Spo27236 (gene)

Overview
NameSpo27236
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRNA-binding region RNP-1 protein
LocationSpoScf_00998 : 132781 .. 135955 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTGGTGGAATTATGTTATGACTGGAAATGTTCAAATCAGTATAGGATGAAGCAGATTTTCCAAGGTTTCAATGCTCAATATGTACTAGTATGTCTGTTGGTTCATTGCAAACTGTCTATTATAGGTTGGTAAAGATTTTAGTTTTCCATTTTTAGGCTTTTAGGTACCATTTGACTCTTCATTTCACCTCACCTCAAGTACCCGTCTCGGGTACTCGACACTTGAACATTATTATGACACATTTAAACACTCCATTTCAAGCCAACATTAAGCGAATTTTTTTATAAATATTTGTGTCCGACACTTAGACACATGATCGTGTCTGAGTACAGCACTACAGCCTGCTGTTCGTTCGCCAGACAATTGGATTACCATTTTTCCATCCACAATTCAGGCATTCATCACTTCAACTACTCATGCTGGTTCCCTTTCCCCTTTCTCTTCATTTCATGCTGTCAATTATCTTTTGTAGTAATCCTTTTGTCATATTTGAATTTCTGACTCTGGCTTAAGTTAACACACTAGTTTTAGTGAATGACTGCTCACTGCCAAAACACCAGCTTGTAATTGATAAGACTGCATTCAATCAATCAGTCCAGTCCGGTGACATGTGATAACATGTATGGCAGTTTCCTTTAATTGATAAGACTGCATTCAATCAAAGTTCCAATGTTTGGAACATTTCAGCTTTTGGATCAAGGGTGATGTTTAGCAGTCCTAAAAGAAGGATTCATGATATCAGTTGGAGCACTTATATTAAATAAAAAGCCTGTACGGCTTTCAATGTTTGAACTCCCAAGTGGTGGCTTGAACCAAATTTGATTTTCTTGTCCTAATCTCCTAAGGAGAGACACTGTTAGGAGTTCCTTCGTCCTTGTTTTGTGGAATGTTCTTATTGTCTGTAAGATATATCTAGATTGCCATTTTGTTCGATATTTGATATGTGTATGAAGTCATTCATATTATTTGGAGAATGTTCAGGTATTTTGGCTATGGGAAGTGAACAAGAGAAGAAGGAATATGCTGACTTTATGGAGAAGGTGAAGCGGACGGTGTACCTTGATAATCTCTCACCCCAGGTTACTGATGCAGTCATCAAAACTGCATTTGATCAGTATGGTACGGCGATCAGCATTCATTTCATACAGAATCACATCGAGCCAAACTACATTGGAAAGTGTGCCCTTGTTGAGTTGGAAAATGCAAAGCAAGCAAAATCAATTCTTGAGGTGTTGTCTTCGTATCCATTTATGATGTCTGGAATGCCACGACCAGTGAGGGGTCGTCCTGCAGTTCCAGAAATGTTCGATGATCGTCCGCCTAAGCCTGGTAGGAAGATACAAGTGTATTGGGTGGACCCAAAAGATCCTCAATTTGAGGTGGCTCAGAAGCTGAAGAACCTGGTAAAGCAACATGTAGCTGAACAGACCTTCCTGCAAAAGGTTTGTTAAGATCAGTAGTAACAACTAATAAGATTGTTATCATTTTCTTTAACGGGATAAATGTTGTAGTTCTTTTACACTCCCCCTTTTCTTTCAAAAGAGAAGAGAATGAATTTGCTACAAATCCTTCAGAAACAGCCTTTCTAATGATCTAGATTATAGACCTTTTGCTTTGTTGTGGTATATATTTGTTACTTCCCAGAACCTGCTAAGTGCCAATTACTTGATCCATATTTGCTTTCAAAGTTCATTCTTGATCAGATTATCATTTGGCATGTTACCTTTGCTGTTACAGAAGCAGTTGGAGGAGGAAGAGAAGCTTTCAAAGCAGCAAGCTGAGGCTCTTAAAGGGCATTATCAGAAGTACGAGATGATAGATTCTACATTAGGTGATGGAACCTCAAAGCGTCTATCTAAGTGCTACGGGGTAAATCTCAATGATGACTAAGGAATCTGACTTGAATTTTCTACAGTAAGTTAGCAGAGTAGTAGTAGACAGTAGTATGTAAATCTTAAGGTTTCGTGACTGAATCCGCTTCTTTCATAGAAAGAAACTCTTCAAGTTTATGGATTCAGGTAGTTTAACTGCGCAAGTGTATGAATCCTGCCTTTTAGACTGGTAGTTGCTTGTCCGAGCTGTCCTACAATTGCAGTTAGTTCATCTGTTAGCTCATCGTTGTATGGTTCTGTTTGCAAAAATTAATGAATGTTCAATGTGGTTCTTATTTATGACTTACGTTGACTGGATTTCAGAACAAGGAAACTATATTCCTGAGATAAATTATTTGTGTTCTGGAATTTGTATAGAAAATGTTTAGGAAACTTTTCTTTCATGCCACAAGTGTTCGTGAAACTGGCTTATATGATGTCTCTTTTTGTTTGTCGGTTAATTATGGTCTCACTACCGTCTCAGTATTCCATATCAGCCTTTATAAAATTAACTTTGCTTAGGCCTGGTTCTCTTTGCGTGATCTGAATTGTATGGTTTTGAATGTTTTTTATGAGCGTTTTTTGTTTTTTCTAGTCTGGTATGGTCAGATGGTCTGATTGACCTAATAAACAATAAGAATAAGGTATTATTTGGATGCTTTTCCTCACAGAGCTGTATAATGTTTGCTTCTCTCCCCATAGTCATACTACGAATGTTACATACCTTTTTCGGATACTCTTTTCATTTCATATTATTTGACCGCTTAACCACTTTTATTCAAAATTTTAATATTGGTTCCAAATTACCTATCCGATCATATCCATCACCAATCCAAACTAAGATCATGCTCACAATAATCTTTGGGTCAGCTCTTAACTATGTTACTAAACAAATCGGGTTATTTAAAAATAATGACATATTTAAATTAACTTGGTTAGGTAAGCAGTAAGCATAAAAGGTTTTCGAAACATTTATTAACTGATATGAACACTAAATTGGCATGACGTAACCTGTTTAGAAACTATGCGTGAAACCAATATTTCGTATTTGGGAAATGATAAATCCAAGGAAGAATTTCACATCTTCTAAGAAAATCAACTTCCCTTCGTATTTGATAAAAAGTGAGATTATAAAGGGGAATTAAGAAGCAAAAGGGACCCATAACCCAAAGAGAGAATTGAGAAGTAAGAGTATATTTTATTTCCTAATTTTGACTTATCTAAATTTATTTTAGTTTTATATTGTACTTGAAATCTTGCTAGTCTTAGAGTTGGGCATGAGTCGTGCTAGCACGTGA

mRNA sequence

ATGGTTCTGGTGGAATTATGTTATGACTGGAAATGTTCAAATCAGTATAGGATGAAGCAGATTTTCCAAGGTATTTTGGCTATGGGAAGTGAACAAGAGAAGAAGGAATATGCTGACTTTATGGAGAAGGTGAAGCGGACGGTGTACCTTGATAATCTCTCACCCCAGGTTACTGATGCAGTCATCAAAACTGCATTTGATCAGTATGGTACGGCGATCAGCATTCATTTCATACAGAATCACATCGAGCCAAACTACATTGGAAAGTGTGCCCTTGTTGAGTTGGAAAATGCAAAGCAAGCAAAATCAATTCTTGAGGTGTTGTCTTCGTATCCATTTATGATGTCTGGAATGCCACGACCAGTGAGGGGTCGTCCTGCAGTTCCAGAAATGTTCGATGATCGTCCGCCTAAGCCTGGTAGGAAGATACAAGTGTATTGGGTGGACCCAAAAGATCCTCAATTTGAGGTGGCTCAGAAGCTGAAGAACCTGGTAAAGCAACATGTAGCTGAACAGACCTTCCTGCAAAAGAAGCAGTTGGAGGAGGAAGAGAAGCTTTCAAAGCAGCAAGCTGAGGCTCTTAAAGGGCATTATCAGAAGTACGAGATGATAGATTCTACATTAGGTGATGGAACCTCAAAGCGTCTATCTAAGTGCTACGGGTTTTATATTGTACTTGAAATCTTGCTAGTCTTAGAGTTGGGCATGAGTCGTGCTAGCACGTGA

Coding sequence (CDS)

ATGGTTCTGGTGGAATTATGTTATGACTGGAAATGTTCAAATCAGTATAGGATGAAGCAGATTTTCCAAGGTATTTTGGCTATGGGAAGTGAACAAGAGAAGAAGGAATATGCTGACTTTATGGAGAAGGTGAAGCGGACGGTGTACCTTGATAATCTCTCACCCCAGGTTACTGATGCAGTCATCAAAACTGCATTTGATCAGTATGGTACGGCGATCAGCATTCATTTCATACAGAATCACATCGAGCCAAACTACATTGGAAAGTGTGCCCTTGTTGAGTTGGAAAATGCAAAGCAAGCAAAATCAATTCTTGAGGTGTTGTCTTCGTATCCATTTATGATGTCTGGAATGCCACGACCAGTGAGGGGTCGTCCTGCAGTTCCAGAAATGTTCGATGATCGTCCGCCTAAGCCTGGTAGGAAGATACAAGTGTATTGGGTGGACCCAAAAGATCCTCAATTTGAGGTGGCTCAGAAGCTGAAGAACCTGGTAAAGCAACATGTAGCTGAACAGACCTTCCTGCAAAAGAAGCAGTTGGAGGAGGAAGAGAAGCTTTCAAAGCAGCAAGCTGAGGCTCTTAAAGGGCATTATCAGAAGTACGAGATGATAGATTCTACATTAGGTGATGGAACCTCAAAGCGTCTATCTAAGTGCTACGGGTTTTATATTGTACTTGAAATCTTGCTAGTCTTAGAGTTGGGCATGAGTCGTGCTAGCACGTGA

Protein sequence

MVLVELCYDWKCSNQYRMKQIFQGILAMGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTSKRLSKCYGFYIVLEILLVLELGMSRAST
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo27236.1Spo27236.1mRNA


Homology
[Close]
BLAST of Spo27236.1 vs. NCBI nr
Match: gi|902196927|gb|KNA13266.1| (hypothetical protein SOVF_118400 [Spinacia oleracea])

HSP 1 Score: 386.0 bits (990), Expect = 5.000e-104
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

		  

Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI
Sbjct: 1   MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW
Sbjct: 61  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST
Sbjct: 121 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRLSKCYG
Sbjct: 181 LGDGTSKRLSKCYG 194
[Close]
BLAST of Spo27236.1 vs. NCBI nr
Match: gi|731335902|ref|XP_010678970.1| (PREDICTED: uncharacterized protein LOC104894441 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 300.8 bits (769), Expect = 2.100e-78
Identity = 153/194 (78.87%), Postives = 168/194 (86.60%), Query Frame = 1 

		  

Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGS+ EK EYA F  KVKRTVYLDN+SPQV D VIKTAF+QYGT   IHFIQN+IE +Y 
Sbjct: 1   MGSDTEK-EYAAFEAKVKRTVYLDNVSPQVNDTVIKTAFEQYGTVTKIHFIQNYIEQSYN 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKC LVELEN KQA+ ILEVLSSYPFMMSGMPRPVR R A PEMFDDRP KPG+KI++ W
Sbjct: 61  GKCVLVELENEKQAEGILEVLSSYPFMMSGMPRPVRARHAEPEMFDDRPSKPGKKIELVW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           + P DP FEVAQKLKNL K+H AEQ+FLQKKQLEEEEKLSKQQAEALKGHYQK+EM+DST
Sbjct: 121 LKPNDPDFEVAQKLKNLTKKHAAEQSFLQKKQLEEEEKLSKQQAEALKGHYQKFEMMDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRL+K YG
Sbjct: 181 LGDGTSKRLAKYYG 193
[Close]
BLAST of Spo27236.1 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.800e-61
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1 

		  

Query: 34  KKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALV 93
           + EYA F +KVKR VY+DN+SPQVTDAV+KTA +Q+GT +SIHFI N++EP+ I +CALV
Sbjct: 66  QNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIPRCALV 125

Query: 94  ELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDP 153
           E+    +A++I+  +++YPFMMSGMPRP R RPA  EMFDDRP KPGR+IQ  W+D +DP
Sbjct: 126 EMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDP 185

Query: 154 QFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTS 213
            FEVA+KLK+LV++H +E +F+ K QLEEEEKL+KQQAE LK +Y+KYEMIDS L DG +
Sbjct: 186 DFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAA 245

Query: 214 KRLSKCYGFYI 225
           +RL++ Y F +
Sbjct: 246 RRLARHYNFNV 256
[Close]
BLAST of Spo27236.1 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera])

HSP 1 Score: 244.6 bits (623), Expect = 1.800e-61
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1 

		  

Query: 34  KKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALV 93
           + EYA F +KVKR VY+DN+SPQVTDAV+KTA +Q+GT +SIHFI N++EP+ I +CALV
Sbjct: 6   QNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIPRCALV 65

Query: 94  ELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDP 153
           E+    +A++I+  +++YPFMMSGMPRP R RPA  EMFDDRP KPGR+IQ  W+D +DP
Sbjct: 66  EMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDP 125

Query: 154 QFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTS 213
            FEVA+KLK+LV++H +E +F+ K QLEEEEKL+KQQAE LK +Y+KYEMIDS L DG +
Sbjct: 126 DFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAA 185

Query: 214 KRLSKCYGFYI 225
           +RL++ Y F +
Sbjct: 186 RRLARHYNFNV 196
[Close]
BLAST of Spo27236.1 vs. NCBI nr
Match: gi|823242939|ref|XP_012454135.1| (PREDICTED: uncharacterized protein LOC105776164 [Gossypium raimondii])

HSP 1 Score: 238.4 bits (607), Expect = 1.300e-59
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 1 

		  

Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           ++ EYA F EKV+RTVYLDNLSP VT++V++TA DQYGT  S+ FI N++EP  + +CAL
Sbjct: 5   KQNEYAAFEEKVRRTVYLDNLSPNVTESVVRTALDQYGTVKSVEFIPNYLEPRNMPQCAL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+E  KQAK ++  LS +PFMMSGMPRPVR R AV EMF DRP KPGR+I++ W+D  D
Sbjct: 65  VEMEKEKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRIRWLDTAD 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P FEVA KLK LVK+H  E   + K QLE+EEKL+KQQ E LK +Y+KYEMIDS + DG 
Sbjct: 125 PDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLMADGA 184

Query: 213 SKRLSKCYGFYI 225
           ++RL++CY   +
Sbjct: 185 ARRLARCYNLRV 196
[Close]
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R166_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118400 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 3.500e-104
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1 

		  

Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI
Sbjct: 1   MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW
Sbjct: 61  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST
Sbjct: 121 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRLSKCYG
Sbjct: 181 LGDGTSKRLSKCYG 194
[Close]
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDP0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118610 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.500e-78
Identity = 153/194 (78.87%), Postives = 168/194 (86.60%), Query Frame = 1 

		  

Query: 28  MGSEQEKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYI 87
           MGS+ EK EYA F  KVKRTVYLDN+SPQV D VIKTAF+QYGT   IHFIQN+IE +Y 
Sbjct: 1   MGSDTEK-EYAAFEAKVKRTVYLDNVSPQVNDTVIKTAFEQYGTVTKIHFIQNYIEQSYN 60

Query: 88  GKCALVELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYW 147
           GKC LVELEN KQA+ ILEVLSSYPFMMSGMPRPVR R A PEMFDDRP KPG+KI++ W
Sbjct: 61  GKCVLVELENEKQAEGILEVLSSYPFMMSGMPRPVRARHAEPEMFDDRPSKPGKKIELVW 120

Query: 148 VDPKDPQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDST 207
           + P DP FEVAQKLKNL K+H AEQ+FLQKKQLEEEEKLSKQQAEALKGHYQK+EM+DST
Sbjct: 121 LKPNDPDFEVAQKLKNLTKKHAAEQSFLQKKQLEEEEKLSKQQAEALKGHYQKFEMMDST 180

Query: 208 LGDGTSKRLSKCYG 222
           LGDGTSKRL+K YG
Sbjct: 181 LGDGTSKRLAKYYG 193
[Close]
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.200e-61
Identity = 117/191 (61.26%), Postives = 155/191 (81.15%), Query Frame = 1 

		  

Query: 34  KKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCALV 93
           + EYA F +KVKR VY+DN+SPQVTDAV+KTA +Q+GT +SIHFI N++EP+ I +CALV
Sbjct: 66  QNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIPRCALV 125

Query: 94  ELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKDP 153
           E+    +A++I+  +++YPFMMSGMPRP R RPA  EMFDDRP KPGR+IQ  W+D +DP
Sbjct: 126 EMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWLDKEDP 185

Query: 154 QFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGTS 213
            FEVA+KLK+LV++H +E +F+ K QLEEEEKL+KQQAE LK +Y+KYEMIDS L DG +
Sbjct: 186 DFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVLADGAA 245

Query: 214 KRLSKCYGFYI 225
           +RL++ Y F +
Sbjct: 246 RRLARHYNFNV 256
[Close]
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0B0ML97_GOSAR (Putative RNA-binding rbpD OS=Gossypium arboreum GN=F383_19124 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.900e-60
Identity = 114/192 (59.38%), Postives = 147/192 (76.56%), Query Frame = 1 

		  

Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           ++ EYA F EKV+RTVYLDNLSP VT+++++TA DQYGT  S+ FI N++EP  + +CAL
Sbjct: 5   KQNEYAAFEEKVRRTVYLDNLSPNVTESIVRTALDQYGTVKSVEFIPNYLEPRNMPQCAL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+E  KQAK ++  LS +PFMMSGMPRPVR R AV EMF DRP KPGR+I++ W+D  D
Sbjct: 65  VEMEKGKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRICWLDTAD 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P FEVA KLK LVK+H  E   + K QLE+EEKL+KQQ E LK +Y+KYEMIDS + DG 
Sbjct: 125 PDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLMADGA 184

Query: 213 SKRLSKCYGFYI 225
           ++RL++CY   +
Sbjct: 185 ARRLARCYNLRV 196
[Close]
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Match: A0A0D2UT21_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142700 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.900e-60
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 1 

		  

Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           ++ EYA F EKV+RTVYLDNLSP VT++V++TA DQYGT  S+ FI N++EP  + +CAL
Sbjct: 5   KQNEYAAFEEKVRRTVYLDNLSPNVTESVVRTALDQYGTVKSVEFIPNYLEPRNMPQCAL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+E  KQAK ++  LS +PFMMSGMPRPVR R AV EMF DRP KPGR+I++ W+D  D
Sbjct: 65  VEMEKEKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRIRWLDTAD 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P FEVA KLK LVK+H  E   + K QLE+EEKL+KQQ E LK +Y+KYEMIDS + DG 
Sbjct: 125 PDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLMADGA 184

Query: 213 SKRLSKCYGFYI 225
           ++RL++CY   +
Sbjct: 185 ARRLARCYNLRV 196
[Close]
BLAST of Spo27236.1 vs. TAIR (Arabidopsis)
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.900e-45
Identity = 87/188 (46.28%), Postives = 129/188 (68.62%), Query Frame = 1 

		  

Query: 33  EKKEYADFMEKVKRTVYLDNLSPQVTDAVIKTAFDQYGTAISIHFIQNHIEPNYIGKCAL 92
           E+  Y  F+E+V+RTVY+D L+P  T  VI +AF+Q+GT   + FI N++ P  +    L
Sbjct: 5   EEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELPMGVL 64

Query: 93  VELENAKQAKSILEVLSSYPFMMSGMPRPVRGRPAVPEMFDDRPPKPGRKIQVYWVDPKD 152
           VE+EN +  ++++  +S  PFM++GMPRPVR   A P MF D+P KPGR ++  W+ P D
Sbjct: 65  VEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWIKPND 124

Query: 153 PQFEVAQKLKNLVKQHVAEQTFLQKKQLEEEEKLSKQQAEALKGHYQKYEMIDSTLGDGT 212
           P F+ A+++K L ++H AE +F+ KKQLEE EKLSKQQAE    H++K+EM+D  L DG 
Sbjct: 125 PDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLLYDGV 184

Query: 213 SKRLSKCY 221
           +++L+  Y
Sbjct: 185 AQKLAGRY 192
The following BLAST results are available for this feature:
BLAST of Spo27236.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902196927|gb|KNA13266.1|5.0e-104100.hypothetical protein SOVF_1184... [more]
gi|731335902|ref|XP_010678970.1|2.1e-7878.8PREDICTED: uncharacterized pro... [more]
gi|296082652|emb|CBI21657.3|1.8e-6161.2unnamed protein product [Vitis... [more]
gi|225438281|ref|XP_002269083.1|1.8e-6161.2PREDICTED: uncharacterized pro... [more]
gi|823242939|ref|XP_012454135.1|1.3e-5959.9PREDICTED: uncharacterized pro... [more]
back to top
BLAST of Spo27236.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R166_SPIOL3.5e-104100.Uncharacterized protein OS=Spi... [more]
A0A0J8CDP0_BETVU1.5e-7878.8Uncharacterized protein OS=Bet... [more]
D7SWK8_VITVI1.2e-6161.2Putative uncharacterized prote... [more]
A0A0B0ML97_GOSAR8.9e-6059.3Putative RNA-binding rbpD OS=G... [more]
A0A0D2UT21_GOSRA8.9e-6059.9Uncharacterized protein OS=Gos... [more]
back to top
BLAST of Spo27236.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo27236.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G05970.21.9e-4546.2RNA-binding (RRM/RBD/RNP motif... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 48..113
score: 5.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 46..150
score: 10
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 38..156
score: 9.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 43..119
score: 5.64
NoneNo IPR availableunknownCoilCoilcoord: 177..197
scor
NoneNo IPR availablePANTHERPTHR36309FAMILY NOT NAMEDcoord: 31..234
score: 8.6
NoneNo IPR availablePANTHERPTHR36309:SF1SUBFAMILY NOT NAMEDcoord: 31..234
score: 8.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0008361 regulation of cell size
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0048481 plant ovule development
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0070932 histone H3 deacetylation
biological_process GO:0061647 histone H3-K9 modification
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0070933 histone H4 deacetylation
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0016311 dephosphorylation
biological_process GO:0009926 auxin polar transport
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0048767 root hair elongation
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009932 cell tip growth
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0019509 L-methionine salvage from methylthioadenosine
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006306 DNA methylation
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0006285 base-excision repair, AP site formation
biological_process GO:0010731 protein glutathionylation
biological_process GO:0010351 lithium ion transport
biological_process GO:0019284 L-methionine salvage from S-adenosylmethionine
biological_process GO:0006869 lipid transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0010583 response to cyclopentenone
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0051604 protein maturation
biological_process GO:0007034 vacuolar transport
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0009636 response to toxic substance
biological_process GO:0009407 toxin catabolic process
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0048653 anther development
biological_process GO:0001510 RNA methylation
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009853 photorespiration
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006508 proteolysis
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0016049 cell growth
biological_process GO:0043900 regulation of multi-organism process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010200 response to chitin
biological_process GO:0009409 response to cold
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0006364 rRNA processing
biological_process GO:0009058 biosynthetic process
biological_process GO:0016043 cellular component organization
biological_process GO:0010817 regulation of hormone levels
biological_process GO:0006810 transport
biological_process GO:0015979 photosynthesis
biological_process GO:0009733 response to auxin
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0008152 metabolic process
biological_process GO:0050832 defense response to fungus
biological_process GO:0048869 cellular developmental process
biological_process GO:0010015 root morphogenesis
biological_process GO:0044238 primary metabolic process
biological_process GO:0009595 detection of biotic stimulus
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0000165 MAPK cascade
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0060560 developmental growth involved in morphogenesis
biological_process GO:0009697 salicylic acid biosynthetic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030904 retromer complex
cellular_component GO:0005773 vacuole
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0000118 histone deacetylase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005829 cytosol
cellular_component GO:0009317 acetyl-CoA carboxylase complex
molecular_function GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific)
molecular_function GO:0043916 DNA-7-methylguanine glycosylase activity
molecular_function GO:0052821 DNA-7-methyladenine glycosylase activity
molecular_function GO:0045174 glutathione dehydrogenase (ascorbate) activity
molecular_function GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific)
molecular_function GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific)
molecular_function GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function GO:0004364 glutathione transferase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0052822 DNA-3-methylguanine glycosylase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003989 acetyl-CoA carboxylase activity
molecular_function GO:0009374 biotin binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008725 DNA-3-methyladenine glycosylase activity
molecular_function GO:0031071 cysteine desulfurase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0043715 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity
molecular_function GO:0043716 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity
molecular_function GO:0043874 acireductone synthase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0046570 methylthioribulose 1-phosphate dehydratase activity
molecular_function GO:0005094 Rho GDP-dissociation inhibitor activity
molecular_function GO:0052692 raffinose alpha-galactosidase activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0004518 nuclease activity
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo108200.83Barchart | Table
Spo084970.79Barchart | Table
Spo255030.79Barchart | Table
Spo094690.78Barchart | Table
Spo230670.78Barchart | Table
Spo043870.76Barchart | Table
Spo159840.76Barchart | Table
Spo156080.76Barchart | Table
Spo067180.75Barchart | Table
Spo005380.75Barchart | Table
Spo116290.75Barchart | Table
Spo108170.75Barchart | Table
Spo217160.73Barchart | Table
Spo049590.73Barchart | Table
Spo238740.73Barchart | Table
Spo152440.73Barchart | Table
Spo248670.72Barchart | Table
Spo032130.72Barchart | Table
Spo040370.72Barchart | Table
Spo181430.72Barchart | Table
Spo007540.71Barchart | Table
Spo093210.71Barchart | Table
Spo263130.71Barchart | Table
Spo150920.70Barchart | Table
Spo019670.70Barchart | Table
Spo259950.70Barchart | Table
Spo094600.69Barchart | Table
Spo069360.69Barchart | Table
Spo116820.69Barchart | Table
Spo178840.69Barchart | Table
Spo231860.69Barchart | Table
Spo243070.69Barchart | Table
Spo250750.69Barchart | Table
Spo251750.69Barchart | Table
Spo237090.68Barchart | Table
Spo030060.68Barchart | Table
Spo058100.68Barchart | Table
Spo065080.68Barchart | Table
Spo066970.68Barchart | Table
Spo049700.68Barchart | Table
Spo131210.68Barchart | Table
Spo163920.68Barchart | Table
Spo110560.67Barchart | Table
Spo236570.67Barchart | Table
Spo123790.67Barchart | Table
Spo113360.67Barchart | Table
Spo168930.67Barchart | Table
Spo269070.67Barchart | Table
Spo225860.66Barchart | Table
Spo054980.66Barchart | Table
Spo214120.65Barchart | Table
Spo199660.65Barchart | Table