASLGRILGPRGLMPTPKAGTVTPN+AQAVEEFKKGKVEFRVDKTGIVHIPFGKLN
Sbjct: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNIAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300

Query: 301 FEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           FEE+DLLINL AT+KSVE NKPTGAKGVYWKSAHISSSMGPSI+LNIREMLDYK PSNA
Sbjct: 301 FEEDDLLINLLATVKSVEANKPTGAKGVYWKSAHISSSMGPSIKLNIREMLDYKLPSNA 358

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BLAST of Spo27163.1 vs. NCBI nr
Match: gi|720044107|ref|XP_010269778.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 459.1 bits (1180), Expect = 6.700e-126
Identity = 243/352 (69.03%), Postives = 282/352 (80.11%), Query Frame = 1

		  
Query: 5   APPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS-----SLCRLTLNQRERSCLKWVDFTS 64
           A  S+ L +++++    + PS    FKP  ++S     S+  L L+ R R    WV  TS
Sbjct: 2   ASSSVMLTHSATTILPSEAPSLC--FKPNPISSCSSCFSVFPLVLHSRGRKSCNWVQVTS 61

Query: 65  QKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRS 124
            +++    S  V AA+AAEAEVA+   +E   G  A   SPTKPKKGKAALPLK DRTRS
Sbjct: 62  WREAKFESSIFVAAALAAEAEVAEDVTQEAVEGSAAAAASPTKPKKGKAALPLKRDRTRS 121

Query: 125 KRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSL 184
           KRFLEIQKLRE K+EYDL TA+SL+KQM+STKFVET E HFRLNIDPKYNDQQLRATV+L
Sbjct: 122 KRFLEIQKLRENKKEYDLPTAISLLKQMASTKFVETVEVHFRLNIDPKYNDQQLRATVNL 181

Query: 185 PKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVA 244
           PKGTG+TV++AVL QG+K+DEAK AGAD+VGGE+LIEQIKGGFMDFDKLIA+ DMM KVA
Sbjct: 182 PKGTGQTVRVAVLTQGEKVDEAKNAGADLVGGEDLIEQIKGGFMDFDKLIASPDMMPKVA 241

Query: 245 SLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDL 304
           SLG+ILGPRGLMP PKAGTV  ++ QA+ EFKKGKVE+R DKTGIVHIPFGK NF EEDL
Sbjct: 242 SLGKILGPRGLMPNPKAGTVATDIPQAISEFKKGKVEYRADKTGIVHIPFGKANFSEEDL 301

Query: 305 LINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 352
           L+NL A ++SVETNKP+GAKGVYWKSAHI SSMGPSIRLNIREMLDYKPPSN
Sbjct: 302 LVNLMAAVRSVETNKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDYKPPSN 351

[Close]

BLAST of Spo27163.1 vs. NCBI nr
Match: gi|720095626|ref|XP_010246738.1| (PREDICTED: 50S ribosomal protein L1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 458.8 bits (1179), Expect = 8.800e-126
Identity = 246/355 (69.30%), Postives = 284/355 (80.00%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS---SLCRLTLNQRERSCLKWVDF 60
           MA+AA  SL L YAS +    + PS      P+  +S   S+  L L  R R    WV  
Sbjct: 1   MASAAS-SLMLTYASPTVFPSETPSLCFKSSPVSPSSRSFSVYPLVLQSRGRKSFNWVQV 60

Query: 61  TSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATL-PSPTKPKKGKAALPLKSDR 120
           +S+K+S    S  V AAVAAEAEVA+  E+EG  G    + P+P+KPKKGKAALPLK DR
Sbjct: 61  SSRKESKFDSSLVVAAAVAAEAEVAEDVEQEGTEGSATAIAPAPSKPKKGKAALPLKRDR 120

Query: 121 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 180
           TRSKRFLEIQKLRE K+EYDL TA+SLMKQ + +KFVETAEAHFRLNIDPKYNDQQLRAT
Sbjct: 121 TRSKRFLEIQKLRENKKEYDLPTAISLMKQTAKSKFVETAEAHFRLNIDPKYNDQQLRAT 180

Query: 181 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 240
           V+LPKGTG+T+++AVL QG+K+DEAK AGAD+VGGE+LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 181 VNLPKGTGQTIRVAVLTQGEKVDEAKNAGADLVGGEDLIEQIKGGFMEFDKLIASPDMMP 240

Query: 241 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 300
           KVASLG+ILGPRGLMP PKAGTV  ++ QA+ EFKKGKVE+R DKTGIVHIPFGK NF E
Sbjct: 241 KVASLGKILGPRGLMPNPKAGTVATDIPQAIGEFKKGKVEYRADKTGIVHIPFGKANFSE 300

Query: 301 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 352
           EDLL+NL A +KS+E NKP+GAKGVYWKSAHI SSMGPSIRLNIREMLDYK PSN
Sbjct: 301 EDLLVNLIAAVKSIEANKPSGAKGVYWKSAHICSSMGPSIRLNIREMLDYKLPSN 354

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BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QF10_SPIOL (Ribosomal protein OS=Spinacia oleracea GN=SOVF_186350 PE=3 SV=1)

HSP 1 Score: 676.8 bits (1745), Expect = 1.400e-191
Identity = 351/352 (99.72%), Postives = 352/352 (100.00%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNF+EEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFKEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYE7_BETVU (Ribosomal protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g028990 PE=3 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 1.100e-159
Identity = 309/359 (86.07%), Postives = 321/359 (89.42%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSS-FQYQQD----PSFQTHFKPLLLNSSLCRLTLNQRERSCLKWV 60
           MA+ APPSL+L YASSS F YQQD    PSFQTH KP  LNSSL  LTLNQRER CLKWV
Sbjct: 1   MASIAPPSLTLSYASSSSFNYQQDLTFYPSFQTH-KPFFLNSSLYPLTLNQRERKCLKWV 60

Query: 61  DFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGG--VATLPSPTKPKKGKAALPLK 120
           D  SQKQ        V+AAVAAEAEVA+ EEEE ESGG  V TLP  TKPK GKAALPLK
Sbjct: 61  DVNSQKQPKFGSLHVVVAAVAAEAEVAETEEEERESGGGGVVTLPKSTKPKTGKAALPLK 120

Query: 121 SDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQL 180
            DRTRSKRFLEIQ+LREIKQEYDLKTA+SLMKQMS+TKFVETAEAHFRLNIDPKYNDQQL
Sbjct: 121 RDRTRSKRFLEIQRLREIKQEYDLKTAISLMKQMSTTKFVETAEAHFRLNIDPKYNDQQL 180

Query: 181 RATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSD 240
           RATVSLPKGTG  VKIAVLAQGDKIDEAKAAGADIVGGE+LIEQIKGGFMDFDKLIATSD
Sbjct: 181 RATVSLPKGTGTIVKIAVLAQGDKIDEAKAAGADIVGGEDLIEQIKGGFMDFDKLIATSD 240

Query: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300
           MMAKVASLGRILGPRGLMPTPKAGTVTPN+AQAVEEFKKGKVEFRVDKTGIVHIPFGKLN
Sbjct: 241 MMAKVASLGRILGPRGLMPTPKAGTVTPNIAQAVEEFKKGKVEFRVDKTGIVHIPFGKLN 300

Query: 301 FEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           FEE+DLLINL AT+KSVE NKPTGAKGVYWKSAHISSSMGPSI+LNIREMLDYK PSNA
Sbjct: 301 FEEDDLLINLLATVKSVEANKPTGAKGVYWKSAHISSSMGPSIKLNIREMLDYKLPSNA 358

[Close]

BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QZ58_GOSRA (Ribosomal protein OS=Gossypium raimondii GN=B456_004G170500 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 3.400e-124
Identity = 247/366 (67.49%), Postives = 285/366 (77.87%), Query Frame = 1

		  
Query: 3   TAAPPSLSLCYASSSFQYQQ------------DPSFQTHFKPLLLNSSLCRLTLNQRERS 62
           T    SL + YA++S  + Q             P+F  +  PL L +S+ R       +S
Sbjct: 6   TTPSSSLMITYAAASTVHAQALTPSVLSFKSNKPTFSIN--PLALKTSIDR-------KS 65

Query: 63  CLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEE---GESGGVATL--PSPTKPKK 122
            +KW +   Q+ S       V+AAVAAEAEVA+  +E       GG AT    +P KPKK
Sbjct: 66  GIKWANLCPQRDS----KHHVVAAVAAEAEVAEATDENDGVAAEGGTATAIATAPPKPKK 125

Query: 123 GKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNID 182
           GKAALPLK DRTRSKRFLEIQKLRE K+EYDLKTA+SL+K+MSSTKFVETAEAHFRLNID
Sbjct: 126 GKAALPLKRDRTRSKRFLEIQKLRETKKEYDLKTAISLLKEMSSTKFVETAEAHFRLNID 185

Query: 183 PKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDF 242
           PKYNDQQLRATV+LPKGTG+ VK+AVL QG+K DEAK AGADIVGGE+LIEQIKGGFMDF
Sbjct: 186 PKYNDQQLRATVNLPKGTGQKVKVAVLTQGEKFDEAKNAGADIVGGEDLIEQIKGGFMDF 245

Query: 243 DKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIV 302
           DKLIA+ DMM KVA LG+ILGPRGLMP PKAGTVTPN+ QA+EEFKKGKVE+R DKTGIV
Sbjct: 246 DKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTPNIPQAIEEFKKGKVEYRADKTGIV 305

Query: 303 HIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLD 352
           HIPFGK++F E+DLL+NL A +KS+ETNKP GAKGVYWKSAHI +SMGPSI+LNIREMLD
Sbjct: 306 HIPFGKVDFLEDDLLVNLLAAVKSIETNKPKGAKGVYWKSAHICTSMGPSIKLNIREMLD 358

[Close]

BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: K4AYG3_SOLLC (Ribosomal protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 3.400e-124
Identity = 248/354 (70.06%), Postives = 281/354 (79.38%), Query Frame = 1

		  
Query: 2   ATAAPPSLSLCYASSSFQYQQDP-SFQTHFKPLLLNS----SLCRLTLNQRERSCLKWVD 61
           +TA P +L+L   SS F  + +P S     KPLL  S    SL  L+L  +ER       
Sbjct: 3   STATPSTLTL---SSIFSQELNPNSLIFKSKPLLFTSHKSFSLHPLSLQYKER------- 62

Query: 62  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 121
               K  P      V+AA+AAEAEV D  E+EGE G VA L  P+KPKKGKAALPLK DR
Sbjct: 63  ----KNGPL-----VVAAMAAEAEVEDAVEQEGEEGAVAVLIPPSKPKKGKAALPLKRDR 122

Query: 122 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 181
           TRSKRFLEIQKLREIK+EYDLKTA+ L+KQ +S KFVETAEAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLREIKKEYDLKTAIELLKQTASLKFVETAEAHFRLNIDPKYNDQQLRAT 182

Query: 182 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 241
           V+LPKGTG+TVK+AVL QG+K DEAK AGADIVGGE+LIEQIKGGFM+FDKLIAT DMM 
Sbjct: 183 VNLPKGTGQTVKVAVLTQGEKFDEAKNAGADIVGGEDLIEQIKGGFMEFDKLIATPDMMP 242

Query: 242 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 301
           KVASLGR+LGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVH+PFGK NF E
Sbjct: 243 KVASLGRVLGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHLPFGKANFSE 302

Query: 302 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 351
           EDL+IN  A +KSVE NKP+GAKGVYWKSAH+ SSMGPSIRLN+REML+YK P+
Sbjct: 303 EDLIINFIAAVKSVEANKPSGAKGVYWKSAHVCSSMGPSIRLNVREMLEYKLPN 337

[Close]

BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Match: A0A061DV91_THECC (Ribosomal protein OS=Theobroma cacao GN=TCM_005841 PE=3 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 7.500e-124
Identity = 250/359 (69.64%), Postives = 287/359 (79.94%), Query Frame = 1

		  
Query: 1   MATAAPPS--LSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTL--NQRERSCLKWVD 60
           M T   PS  L L YA+S+   Q        FK      SL  L L  ++  +S LKW +
Sbjct: 1   MTTCTTPSSSLMLAYAASTVHGQDLTPSLLSFKSNKPTFSLYPLVLKTSKDRKSSLKWAN 60

Query: 61  FTSQKQSPKSVSFRVLAAVAAEAEVADMEE-EEGESGGV---ATLPSPTKPKKGKAALPL 120
              Q+ S K V   V+AAVAAEAEVA+  E +EG + G    AT P+P KPK+GKAALPL
Sbjct: 61  LCPQRDS-KHV---VVAAVAAEAEVAEAAEGKEGVAEGATATATAPAPPKPKRGKAALPL 120

Query: 121 KSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQ 180
           K DRTRSKRFLEIQKLRE K+EYDLKTA+SL+K+M+S KFVE+AEAHFRLNIDPKYNDQQ
Sbjct: 121 KRDRTRSKRFLEIQKLRENKKEYDLKTAISLLKEMTSAKFVESAEAHFRLNIDPKYNDQQ 180

Query: 181 LRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATS 240
           LRATV+LPKGTG+TVK+AVL QG+K DEAK AGADIVGGE+LIEQIK GFM+FDKLIA+ 
Sbjct: 181 LRATVNLPKGTGQTVKVAVLTQGEKFDEAKNAGADIVGGEDLIEQIKKGFMEFDKLIASP 240

Query: 241 DMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKL 300
           DMM KVASLG+ILGPRGLMP PKAGTVTPN+ QA+EEFKKGKVE+R DKTGIVHIPFGK+
Sbjct: 241 DMMVKVASLGKILGPRGLMPNPKAGTVTPNLPQAIEEFKKGKVEYRADKTGIVHIPFGKV 300

Query: 301 NFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSN 352
           +F EEDLL+N  A +KS+ETNKP GAKGVYWKSAHI +SMGPSIRL+IREMLDYKPPSN
Sbjct: 301 DFSEEDLLLNFLAAVKSIETNKPKGAKGVYWKSAHICTSMGPSIRLSIREMLDYKPPSN 355

[Close]

BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 4.400e-194
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 1

		  
Query: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60
           MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ
Sbjct: 1   MATAAPPSLSLCYASSSFQYQQDPSFQTHFKPLLLNSSLCRLTLNQRERSCLKWVDFTSQ 60

Query: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120
           KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK
Sbjct: 61  KQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSK 120

Query: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180
           RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP
Sbjct: 121 RFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLP 180

Query: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240
           KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS
Sbjct: 181 KGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVAS 240

Query: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300
           LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL
Sbjct: 241 LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLL 300

Query: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 353
           INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA
Sbjct: 301 INLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPSNA 352

[Close]

BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 8.300e-116
Identity = 231/354 (65.25%), Postives = 272/354 (76.84%), Query Frame = 1

		  
Query: 2   ATAAPPSLSLCYASSSFQYQQDPSFQTHF-----KPLLLNSSLCRLTLNQRERSCLKWVD 61
           A A   SL L YA++S + Q      + F     +P  L+  L  L    R+R C   +D
Sbjct: 3   ACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFPLLLLG-GSRDRRCAA-ID 62

Query: 62  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 121
             S  +        +++AVAAEA   D++ EE        +  P KPKKGKAAL LK DR
Sbjct: 63  RASNHKF-------IVSAVAAEA---DLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 122

Query: 122 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 181
           TRSKRFLEIQKLRE K+EYD+ TA+SL+KQ ++T+FVE+ EAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 182

Query: 182 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 241
           VSLPKGTG+TV +AVLAQG+K+DEAK+AGADIVG ++LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 183 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 242

Query: 242 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 301
           KVA LG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVEFR DKTGIVHIPFGK+NF E
Sbjct: 243 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 302

Query: 302 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 351
           EDLLIN  A +KSVETNKP GAKGVYWKSAHI SSMGPSI+LNIREM+D+KPP+
Sbjct: 303 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344

[Close]

BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.500e-72
Identity = 133/226 (58.85%), Postives = 176/226 (77.88%), Query Frame = 1

		  
Query: 116 RTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRA 175
           + RS+RF  + K  E  + Y    AL+LMK +S+ KF+ETAE H  L +DPKY DQQLR 
Sbjct: 2   KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRT 61

Query: 176 TVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMM 235
           TV LPKGTGK +++AV+ Q +K  EAK++GADIVGGE+LI++IK G +DFDKLIAT DMM
Sbjct: 62  TVMLPKGTGKIMRVAVITQNNKTHEAKSSGADIVGGEDLIDEIKKGRLDFDKLIATPDMM 121

Query: 236 AKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFE 295
             +A LG+ILGP+GLMP+PKAGTVT N+   ++EFK GK+E+++D++GI+HIPFGKLNF 
Sbjct: 122 MSIAKLGKILGPKGLMPSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFN 181

Query: 296 EEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIR 342
            EDL INL    +S++ N+P G+KG YWKS HI+S+MGPSI L+I+
Sbjct: 182 VEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227

[Close]

BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.300e-72
Identity = 131/229 (57.21%), Postives = 178/229 (77.73%), Query Frame = 1

		  
Query: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178
           S+RF E     +  + Y+   AL+L+K+ ++ KF ETAE H RL IDPKY DQQLR TV+
Sbjct: 6   SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVT 65

Query: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238
            PKGTG+TV++AV+A+G+K+ EA +AGADIVG EELI++I+ G MDF+ LIAT DMM KV
Sbjct: 66  FPKGTGQTVRVAVIARGEKVQEASSAGADIVGSEELIDEIQNGMMDFEVLIATPDMMPKV 125

Query: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298
           A LGR+LGPRGLMP+PK GTVT ++A A++EFK GK EFR D+TGIVH+ FGK +F  ED
Sbjct: 126 AKLGRLLGPRGLMPSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAED 185

Query: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYK 348
           LL+NL A  ++++ N+P+GAKG YW++  +S+SMGPSI++++  + D K
Sbjct: 186 LLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLK 234

[Close]

BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.300e-72
Identity = 137/229 (59.83%), Postives = 177/229 (77.29%), Query Frame = 1

		  
Query: 119 SKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVS 178
           S+R  + Q   E K  Y+   AL+L+K++++ KF ETAEAH RL IDPKY DQQLR TVS
Sbjct: 6   SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVS 65

Query: 179 LPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKV 238
           LPKGTG+TV++AV+ +G+K+ EA  AGADIVG EELIE+I  G MDF+ LIAT DMM KV
Sbjct: 66  LPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKV 125

Query: 239 ASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEED 298
           A LGR LGPRGLMP+PK GTVT ++  A+ EFK GK+EFR D+TGIVH+ FGK +F  ED
Sbjct: 126 AKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAED 185

Query: 299 LLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYK 348
           LL+NL A  ++V+ N+P+GAKG YW++ ++SSSMGPSI+++I  + D K
Sbjct: 186 LLVNLKALQETVDRNRPSGAKGRYWRTVYVSSSMGPSIQVDISALRDLK 233

[Close]

BLAST of Spo27163.1 vs. TAIR (Arabidopsis)
Match: AT3G63490.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 418.3 bits (1074), Expect = 4.700e-117
Identity = 231/354 (65.25%), Postives = 272/354 (76.84%), Query Frame = 1

		  
Query: 2   ATAAPPSLSLCYASSSFQYQQDPSFQTHF-----KPLLLNSSLCRLTLNQRERSCLKWVD 61
           A A   SL L YA++S + Q      + F     +P  L+  L  L    R+R C   +D
Sbjct: 3   ACATHSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFPLLLLG-GSRDRRCAA-ID 62

Query: 62  FTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDR 121
             S  +        +++AVAAEA   D++ EE        +  P KPKKGKAAL LK DR
Sbjct: 63  RASNHKF-------IVSAVAAEA---DLDTEEDLEQTATAVLDPPKPKKGKAALVLKRDR 122

Query: 122 TRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRAT 181
           TRSKRFLEIQKLRE K+EYD+ TA+SL+KQ ++T+FVE+ EAHFRLNIDPKYNDQQLRAT
Sbjct: 123 TRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRAT 182

Query: 182 VSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMA 241
           VSLPKGTG+TV +AVLAQG+K+DEAK+AGADIVG ++LIEQIKGGFM+FDKLIA+ DMM 
Sbjct: 183 VSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMV 242

Query: 242 KVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEE 301
           KVA LG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVEFR DKTGIVHIPFGK+NF E
Sbjct: 243 KVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTE 302

Query: 302 EDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREMLDYKPPS 351
           EDLLIN  A +KSVETNKP GAKGVYWKSAHI SSMGPSI+LNIREM+D+KPP+
Sbjct: 303 EDLLINFLAAVKSVETNKPKGAKGVYWKSAHICSSMGPSIKLNIREMIDFKPPT 344

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BLAST of Spo27163.1 vs. TAIR (Arabidopsis)
Match: AT2G42710.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 160.2 bits (404), Expect = 2.300e-39
Identity = 117/333 (35.14%), Postives = 180/333 (54.05%), Query Frame = 1

		  
Query: 48  ERSCLKWVDFTSQKQSPKSVSFR-----------VLAAVAAEAEVADMEEEE--GESGGV 107
           ++S  K V+ T   QSP+S ++             +  V+    VA + E+   GE+ G 
Sbjct: 75  QKSEPKNVESTENLQSPESANWTREEIRYVKDSPSINPVSYAQRVAPLPEDRVAGENEGD 134

Query: 108 ATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLRE----------IKQE--------YD 167
            T   P + ++ +  + L++   R  RFL    + E          +K E        +D
Sbjct: 135 RT---PEEMERERKRIELENRARR--RFLRANAVEEDTSSLPLPTLLKPELKHGKKPIFD 194

Query: 168 LKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGD 227
           L  A+  +K  +  KF ET EAH RL I+   ++  +R T++LP    K VK+A  A+G 
Sbjct: 195 LMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVKKDVKVAFFAEGA 254

Query: 228 KIDEAKAAGADIVGGEELIEQI-KGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPK 287
             ++AKAAGAD+VGG ELIE+I K G +DFD+ +AT  MM +V  + RIL   GLMP PK
Sbjct: 255 DAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISRILNNHGLMPNPK 314

Query: 288 AGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKP 344
            G+VT +V +AV++ K G  +FR+DKT I+H+P GK++F EE L  N+ A + ++   KP
Sbjct: 315 QGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSEEALRENVGAFMNALLLAKP 374

The following BLAST results are available for this feature:

BLAST of Spo27163.1 vs. NCBI nr
BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
BLAST of Spo27163.1 vs. TAIR (Arabidopsis)

BLAST of Spo27163.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|75311086\|sp\|Q9LE95.1\|RK1_SPIOL	7.1e-192	100.	RecName: Full=50S ribosomal pr...	[more]
gi\|902155062\|gb\|KNA05869.1\|	2.1e-191	99.7	hypothetical protein SOVF_1863...	[more]
gi\|731316270\|ref\|XP_010694860.1\|	1.6e-159	86.0	PREDICTED: 50S ribosomal prote...	[more]
gi\|720044107\|ref\|XP_010269778.1\|	6.7e-126	69.0	PREDICTED: 50S ribosomal prote...	[more]
gi\|720095626\|ref\|XP_010246738.1\|	8.8e-126	69.3	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo27163.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QF10_SPIOL	1.4e-191	99.7	Ribosomal protein OS=Spinacia ...	[more]
A0A0J8CYE7_BETVU	1.1e-159	86.0	Ribosomal protein OS=Beta vulg...	[more]
A0A0D2QZ58_GOSRA	3.4e-124	67.4	Ribosomal protein OS=Gossypium...	[more]
K4AYG3_SOLLC	3.4e-124	70.0	Ribosomal protein OS=Solanum l...	[more]
A0A061DV91_THECC	7.5e-124	69.6	Ribosomal protein OS=Theobroma...	[more]

BLAST of Spo27163.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RK1_SPIOL	4.4e-194	100.	50S ribosomal protein L1, chlo...	[more]
RK1_ARATH	8.3e-116	65.2	50S ribosomal protein L1, chlo...	[more]
RK1_GRATL	2.5e-72	58.8	50S ribosomal protein L1, chlo...	[more]
RL1_CYAP7	7.3e-72	57.2	50S ribosomal protein L1 OS=Cy...	[more]
RL1_MICAN	7.3e-72	59.8	50S ribosomal protein L1 OS=Mi...	[more]

BLAST of Spo27163.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G63490.1	4.7e-117	65.2	Ribosomal protein L1p/L10e fam...	[more]
AT2G42710.1	2.3e-39	35.1	Ribosomal protein L1p/L10e fam...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005878	Ribosomal protein L1, bacterial-type	HAMAP	MF_01318_B	Ribosomal_L1_B	coord: 115..343 score: 3
IPR005878	Ribosomal protein L1, bacterial-type	TIGRFAMs	TIGR01169	TIGR01169	coord: 118..342 score: 1.1
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	3.30.190.20		coord: 132..182 score: 2.1E-41coord: 275..341 score: 2.1
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790		coord: 183..273 score: 1.9
IPR023673	Ribosomal protein L1, conserved site	PROSITE	PS01199	RIBOSOMAL_L1	coord: 235..253 scor
IPR023674	Ribosomal protein L1-like	unknown	SSF56808	Ribosomal protein L1	coord: 122..340 score: 8.24
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 66..346 score: 2.3
None	No IPR available	PANTHER	PTHR23105:SF5	39S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL	coord: 66..346 score: 2.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0046854	phosphatidylinositol phosphorylation
biological_process	GO:0006435	threonyl-tRNA aminoacylation
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0009396	folic acid-containing compound biosynthetic process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0000105	histidine biosynthetic process
biological_process	GO:0006021	inositol biosynthetic process
biological_process	GO:0019872	streptomycin biosynthetic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0060003	copper ion export
biological_process	GO:0045727	positive regulation of translation
biological_process	GO:0009058	biosynthetic process
biological_process	GO:1901135	carbohydrate derivative metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0016043	cellular component organization
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0071806	protein transmembrane transport
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0010342	endosperm cellularization
biological_process	GO:0000914	phragmoplast assembly
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006810	transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0009306	protein secretion
biological_process	GO:0006605	protein targeting
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0030154	cell differentiation
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006449	regulation of translational termination
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:1901671	positive regulation of superoxide dismutase activity
biological_process	GO:0006457	protein folding
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009987	cellular process
biological_process	GO:0019637	organophosphate metabolic process
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010114	response to red light
biological_process	GO:0009744	response to sucrose
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0000272	polysaccharide catabolic process
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0009637	response to blue light
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0009554	megasporogenesis
biological_process	GO:0010014	meristem initiation
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0009934	regulation of meristem structural organization
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0010218	response to far red light
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0005976	polysaccharide metabolic process
biological_process	GO:0044281	small molecule metabolic process
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0009631	cold acclimation
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0030091	protein repair
biological_process	GO:0031425	chloroplast RNA processing
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0032259	methylation
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0006547	histidine metabolic process
biological_process	GO:0006427	histidyl-tRNA aminoacylation
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0009790	embryo development
biological_process	GO:0042794	plastid rRNA transcription
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0006788	heme oxidation
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0071494	cellular response to UV-C
biological_process	GO:0010019	chloroplast-nucleus signaling pathway
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0010024	phytochromobilin biosynthetic process
biological_process	GO:0007165	signal transduction
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006397	mRNA processing
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0015979	photosynthesis
biological_process	GO:0042793	plastid transcription
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0042450	arginine biosynthetic process via ornithine
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006508	proteolysis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006396	RNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006281	DNA repair
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0032502	developmental process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0070455	positive regulation of heme biosynthetic process
biological_process	GO:0019852	L-ascorbic acid metabolic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0080167	response to karrikin
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0015031	protein transport
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006223	uracil salvage
biological_process	GO:0044206	UMP salvage
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0009657	plastid organization
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0042644	chloroplast nucleoid
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0019031	viral envelope
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0009536	plastid
cellular_component	GO:0005829	cytosol
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0018444	translation release factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0044435	plastid part
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009517	PSII associated light-harvesting complex II
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0030532	small nuclear ribonucleoprotein complex
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0009508	plastid chromosome
cellular_component	GO:0000311	plastid large ribosomal subunit
cellular_component	GO:0005835	fatty acid synthase complex
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004314	[acyl-carrier-protein] S-malonyltransferase activity
molecular_function	GO:0043495	protein membrane anchor
molecular_function	GO:0019136	deoxynucleoside kinase activity
molecular_function	GO:0070330	aromatase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003904	deoxyribodipyrimidine photo-lyase activity
molecular_function	GO:0016773	phosphotransferase activity, alcohol group as acceptor
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0009881	photoreceptor activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016688	L-ascorbate peroxidase activity
molecular_function	GO:0051738	xanthophyll binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0004845	uracil phosphoribosyltransferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004017	adenylate kinase activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0004392	heme oxygenase (decyclizing) activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0004853	uroporphyrinogen decarboxylase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0008836	diaminopimelate decarboxylase activity
molecular_function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0004821	histidine-tRNA ligase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004462	lactoylglutathione lyase activity
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0033743	peptide-methionine (R)-S-oxide reductase activity
molecular_function	GO:0070191	methionine-R-sulfoxide reductase activity
molecular_function	GO:0004008	copper-exporting ATPase activity
molecular_function	GO:0052833	inositol monophosphate 4-phosphatase activity
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0052832	inositol monophosphate 3-phosphatase activity
molecular_function	GO:0008934	inositol monophosphate 1-phosphatase activity
molecular_function	GO:0004401	histidinol-phosphatase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0030272	5-formyltetrahydrofolate cyclo-ligase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0004829	threonine-tRNA ligase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0016149	translation release factor activity, codon specific
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity
molecular_function	GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0004056	argininosuccinate lyase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo27346	0.84	Barchart \| Table
Spo23384	0.81	Barchart \| Table
Spo00872	0.81	Barchart \| Table
Spo12302	0.79	Barchart \| Table
Spo22999	0.78	Barchart \| Table
Spo09149	0.78	Barchart \| Table
Spo19459	0.78	Barchart \| Table
Spo10493	0.78	Barchart \| Table
Spo03195	0.77	Barchart \| Table
Spo10916	0.77	Barchart \| Table
Spo24081	0.77	Barchart \| Table
Spo01305	0.76	Barchart \| Table
Spo18111	0.76	Barchart \| Table
Spo04653	0.75	Barchart \| Table
Spo05733	0.75	Barchart \| Table
Spo23767	0.75	Barchart \| Table
Spo19288	0.74	Barchart \| Table
Spo11951	0.74	Barchart \| Table
Spo09267	0.74	Barchart \| Table
Spo09536	0.74	Barchart \| Table
Spo01923	0.74	Barchart \| Table
Spo06398	0.74	Barchart \| Table
Spo16955	0.74	Barchart \| Table
Spo20387	0.73	Barchart \| Table
Spo26006	0.73	Barchart \| Table
Spo01954	0.73	Barchart \| Table
Spo24590	0.73	Barchart \| Table
Spo02512	0.73	Barchart \| Table
Spo00405	0.73	Barchart \| Table
Spo03906	0.73	Barchart \| Table
Spo08715	0.73	Barchart \| Table
Spo15302	0.73	Barchart \| Table
Spo11739	0.72	Barchart \| Table
Spo25817	0.72	Barchart \| Table
Spo07915	0.72	Barchart \| Table
Spo17491	0.72	Barchart \| Table
Spo16996	0.72	Barchart \| Table
Spo07187	0.72	Barchart \| Table
Spo10473	0.72	Barchart \| Table
Spo16115	0.72	Barchart \| Table
Spo22201	0.71	Barchart \| Table
Spo04682	0.71	Barchart \| Table
Spo13180	0.71	Barchart \| Table
Spo24016	0.71	Barchart \| Table
Spo24153	0.71	Barchart \| Table
Spo02696	0.70	Barchart \| Table
Spo03018	0.70	Barchart \| Table
Spo04433	0.70	Barchart \| Table
Spo12228	0.70	Barchart \| Table
Spo07114	0.70	Barchart \| Table
Spo10744	0.70	Barchart \| Table
Spo22715	0.70	Barchart \| Table
Spo27291	0.70	Barchart \| Table
Spo02513	0.69	Barchart \| Table
Spo00155	0.69	Barchart \| Table
Spo02068	0.69	Barchart \| Table
Spo02964	0.69	Barchart \| Table
Spo07306	0.69	Barchart \| Table
Spo11346	0.69	Barchart \| Table
Spo19019	0.69	Barchart \| Table
Spo23712	0.69	Barchart \| Table
Spo23721	0.69	Barchart \| Table
Spo26673	0.69	Barchart \| Table
Spo21808	0.68	Barchart \| Table
Spo09335	0.68	Barchart \| Table
Spo14256	0.68	Barchart \| Table
Spo22683	0.68	Barchart \| Table
Spo10106	0.68	Barchart \| Table
Spo08824	0.68	Barchart \| Table
Spo05680	0.68	Barchart \| Table
Spo23249	0.68	Barchart \| Table
Spo26853	0.68	Barchart \| Table
Spo02221	0.68	Barchart \| Table
Spo02648	0.68	Barchart \| Table
Spo15084	0.68	Barchart \| Table
Spo24690	0.67	Barchart \| Table
Spo03609	0.67	Barchart \| Table
Spo11221	0.67	Barchart \| Table
Spo10619	0.67	Barchart \| Table
Spo02001	0.67	Barchart \| Table
Spo23283	0.67	Barchart \| Table
Spo21660	0.67	Barchart \| Table
Spo14403	0.67	Barchart \| Table
Spo15015	0.67	Barchart \| Table
Spo19917	0.67	Barchart \| Table
Spo20027	0.67	Barchart \| Table
Spo06953	0.67	Barchart \| Table
Spo13107	0.66	Barchart \| Table
Spo13490	0.66	Barchart \| Table
Spo17367	0.66	Barchart \| Table
Spo18398	0.66	Barchart \| Table
Spo26911	0.66	Barchart \| Table
Spo09317	0.66	Barchart \| Table
Spo21074	0.66	Barchart \| Table
Spo22326	0.66	Barchart \| Table
Spo22507	0.66	Barchart \| Table
Spo22530	0.66	Barchart \| Table
Spo22654	0.66	Barchart \| Table
Spo00013	0.66	Barchart \| Table
Spo01437	0.66	Barchart \| Table
Spo30004	0.66	Barchart \| Table
Spo26852	0.66	Barchart \| Table
Spo11509	0.66	Barchart \| Table
Spo11446	0.66	Barchart \| Table
Spo12875	0.66	Barchart \| Table
Spo11417	0.66	Barchart \| Table
Spo03882	0.66	Barchart \| Table
Spo01101	0.66	Barchart \| Table
Spo00178	0.66	Barchart \| Table
Spo03066	0.66	Barchart \| Table
Spo06499	0.65	Barchart \| Table
Spo14013	0.65	Barchart \| Table
Spo20447	0.65	Barchart \| Table
Spo09387	0.65	Barchart \| Table
Spo06594	0.65	Barchart \| Table
Spo23772	0.65	Barchart \| Table
Spo09428	0.65	Barchart \| Table
Spo20952	0.65	Barchart \| Table