Spo27185 (gene)

Overview
NameSpo27185
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03691 : 16873 .. 17439 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGTTTTCATGCCAAAAAGAATCAAACAACATTGAAGAATTTAGTTTTCCTGTTGTTTCTAACAACAACAACGTTAACCCATTATCAAACTTCATGTTATCGTCTTCCTCAGCATCGTCGTCGTCGTTATGGCGGATTTCGTCGAGGGTTTACCATCACCAAGAAGATTATAATTGTTATTATGAAGATCGTAAAGAGGAAGATGATGATCGTATGGAAGTTCGTAGTATGTGTGAAGAGATTACGCCGTGTTGGAGGGATGATATTGAAAGGAGCATGAGTTTTCAAGGCAAGGATGTGGTTGAGGTTGAAGAAAGCATGGATTATTTGTGGGAAGATTTTAATGGAGAAGAGGAGAAAGAGAAGTTTAAAGTGAGAAGAAGAAGAAGTAGTGAAGAAATTATGAGTTTTATGCAAGTCACTAAAATGGGTAGGGCTAGACCTAGTAGTAATAGTAGTAGTGGTGGTGGTACTAAAATGTTGGTTATTGGCAAGTTTTTGAAAGGACTTGTGTCATTTAGGAAGTCATCTCAACTCAAGTTTTCAAAACCAAGATTTTGA

mRNA sequence

ATGAACATGTTTTCATGCCAAAAAGAATCAAACAACATTGAAGAATTTAGTTTTCCTGTTGTTTCTAACAACAACAACGTTAACCCATTATCAAACTTCATGTTATCGTCTTCCTCAGCATCGTCGTCGTCGTTATGGCGGATTTCGTCGAGGGTTTACCATCACCAAGAAGATTATAATTGTTATTATGAAGATCGTAAAGAGGAAGATGATGATCGTATGGAAGTTCGTAGTATGTGTGAAGAGATTACGCCGTGTTGGAGGGATGATATTGAAAGGAGCATGAGTTTTCAAGGCAAGGATGTGGTTGAGGTTGAAGAAAGCATGGATTATTTGTGGGAAGATTTTAATGGAGAAGAGGAGAAAGAGAAGTTTAAAGTGAGAAGAAGAAGAAGTAGTGAAGAAATTATGAGTTTTATGCAAGTCACTAAAATGGGTAGGGCTAGACCTAGTAGTAATAGTAGTAGTGGTGGTGGTACTAAAATGTTGGTTATTGGCAAGTTTTTGAAAGGACTTGTGTCATTTAGGAAGTCATCTCAACTCAAGTTTTCAAAACCAAGATTTTGA

Coding sequence (CDS)

ATGAACATGTTTTCATGCCAAAAAGAATCAAACAACATTGAAGAATTTAGTTTTCCTGTTGTTTCTAACAACAACAACGTTAACCCATTATCAAACTTCATGTTATCGTCTTCCTCAGCATCGTCGTCGTCGTTATGGCGGATTTCGTCGAGGGTTTACCATCACCAAGAAGATTATAATTGTTATTATGAAGATCGTAAAGAGGAAGATGATGATCGTATGGAAGTTCGTAGTATGTGTGAAGAGATTACGCCGTGTTGGAGGGATGATATTGAAAGGAGCATGAGTTTTCAAGGCAAGGATGTGGTTGAGGTTGAAGAAAGCATGGATTATTTGTGGGAAGATTTTAATGGAGAAGAGGAGAAAGAGAAGTTTAAAGTGAGAAGAAGAAGAAGTAGTGAAGAAATTATGAGTTTTATGCAAGTCACTAAAATGGGTAGGGCTAGACCTAGTAGTAATAGTAGTAGTGGTGGTGGTACTAAAATGTTGGTTATTGGCAAGTTTTTGAAAGGACTTGTGTCATTTAGGAAGTCATCTCAACTCAAGTTTTCAAAACCAAGATTTTGA

Protein sequence

MNMFSCQKESNNIEEFSFPVVSNNNNVNPLSNFMLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIERSMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSNSSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo27185.1Spo27185.1mRNA


Homology
[Close]
BLAST of Spo27185.1 vs. NCBI nr
Match: gi|902189965|gb|KNA11518.1| (hypothetical protein SOVF_134570 [Spinacia oleracea])

HSP 1 Score: 299.3 bits (765), Expect = 4.800e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 

		  

Query: 34  MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 93
           MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 60

Query: 94  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSN 153
           SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRA PSSN
Sbjct: 61  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRASPSSN 120

Query: 154 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 189
           SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF
Sbjct: 121 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 155
[Close]
BLAST of Spo27185.1 vs. NCBI nr
Match: gi|387965712|gb|AFK13841.1| (hypothetical protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.0 bits (367), Expect = 6.700e-32
Identity = 109/205 (53.17%), Postives = 125/205 (60.98%), Query Frame = 1 

		  

Query: 1   MNMFSCQKESN--------NIEEFSFPVVSNNNNVNPLSNFMLSSSSASSSSLWRISSRV 60
           MNMFS  KE+N        N EEFSFPV+    N NPLS+FMLSSSSASSSSLWRISSRV
Sbjct: 1   MNMFSYPKETNKTISSSSTNTEEFSFPVI----NSNPLSSFMLSSSSASSSSLWRISSRV 60

Query: 61  YHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEITPCWRDDIERSMSFQGKDVV 120
           YHH QEDY  Y ED  +E +        DR EVRSMCEEI P  R +I+RSMSFQ  +  
Sbjct: 61  YHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCEEILPSRRSEIDRSMSFQSNNEF 120

Query: 121 EVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSNSSSGGGTKM 180
           +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V KM R               
Sbjct: 121 KVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVAKMDRKS------------- 179

Query: 181 LVIGKFLKGLVSFRKSSQLKFSKPR 188
               K LK LVS RKS+QLK  K +
Sbjct: 181 ---RKLLKRLVSIRKSAQLKAFKTK 179
[Close]
BLAST of Spo27185.1 vs. NCBI nr
Match: gi|870862725|gb|KMT13913.1| (hypothetical protein BVRB_4g077540 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.9 bits (359), Expect = 5.700e-31
Identity = 98/164 (59.76%), Postives = 113/164 (68.90%), Query Frame = 1 

		  

Query: 34  MLSSSSASSSSLWRISSRVYHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEIT 93
           MLSSSSASSSSLWRISSRVYHH QEDY  Y ED  +E +        DR EVRSMC+EI 
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCDEIL 60

Query: 94  PCWRDDIERSMSFQGKDVVEVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVT 153
           P  R +I+RSMSFQ  +  +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V 
Sbjct: 61  PSRRSEIDRSMSFQSNNEFKVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVA 120

Query: 154 KMGRARPSSNSSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPR 188
           KM   R SSNS+S   TKMLVIGK LK LVS RKS+QLK  K +
Sbjct: 121 KMD--RKSSNSNSSSSTKMLVIGKLLKRLVSIRKSAQLKAFKTK 156
[Close]
BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXT7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134570 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.300e-78
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 

		  

Query: 34  MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 93
           MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHQEDYNCYYEDRKEEDDDRMEVRSMCEEITPCWRDDIER 60

Query: 94  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSN 153
           SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRA PSSN
Sbjct: 61  SMSFQGKDVVEVEESMDYLWEDFNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRASPSSN 120

Query: 154 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 189
           SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF
Sbjct: 121 SSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPRF 155
[Close]
BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Match: J3SDF1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.700e-32
Identity = 109/205 (53.17%), Postives = 125/205 (60.98%), Query Frame = 1 

		  

Query: 1   MNMFSCQKESN--------NIEEFSFPVVSNNNNVNPLSNFMLSSSSASSSSLWRISSRV 60
           MNMFS  KE+N        N EEFSFPV+    N NPLS+FMLSSSSASSSSLWRISSRV
Sbjct: 1   MNMFSYPKETNKTISSSSTNTEEFSFPVI----NSNPLSSFMLSSSSASSSSLWRISSRV 60

Query: 61  YHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEITPCWRDDIERSMSFQGKDVV 120
           YHH QEDY  Y ED  +E +        DR EVRSMCEEI P  R +I+RSMSFQ  +  
Sbjct: 61  YHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCEEILPSRRSEIDRSMSFQSNNEF 120

Query: 121 EVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVTKMGRARPSSNSSSGGGTKM 180
           +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V KM R               
Sbjct: 121 KVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVAKMDRKS------------- 179

Query: 181 LVIGKFLKGLVSFRKSSQLKFSKPR 188
               K LK LVS RKS+QLK  K +
Sbjct: 181 ---RKLLKRLVSIRKSAQLKAFKTK 179
[Close]
BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPF3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g077540 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.000e-31
Identity = 98/164 (59.76%), Postives = 113/164 (68.90%), Query Frame = 1 

		  

Query: 34  MLSSSSASSSSLWRISSRVYHH-QEDYNCYYEDRKEEDD--------DRMEVRSMCEEIT 93
           MLSSSSASSSSLWRISSRVYHH QEDY  Y ED  +E +        DR EVRSMC+EI 
Sbjct: 1   MLSSSSASSSSLWRISSRVYHHYQEDY--YDEDGGQEAENEDYDHYYDRREVRSMCDEIL 60

Query: 94  PCWRDDIERSMSFQGKDVVEVEESMDYLWED-FNGEEEKEKFKVRRRRSSEEIMSFMQVT 153
           P  R +I+RSMSFQ  +  +VEESMDYLWE+ FN EE K+    R+  S E+ M  M+V 
Sbjct: 61  PSRRSEIDRSMSFQSNNEFKVEESMDYLWENHFNQEEIKD----RKSISGEDNMGVMEVA 120

Query: 154 KMGRARPSSNSSSGGGTKMLVIGKFLKGLVSFRKSSQLKFSKPR 188
           KM   R SSNS+S   TKMLVIGK LK LVS RKS+QLK  K +
Sbjct: 121 KMD--RKSSNSNSSSSTKMLVIGKLLKRLVSIRKSAQLKAFKTK 156
The following BLAST results are available for this feature:
BLAST of Spo27185.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902189965|gb|KNA11518.1|4.8e-7899.3hypothetical protein SOVF_1345... [more]
gi|387965712|gb|AFK13841.1|6.7e-3253.1hypothetical protein [Beta vul... [more]
gi|870862725|gb|KMT13913.1|5.7e-3159.7hypothetical protein BVRB_4g07... [more]
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BLAST of Spo27185.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QXT7_SPIOL3.3e-7899.3Uncharacterized protein OS=Spi... [more]
J3SDF1_BETVU4.7e-3253.1Uncharacterized protein OS=Bet... [more]
A0A0J8CPF3_BETVU4.0e-3159.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo27185.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27185.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010114 response to red light
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0016311 dephosphorylation
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0016310 phosphorylation
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0048510 regulation of timing of transition from vegetative to reproductive phase
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0042761 very long-chain fatty acid biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009790 embryo development
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0046520 sphingoid biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0016117 carotenoid biosynthetic process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0045703 ketoreductase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008967 phosphoglycolate phosphatase activity
molecular_function GO:0003919 FMN adenylyltransferase activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0018454 acetoacetyl-CoA reductase activity
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0008531 riboflavin kinase activity
RNA-Seq Expression