Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGGTTATAAATTCAAATAGCGCAACCGTTATATTAAAAGTTTTACATTCCGTGATAATCTTACAAGTATATAGAAGGGAATTTTTTTCCAACATTTATTTGATGTAAGAAAAATAAAAAAATAAAAATAAAAATAATAATAATAATAATTCAGCTTATCTGACAGCCCTGTTATCTTATCATGTCCCCTTCTTCCATCCCCGTTATCTCTCTCCCCAAGTAATTTTCTTTCTTTTTTTTCTCTTTGATCTATCCTTCCTTATAAAAACCTCCCATAAAATTATCTTCATTTTAATTTATTAAATCCCTTCGTACGGATTTTTATCTTTCTCTCTCTATAGATTCCTTCAAAACCTCACCCCCACTCACTCCAAAAAAACAAACAACCCCTTATTTTCCCACTTCCTCTCTCCATCCATCAATCTATCACATTCTCTCTCCTCCTCCTCCTCCTCCTCAGCGACGACTTTTTTCGGCGATCGAGTGAAGAACATGGCGAAGGAGGATGCCACGGCGGGGACTGATGGTGGGTTTATGTTGTTCGGTGTTCGTGTGGTGACTGAATCCATGAGGAAGAGTGTTTCTCTTAATAATCTCTCTCAGTATGAACATCGCCTAGACTCTTCTTCCTCTAACGACGTTGTTCCTGCTGTTACTGCTGGTTACGCTTCCGCCGATGATGCTGTCGTCGCGAATCGTTCTTCCACCACCGCTGCTGGTGTTAGCCGCGAGCGCAAGCGAGGTAGGAGAGGATATCACTTATTTTTTTCGAAAGAAAAAATTGAATAAATCTGTTATTGATTTTGTTGATTGATTTGTGATTATATAGGGGTTCCATGGACGGAGGATGAACACAAACTGTTTCTGCAAGGGTTACAGAAGGTAGGCAAAGGAGATTGGCGAGGAATCTCTAGAAACTTCGTCAAAACACGAACGCCAACGCAAGTTGCGAGTCACGCTCAGAAGTATTTCCTTCGACGAAGCAATCTGAACCGTCGTCGTCGTAGATCTAGCCTCTTCGACATCACCACTGATACGGTAATTTTCTCTCTCCTAAAAATGTTCAATAATCCGATGACAAAGTATCAAAATCGATTTGAGATTTCTGATTTTTTTTATATATATTTATTTCTGGATTAGGTTACTAATCAATCAAATGATCAACAAGTCGTGATCAACAAGGAAAACAACAACGGAGGCTCTCAATCTCCACAACAACAATCATCGAATTCAGAGATCTCGAATTTGAGATTTTCATCAACTGCAGCTCCGATCTATCCATTAACGACATCATTCGGTCATCTACCTCCTCAAGTAGTAGTTGATCATGAGATGAAGGCAGTTGAGGGACCAGTTTCAGCGAGCAGCAGCAGCAAATCAATGGTGGATTTCGATCTAAACCAGAATGACTCATCATCTTTATCCCTGTCACTTTCTCTCTCCATGACTGCATCGGATCTCGCAAATTCGAGGTATCCAGCGTTTCAGCTTATGCAAGGGTTCAACAATGGTGATAGTATCATCAGAGTGGCTTAAAACGGAAGATGCTTATTGGATTTGATCATAATCAATCAATTAATCAAAATAATATCTGAAAAATTAAGAGGATGAAATATTTTTCAGCTTGAGAAAAACAAATTGAGTATTAATTAGTAGGTTTTTGGAATTTGGATGGATAAGTGTATTACTATGATAAGTAATTAATTATGATTTAAGCTAATTAAGGGGATGTAGTTCTAATTCTGATATCGAAACTCTTTAACTTTTTTTTTAAAAAAATTCGCCATATTTTTGTTATTTTGTTGTCGTTGGTGGTTTTATGTACAGACTGTAAGGGTGTGATGTTGCTTGGCTTGTTTGATAATCTTTTGTTTTGTTTGCTGGCAAATGGCAAATTAGCAATGGATGGATCTCTTTCAAAGGATAAATTATTAAATACAGTAATTAATTGGATTTACTACTTGTATTTACTAGTGGATAAAAATGTTTCTCATCTCATATCTGTATGCATCTATGTGTGAATATGAAGTATGATTGATCGTTTACTTATATTGCAATAATCTGATTTTACCTGTTATTTTGAATATTTGTATTTATTTCATCATATTAATAGTCTTAATTTTAAGGAGC AAGGGTTATAAATTCAAATAGCGCAACCGTTATATTAAAAGTTTTACATTCCGTGATAATCTTACAAGTATATAGAAGGGAATTTTTTTCCAACATTTATTTGATGTAAGAAAAATAAAAAAATAAAAATAAAAATAATAATAATAATAATTCAGCTTATCTGACAGCCCTGTTATCTTATCATGTCCCCTTCTTCCATCCCCGTTATCTCTCTCCCCAAGTAATTTTCTTTCTTTTTTTTCTCTTTGATCTATCCTTCCTTATAAAAACCTCCCATAAAATTATCTTCATTTTAATTTATTAAATCCCTTCGTACGGATTTTTATCTTTCTCTCTCTATAGATTCCTTCAAAACCTCACCCCCACTCACTCCAAAAAAACAAACAACCCCTTATTTTCCCACTTCCTCTCTCCATCCATCAATCTATCACATTCTCTCTCCTCCTCCTCCTCCTCCTCAGCGACGACTTTTTTCGGCGATCGAGTGAAGAACATGGCGAAGGAGGATGCCACGGCGGGGACTGATGGTGGGTTTATGTTGTTCGGTGTTCGTGTGGTGACTGAATCCATGAGGAAGAGTGTTTCTCTTAATAATCTCTCTCAGTATGAACATCGCCTAGACTCTTCTTCCTCTAACGACGTTGTTCCTGCTGTTACTGCTGGTTACGCTTCCGCCGATGATGCTGTCGTCGCGAATCGTTCTTCCACCACCGCTGCTGGTGTTAGCCGCGAGCGCAAGCGAGGGGTTCCATGGACGGAGGATGAACACAAACTGTTTCTGCAAGGGTTACAGAAGGTAGGCAAAGGAGATTGGCGAGGAATCTCTAGAAACTTCGTCAAAACACGAACGCCAACGCAAGTTGCGAGTCACGCTCAGAAGTATTTCCTTCGACGAAGCAATCTGAACCGTCGTCGTCGTAGATCTAGCCTCTTCGACATCACCACTGATACGGTTACTAATCAATCAAATGATCAACAAGTCGTGATCAACAAGGAAAACAACAACGGAGGCTCTCAATCTCCACAACAACAATCATCGAATTCAGAGATCTCGAATTTGAGATTTTCATCAACTGCAGCTCCGATCTATCCATTAACGACATCATTCGGTCATCTACCTCCTCAAGTAGTAGTTGATCATGAGATGAAGGCAGTTGAGGGACCAGTTTCAGCGAGCAGCAGCAGCAAATCAATGGTGGATTTCGATCTAAACCAGAATGACTCATCATCTTTATCCCTGTCACTTTCTCTCTCCATGACTGCATCGGATCTCGCAAATTCGAGGTATCCAGCGTTTCAGCTTATGCAAGGGTTCAACAATGGTGATAGTATCATCAGAGTGGCTTAAAACGGAAGATGCTTATTGGATTTGATCATAATCAATCAATTAATCAAAATAATATCTGAAAAATTAAGAGGATGAAATATTTTTCAGCTTGAGAAAAACAAATTGAGTATTAATTAGTAGGTTTTTGGAATTTGGATGGATAAGTGTATTACTATGATAAGTAATTAATTATGATTTAAGCTAATTAAGGGGATGTAGTTCTAATTCTGATATCGAAACTCTTTAACTTTTTTTTTAAAAAAATTCGCCATATTTTTGTTATTTTGTTGTCGTTGGTGGTTTTATGTACAGACTGTAAGGGTGTGATGTTGCTTGGCTTGTTTGATAATCTTTTGTTTTGTTTGCTGGCAAATGGCAAATTAGCAATGGATGGATCTCTTTCAAAGGATAAATTATTAAATACAGTAATTAATTGGATTTACTACTTGTATTTACTAGTGGATAAAAATGTTTCTCATCTCATATCTGTATGCATCTATGTGTGAATATGAAGTATGATTGATCGTTTACTTATATTGCAATAATCTGATTTTACCTGTTATTTTGAATATTTGTATTTATTTCATCATATTAATAGTCTTAATTTTAAGGAGC ATGGCGAAGGAGGATGCCACGGCGGGGACTGATGGTGGGTTTATGTTGTTCGGTGTTCGTGTGGTGACTGAATCCATGAGGAAGAGTGTTTCTCTTAATAATCTCTCTCAGTATGAACATCGCCTAGACTCTTCTTCCTCTAACGACGTTGTTCCTGCTGTTACTGCTGGTTACGCTTCCGCCGATGATGCTGTCGTCGCGAATCGTTCTTCCACCACCGCTGCTGGTGTTAGCCGCGAGCGCAAGCGAGGGGTTCCATGGACGGAGGATGAACACAAACTGTTTCTGCAAGGGTTACAGAAGGTAGGCAAAGGAGATTGGCGAGGAATCTCTAGAAACTTCGTCAAAACACGAACGCCAACGCAAGTTGCGAGTCACGCTCAGAAGTATTTCCTTCGACGAAGCAATCTGAACCGTCGTCGTCGTAGATCTAGCCTCTTCGACATCACCACTGATACGGTTACTAATCAATCAAATGATCAACAAGTCGTGATCAACAAGGAAAACAACAACGGAGGCTCTCAATCTCCACAACAACAATCATCGAATTCAGAGATCTCGAATTTGAGATTTTCATCAACTGCAGCTCCGATCTATCCATTAACGACATCATTCGGTCATCTACCTCCTCAAGTAGTAGTTGATCATGAGATGAAGGCAGTTGAGGGACCAGTTTCAGCGAGCAGCAGCAGCAAATCAATGGTGGATTTCGATCTAAACCAGAATGACTCATCATCTTTATCCCTGTCACTTTCTCTCTCCATGACTGCATCGGATCTCGCAAATTCGAGGTATCCAGCGTTTCAGCTTATGCAAGGGTTCAACAATGGTGATAGTATCATCAGAGTGGCTTAA MAKEDATAGTDGGFMLFGVRVVTESMRKSVSLNNLSQYEHRLDSSSSNDVVPAVTAGYASADDAVVANRSSTTAAGVSRERKRGVPWTEDEHKLFLQGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVTNQSNDQQVVINKENNNGGSQSPQQQSSNSEISNLRFSSTAAPIYPLTTSFGHLPPQVVVDHEMKAVEGPVSASSSSKSMVDFDLNQNDSSSLSLSLSLSMTASDLANSRYPAFQLMQGFNNGDSIIRVA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo27289.1 vs. NCBI nr
Match: gi|902194303|gb|KNA12515.1| (hypothetical protein SOVF_125190 [Spinacia oleracea]) HSP 1 Score: 534.6 bits (1376), Expect = 1.000e-148 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1
BLAST of Spo27289.1 vs. NCBI nr
Match: gi|731335286|ref|XP_010678650.1| (PREDICTED: transcription factor MYB1R1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 350.1 bits (897), Expect = 3.600e-93 Identity = 208/288 (72.22%), Postives = 227/288 (78.82%), Query Frame = 1
BLAST of Spo27289.1 vs. NCBI nr
Match: gi|698527639|ref|XP_009760664.1| (PREDICTED: transcription factor MYB1R1-like [Nicotiana sylvestris]) HSP 1 Score: 238.8 bits (608), Expect = 1.200e-59 Identity = 157/298 (52.68%), Postives = 193/298 (64.77%), Query Frame = 1
BLAST of Spo27289.1 vs. NCBI nr
Match: gi|254679865|gb|ACT78579.1| (isoflavonoid regulator [Glycine max]) HSP 1 Score: 225.7 bits (574), Expect = 1.000e-55 Identity = 151/290 (52.07%), Postives = 186/290 (64.14%), Query Frame = 1
BLAST of Spo27289.1 vs. NCBI nr
Match: gi|697102106|ref|XP_009599323.1| (PREDICTED: transcription factor MYB1R1-like [Nicotiana tomentosiformis]) HSP 1 Score: 225.7 bits (574), Expect = 1.000e-55 Identity = 149/294 (50.68%), Postives = 189/294 (64.29%), Query Frame = 1
BLAST of Spo27289.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZ30_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125190 PE=4 SV=1) HSP 1 Score: 534.6 bits (1376), Expect = 7.100e-149 Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1
BLAST of Spo27289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEP2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115930 PE=4 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 2.500e-93 Identity = 208/288 (72.22%), Postives = 227/288 (78.82%), Query Frame = 1
BLAST of Spo27289.1 vs. UniProtKB/TrEMBL
Match: D8L1Z5_SOYBN (Isoflavonoid regulator OS=Glycine max GN=MYB176 PE=2 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 7.100e-56 Identity = 151/290 (52.07%), Postives = 186/290 (64.14%), Query Frame = 1
BLAST of Spo27289.1 vs. UniProtKB/TrEMBL
Match: A7UMB2_ROSHC (Myb transcription factor OS=Rosa hybrid cultivar GN=myb PE=2 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 2.100e-55 Identity = 149/300 (49.67%), Postives = 186/300 (62.00%), Query Frame = 1
BLAST of Spo27289.1 vs. UniProtKB/TrEMBL
Match: Q0PJH8_SOYBN (MYB transcription factor MYB176 OS=Glycine max GN=MYB176 PE=2 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 3.500e-55 Identity = 150/290 (51.72%), Postives = 185/290 (63.79%), Query Frame = 1
BLAST of Spo27289.1 vs. ExPASy Swiss-Prot
Match: MY1R1_SOLTU (Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 5.500e-54 Identity = 149/295 (50.51%), Postives = 180/295 (61.02%), Query Frame = 1
BLAST of Spo27289.1 vs. ExPASy Swiss-Prot
Match: DIV_ANTMA (Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.200e-24 Identity = 67/124 (54.03%), Postives = 85/124 (68.55%), Query Frame = 1
BLAST of Spo27289.1 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 2.100e-8 Identity = 67/261 (25.67%), Postives = 110/261 (42.15%), Query Frame = 1
BLAST of Spo27289.1 vs. ExPASy Swiss-Prot
Match: MYBH_DICDI (Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 3.900e-7 Identity = 35/128 (27.34%), Postives = 63/128 (49.22%), Query Frame = 1
BLAST of Spo27289.1 vs. ExPASy Swiss-Prot
Match: MYBI_DICDI (Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 6.600e-7 Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 1
BLAST of Spo27289.1 vs. TAIR (Arabidopsis)
Match: AT1G19000.1 (Homeodomain-like superfamily protein) HSP 1 Score: 191.4 bits (485), Expect = 7.500e-49 Identity = 135/291 (46.39%), Postives = 168/291 (57.73%), Query Frame = 1
BLAST of Spo27289.1 vs. TAIR (Arabidopsis)
Match: AT1G74840.1 (Homeodomain-like superfamily protein) HSP 1 Score: 186.4 bits (472), Expect = 2.400e-47 Identity = 130/272 (47.79%), Postives = 163/272 (59.93%), Query Frame = 1
BLAST of Spo27289.1 vs. TAIR (Arabidopsis)
Match: AT1G70000.1 (myb-like transcription factor family protein) HSP 1 Score: 169.1 bits (427), Expect = 4.000e-42 Identity = 97/156 (62.18%), Postives = 112/156 (71.79%), Query Frame = 1
BLAST of Spo27289.1 vs. TAIR (Arabidopsis)
Match: AT5G47390.1 (myb-like transcription factor family protein) HSP 1 Score: 142.9 bits (359), Expect = 3.000e-34 Identity = 97/193 (50.26%), Postives = 122/193 (63.21%), Query Frame = 1
BLAST of Spo27289.1 vs. TAIR (Arabidopsis)
Match: AT3G16350.1 (Homeodomain-like superfamily protein) HSP 1 Score: 130.6 bits (327), Expect = 1.600e-30 Identity = 91/208 (43.75%), Postives = 120/208 (57.69%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27289.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27289.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27289.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo27289.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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