Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTATTGTTCGTCAAGAAATCAACCAAACTTCTTAGAACATCGAACCCAAAACTGGATCAATCTGAATCAAAAGCTCTGAAATGTTTCCAATCATACTTATCAGAGAGCCTCAATCGATTGCTCTCTGATAAAAGACATGGATCACTTTCTCTCTCCTGGTTCATCCCCTGTTTCAATTTCTTACAGGAGATAAACAGAGCATTCACAAAATTGGTGAAAGATTTAGACCACCCATTTACCAAATGGAAGGGAGATTTGGCAGAAGATTATCTTTCACACAGTTTAAACATTTTAGATGCTTTAAATTCAATCAGTTCATCCATTTCTCATCTGGGCAACTCTCGACTCACTCTCTGTCATGCGGTGAGTTTAATCCCTAATTCGTCTTCTTCAGCTCTTCATCACTTGAAACCAATCAAACCCAGAAAAATTGAACCTGGGAATTGCAAGAAAAAAGGTGTTGAAAGCTTTGATTGTGACAAAGAAAGGGCAATTTATGAAGCTATGGTGAAATTGAAAGGGGTTAATTTGGTTGTTTTTAGGGTTTTGTTGTGTGGGGTAAGTGATGGAAGTGTTGATCATCTAGGTTTGTTGAATTCTTCTGAATTGGAGGGATTTGATTTGGGGTTTGGTGGAAATTTGATGGTTAAGGAGATTGAAGAGGTGAATGTTACAGTGAAAGAGGTTGAAGATGGTTTGATTGAAGGTAGAAAGAGCAGTAACTCTAAATTAGCAGCAGAAGAATTGAAGAACAAATTGGGTGAACTTGAGAATTTACTGGAAATGGTGAATAAAGAGGTTAATTGCTTATTCTCTGAGGTTTTGGCTAGGAGAAGTGAGTTAATCAATTGTCTTAGGCTTTGTAAAAGTAACAATTAG ATGGTATTGTTCGTCAAGAAATCAACCAAACTTCTTAGAACATCGAACCCAAAACTGGATCAATCTGAATCAAAAGCTCTGAAATGTTTCCAATCATACTTATCAGAGAGCCTCAATCGATTGCTCTCTGATAAAAGACATGGATCACTTTCTCTCTCCTGGTTCATCCCCTGTTTCAATTTCTTACAGGAGATAAACAGAGCATTCACAAAATTGGTGAAAGATTTAGACCACCCATTTACCAAATGGAAGGGAGATTTGGCAGAAGATTATCTTTCACACAGTTTAAACATTTTAGATGCTTTAAATTCAATCAGTTCATCCATTTCTCATCTGGGCAACTCTCGACTCACTCTCTGTCATGCGGTGAGTTTAATCCCTAATTCGTCTTCTTCAGCTCTTCATCACTTGAAACCAATCAAACCCAGAAAAATTGAACCTGGGAATTGCAAGAAAAAAGGTGTTGAAAGCTTTGATTGTGACAAAGAAAGGGCAATTTATGAAGCTATGGTGAAATTGAAAGGGGTTAATTTGGTTGTTTTTAGGGTTTTGTTGTGTGGGGTAAGTGATGGAAGTGTTGATCATCTAGGTTTGTTGAATTCTTCTGAATTGGAGGGATTTGATTTGGGGTTTGGTGGAAATTTGATGGTTAAGGAGATTGAAGAGGTGAATGTTACAGTGAAAGAGGTTGAAGATGGTTTGATTGAAGGTAGAAAGAGCAGTAACTCTAAATTAGCAGCAGAAGAATTGAAGAACAAATTGGGTGAACTTGAGAATTTACTGGAAATGGTGAATAAAGAGGTTAATTGCTTATTCTCTGAGGTTTTGGCTAGGAGAAGTGAGTTAATCAATTGTCTTAGGCTTTGTAAAAGTAACAATTAG ATGGTATTGTTCGTCAAGAAATCAACCAAACTTCTTAGAACATCGAACCCAAAACTGGATCAATCTGAATCAAAAGCTCTGAAATGTTTCCAATCATACTTATCAGAGAGCCTCAATCGATTGCTCTCTGATAAAAGACATGGATCACTTTCTCTCTCCTGGTTCATCCCCTGTTTCAATTTCTTACAGGAGATAAACAGAGCATTCACAAAATTGGTGAAAGATTTAGACCACCCATTTACCAAATGGAAGGGAGATTTGGCAGAAGATTATCTTTCACACAGTTTAAACATTTTAGATGCTTTAAATTCAATCAGTTCATCCATTTCTCATCTGGGCAACTCTCGACTCACTCTCTGTCATGCGGTGAGTTTAATCCCTAATTCGTCTTCTTCAGCTCTTCATCACTTGAAACCAATCAAACCCAGAAAAATTGAACCTGGGAATTGCAAGAAAAAAGGTGTTGAAAGCTTTGATTGTGACAAAGAAAGGGCAATTTATGAAGCTATGGTGAAATTGAAAGGGGTTAATTTGGTTGTTTTTAGGGTTTTGTTGTGTGGGGTAAGTGATGGAAGTGTTGATCATCTAGGTTTGTTGAATTCTTCTGAATTGGAGGGATTTGATTTGGGGTTTGGTGGAAATTTGATGGTTAAGGAGATTGAAGAGGTGAATGTTACAGTGAAAGAGGTTGAAGATGGTTTGATTGAAGGTAGAAAGAGCAGTAACTCTAAATTAGCAGCAGAAGAATTGAAGAACAAATTGGGTGAACTTGAGAATTTACTGGAAATGGTGAATAAAGAGGTTAATTGCTTATTCTCTGAGGTTTTGGCTAGGAGAAGTGAGTTAATCAATTGTCTTAGGCTTTGTAAAAGTAACAATTAG MVLFVKKSTKLLRTSNPKLDQSESKALKCFQSYLSESLNRLLSDKRHGSLSLSWFIPCFNFLQEINRAFTKLVKDLDHPFTKWKGDLAEDYLSHSLNILDALNSISSSISHLGNSRLTLCHAVSLIPNSSSSALHHLKPIKPRKIEPGNCKKKGVESFDCDKERAIYEAMVKLKGVNLVVFRVLLCGVSDGSVDHLGLLNSSELEGFDLGFGGNLMVKEIEEVNVTVKEVEDGLIEGRKSSNSKLAAEELKNKLGELENLLEMVNKEVNCLFSEVLARRSELINCLRLCKSNN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo27165.1 vs. NCBI nr
Match: gi|902193147|gb|KNA12225.1| (hypothetical protein SOVF_127860 [Spinacia oleracea]) HSP 1 Score: 570.9 bits (1470), Expect = 1.300e-159 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1
BLAST of Spo27165.1 vs. NCBI nr
Match: gi|731316242|ref|XP_010694763.1| (PREDICTED: uncharacterized protein LOC104907519 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 377.9 bits (969), Expect = 1.600e-101 Identity = 205/293 (69.97%), Postives = 243/293 (82.94%), Query Frame = 1
BLAST of Spo27165.1 vs. NCBI nr
Match: gi|731414789|ref|XP_010659289.1| (PREDICTED: protein BPS1, chloroplastic-like [Vitis vinifera]) HSP 1 Score: 165.6 bits (418), Expect = 1.300e-37 Identity = 121/314 (38.54%), Postives = 182/314 (57.96%), Query Frame = 1
BLAST of Spo27165.1 vs. NCBI nr
Match: gi|566186539|ref|XP_002313325.2| (hypothetical protein POPTR_0009s06070g [Populus trichocarpa]) HSP 1 Score: 161.0 bits (406), Expect = 3.200e-36 Identity = 113/315 (35.87%), Postives = 180/315 (57.14%), Query Frame = 1
BLAST of Spo27165.1 vs. NCBI nr
Match: gi|590724343|ref|XP_007052440.1| (Uncharacterized protein TCM_005819 [Theobroma cacao]) HSP 1 Score: 159.8 bits (403), Expect = 7.000e-36 Identity = 112/308 (36.36%), Postives = 175/308 (56.82%), Query Frame = 1
BLAST of Spo27165.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QY97_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127860 PE=4 SV=1) HSP 1 Score: 570.9 bits (1470), Expect = 9.200e-160 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1
BLAST of Spo27165.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYS9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g028890 PE=4 SV=1) HSP 1 Score: 377.9 bits (969), Expect = 1.100e-101 Identity = 205/293 (69.97%), Postives = 243/293 (82.94%), Query Frame = 1
BLAST of Spo27165.1 vs. UniProtKB/TrEMBL
Match: F6HHW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00090 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 8.900e-38 Identity = 121/314 (38.54%), Postives = 182/314 (57.96%), Query Frame = 1
BLAST of Spo27165.1 vs. UniProtKB/TrEMBL
Match: B9HNU3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06070g PE=4 SV=2) HSP 1 Score: 161.0 bits (406), Expect = 2.200e-36 Identity = 113/315 (35.87%), Postives = 180/315 (57.14%), Query Frame = 1
BLAST of Spo27165.1 vs. UniProtKB/TrEMBL
Match: A0A061DW09_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005819 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 4.900e-36 Identity = 112/308 (36.36%), Postives = 175/308 (56.82%), Query Frame = 1
BLAST of Spo27165.1 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.600e-11 Identity = 75/311 (24.12%), Postives = 134/311 (43.09%), Query Frame = 1
BLAST of Spo27165.1 vs. TAIR (Arabidopsis)
Match: AT1G01550.1 (Protein of unknown function (DUF793)) HSP 1 Score: 70.1 bits (170), Expect = 2.600e-12 Identity = 75/311 (24.12%), Postives = 134/311 (43.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27165.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo27165.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo27165.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Spo27165.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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