Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCGAAAAACATCTCAAGAGGCGTTTTTTTTATAATATTCATACGTAAAAGGGTTTTGATGTCAATTACGCTAACTTAAAGGGTGTTTTAGGAATAAAAACGCATTAAACTGGAGTTTTAGCTAGATTAAAAGATGATCATTACTTCATTTACAAAGGCTAACTAGTTAAAAGAACAATATACTAAAAATTCTTGGGTTCTTCTAAGCATGCAACACATGTCCTTGAAGTCTCAATCACAACCACCACACTACAAATCACTCCATGAGTTCTTTAGGTGCACCTTAACTTTTTCCATGAGAGTTCATACCTCAAAATACATTATCTTTTTTAGAAGCCATATTTTATTTATTTAATTATGACAATATAAATATATAATCCAATTATCCACCTTCCAAAAAAAGACAATGATTCCATCACATGACTAAACAAATTAAGCAACTCTTTTCCTCCACTAAACTTTTCTCCCCACTAAATTCCAAACTCTAAATTTCCTTCAAAATTTCCTCACATTTTATAAGCCCTTTTTACACTTACATTGTTCATATTCTTCAATTTCTCAGCCATGAATAATACTAGCTCAAACAAAACAATTCCAAGATTAAAACTTTTGGATTTCTCCCTTAGAATCTCTGTTATTCCACTAAGTATTGCTTCTTTATGCTTAACTATTGGCACTAATGAAGATAATCCTGATTATGGAAGCATTAAGTTCCTGAATTTCTCAGGCCTCAAGTAATTTTATTAATGTTTAATTTTTATTCAATTATTGGGTTAATTAATTTGTTAAATAAGAAATTTAATTTGGTTGTTTGTTTGTTTTGTGGAAGGTATATGGTTGCTGTTGCTGCCATTGCTGCTGGGTATGGTGTTGTTGCTGCAATCTCAACTTGGATTCCTTGCTTAGTTAACAAAGCTTGGCTTTTCTTTGTCTCTGATCAGGTTTGTTTCTTTATTAATCATTATTTCTGGGTTTCCTCGATTTTTTTCGAAAAATTAGCAAATGGTGAATAATGTAGAACCGTTGTTGCGAAATTAAGTTAGCTTAGGGCCCTGTTCTGTTCACTTTATTTTCACTTATTTCAGAAAAATAAGTTCAGATAAGTTCATATAAGATAAGTTCAGGAAAAATAAGGGTTGACTAAATATAATTTATAACTAAAATAAGTTTTGATATGTTCTAATAAGTTGATAAGTTCAGATAAATTCAGTTAAGTTCGGATAAGATAATTTCAGGAAAAATAAGTAAAAATCAGGTGAATAGAACACAACCTTAGTCTTTTAGGACCCCGTGCTTAAGAAATGCTTCATTCGTTCCTAAAAGATTGACTATTGTAATTTGTTCGGTCAACTTTAAAAACTTTGACCAAGAATTCTCATTAGCGTTTTTGTTTAAGATGCAACCAAGGAACTTCAATAATTAAAGAGTTTAAAGTCATTTGAGGTTTGTTTCATTCGTTTCAAAGTTTTATAATTTTTGGTTTTTATACATGGTATCCCTGTAGTTCGTTGATTTCTATATTATAAACGTTTTAAATTTTACACATTGTACCCTTATAATTGCAAAAGTTAATCACTTTTATCTTTGTTGCCAACCGATGTTAACAAGTTCCATTGTATTTTTTAAGTTCAAGATTTTTTTACATTATCGTTGGGTCAACGACAAACACAAGGTTGATAATAATATAGAAAAACCTTAGTTTGTTTAAAAAGCTACGGGATTTTTAAACGCTGGATTAACAACAAGGATAACGTTGACTAGATTTTTCAAGTACAAGGGTACACCATGGAAGATTTTAAATGCATGTGTACAACGTAGAAATCAATGCAATATAGGGTACAATGTATAAAAATCCTATAATTTTTCAATGTAGAAATATTTACGTTTTAAGTCGTATTTTGGAGATCGTGAAGTCAAATGGGGCAATCTTTCAGTTATTAAGGGTGTAAAGAATTGTAACAAACTAGTGAGCTTACTAAGGGCGTGTTCGGCGGTAGCGTTTGAGGTAGCGGGTAGCGTTTTGACCTAGTCAAGACGCTACTTGTAAAATTTGTAAGTGTTTGGTAAAGTAGCGATTTAGGTAGAGGTTAGCGGTTGAGGTAGCGGTTGGGTAGCTTTTGTCAAACGTTAAAATTAGTAGCGTTTAAGGTAGCGGGTAGCGTTTGACAAATTTATAATAAAGTTTTAAATAATATTCTTGCTTTTATTTTTATTTTTATAATATCAACCGCTACTTTTACCGAACACTCATATTAGTTACCGCTACTTTGACAGCTAACCGTTACCCGCTACTATTCACCGCTACTCGCTACTTTAACCGCTACCTGCTACTCAACCGCTAACCGCTACCCGCTACCGCTAATTTTGCCGAACAGGGCCTAATTATTGTTTTTATGAAGTATTGTAGTAGTACTCCGTACTAATTAGGTGCATTTGAGAGTGGATAGTAGAGATCGAGCTCATGTATTCGAGTGATGTGACAACCATTTAAGAGTTCAAACAAAGAGTCAAACTTATACAGTTATACCTGTATATAGAGGACAACATTGTAATAACAAACGCATTTTCTCAAGTGTACCTAATATTCTAATAATCGCTCAATGTTCTGTTAACAGAATAATCCCTCGTGAGGGTGAGATTATCCTTAAGACTCACCTCCAATCTTAAGACTCTGTCACATCAGTTTCTCATTATTTAGAGTCACACAAAACTCTCCCTATTTTTACACATTATCCACAGACTTACACCATACTCAACTAAACTCCTAAAAAAAGATAATTAAATAGAATAAAGTATGATGACGTGGTATAATTTGATTTGGTTGGAGAAAAAATAGAGTCTTAAGTGAGTTTTGATCGAGTCTTGGATTTTCAAACTAAGTTCAAGACTTGTTGTACTCTTTTACCCTGTTATCCCAAGACTTAGACTTGAGACTCACCTTAAGACTTGGGATAAACTCACCTTCAATAACTGGAAATACTCAAGTTTCTACTTGCCATATGAGCTTGAAAATAAACGGACTCCTAGGATTTATGCGTTCTCGTGAACCCAAATTGAAAGAACACTATATATATATGAAACATAGAATTTAAAAATTGTTATTCACACTCCCCGTAGTCAACCCCAAATAGAAAGAACACTATGGGGGTGTTTGGTTATGAGAGGTTTGTGGGGAAAAGAGATTTTTGGGGTGAATTAGAGATTTGACCTTTAGAAAAAGCTAATTGAGAGTGTTTGGTTAGAAGAGGATTGGAAGAGAGTTTTTGGTTGTAAAAGCTAATTTTGAAAAAGCTTAATATAGGAGCTCTTGTAATTAGAGGTTTGAGAAAGTGGATGAAAATGACTATTTTGTCCTACTATTGCCTATAAGTACTACCACTATCAACCTTGGTACCCTATATATTATTCTCCTAAAAACATTACTCACACTTTCTTTTTCATTTCACCCTATTTACTAGATTCGTTTTTTGTTGTAATAAATTTTATATTAATACCTTTAAGCAATTGAATTATATTGCAATCATGCTTAAAATATTACTAGTAATATATCTTTAATTGAAAATTATATATAATTTTTTAATTTAAATTAAGAATATTTTTTTTTAAAAAAAATAAATTTATTTTATTTAGTCAATGTTTATTAGAAAAATATAAAGAGAAAAAAATTAAAACAATAAATTGTCCAATATTAATAAGAAACAAAGTATGTCAATGTCCTTAATGGTCATTTTACATATTAAACAGCTAACAGCTATCAGCTAATTTACCAAATACTTTTACACAACCAGGTAGTCAAATCAGCTAATGCAAAACAGCTAACCGCTAACAGCTAGTCAAACCAGCTATCAGCTAACAGCTCATAACCAAACAGGGCCTATATAGTGAAGTACTCGGTATATAGGCAACATAAAGTTTAAAAATTGCTATTCACACACACTCCTTATAAGCTGCGAAAACACCCTGTTGTGATAGAATGCAATAGAAATTGGCAAATCGCACATCACAAGGAGTTTAAGAAGCAATATTAGGGAACTACTCCGTATATTATTGATGGAAGTGTGGATTGGTAGGTAAATACTCCATAAGTTAAGGTTGTAGATTGACTGTTTGCAATTAGTTATGGTATTGAATTAATTAATGGGGTTGGTTGGTTGGAAAAATTCAGGTGATGGCGTACTTAATGTTGACATCAGAGGCAGCAGGAGCAGAGTTAATGTATTTGGCATACAAAGGTGATGTTGATGTTGCATGGAGTGAAGCCTGCACTGCATATCCACATTTCTGCACTAATCTCAAACTTGCTCTTCTTCTTCATTTCTTAGCTCTCTTTTGCTTCCTTTTTTTGGCTCTCATCTCTGCTTTTAGGGCTTTCTCCATGTTTGATCCCCCGTTTTCGCCCGATCGATCAACAGGACTTAATTAATAATTAATAATTAATAGCTACATTGATCTCAACTAATCACGTACTTACAGAATACGGAGTAGTAGTGATACATTTTGAGCTGATTCACATTGTAATCTTTTGTTAAATGATCAAGGTTTGATCCAGTTTGTGATTAGCAAGCATTTAGCTCAGATTGTAATTAATTTCGACATCTTTATTGTAACTAATAGAAGTGGACCTACTAGCTGGGCTAGTGTGTGCTTTGGGCTTGGGAGTGCTTGTGGGTGGGCTATTAATATTTTAATTAAGAATATTAGTTAATATTTAATTATGTTTTTAAGTTAAT GCGAAAAACATCTCAAGAGGCGTTTTTTTTATAATATTCATACGTAAAAGGGTTTTGATGTCAATTACGCTAACTTAAAGGGTGTTTTAGGAATAAAAACGCATTAAACTGGAGTTTTAGCTAGATTAAAAGATGATCATTACTTCATTTACAAAGGCTAACTAGTTAAAAGAACAATATACTAAAAATTCTTGGGTTCTTCTAAGCATGCAACACATGTCCTTGAAGTCTCAATCACAACCACCACACTACAAATCACTCCATGAGTTCTTTAGGTGCACCTTAACTTTTTCCATGAGAGTTCATACCTCAAAATACATTATCTTTTTTAGAAGCCATATTTTATTTATTTAATTATGACAATATAAATATATAATCCAATTATCCACCTTCCAAAAAAAGACAATGATTCCATCACATGACTAAACAAATTAAGCAACTCTTTTCCTCCACTAAACTTTTCTCCCCACTAAATTCCAAACTCTAAATTTCCTTCAAAATTTCCTCACATTTTATAAGCCCTTTTTACACTTACATTGTTCATATTCTTCAATTTCTCAGCCATGAATAATACTAGCTCAAACAAAACAATTCCAAGATTAAAACTTTTGGATTTCTCCCTTAGAATCTCTGTTATTCCACTAAGTATTGCTTCTTTATGCTTAACTATTGGCACTAATGAAGATAATCCTGATTATGGAAGCATTAAGTTCCTGAATTTCTCAGGCCTCAAGTATATGGTTGCTGTTGCTGCCATTGCTGCTGGGTATGGTGTTGTTGCTGCAATCTCAACTTGGATTCCTTGCTTAGTTAACAAAGCTTGGCTTTTCTTTGTCTCTGATCAGGTGATGGCGTACTTAATGTTGACATCAGAGGCAGCAGGAGCAGAGTTAATGTATTTGGCATACAAAGGTGATGTTGATGTTGCATGGAGTGAAGCCTGCACTGCATATCCACATTTCTGCACTAATCTCAAACTTGCTCTTCTTCTTCATTTCTTAGCTCTCTTTTGCTTCCTTTTTTTGGCTCTCATCTCTGCTTTTAGGGCTTTCTCCATGTTTGATCCCCCGTTTTCGCCCGATCGATCAACAGGACTTAATTAATAATTAATAATTAATAGCTACATTGATCTCAACTAATCACGTACTTACAGAATACGGAGTAGTAGTGATACATTTTGAGCTGATTCACATTGTAATCTTTTGTTAAATGATCAAGGTTTGATCCAGTTTGTGATTAGCAAGCATTTAGCTCAGATTGTAATTAATTTCGACATCTTTATTGTAACTAATAGAAGTGGACCTACTAGCTGGGCTAGTGTGTGCTTTGGGCTTGGGAGTGCTTGTGGGTGGGCTATTAATATTTTAATTAAGAATATTAGTTAATATTTAATTATGTTTTTAAGTTAAT ATGAATAATACTAGCTCAAACAAAACAATTCCAAGATTAAAACTTTTGGATTTCTCCCTTAGAATCTCTGTTATTCCACTAAGTATTGCTTCTTTATGCTTAACTATTGGCACTAATGAAGATAATCCTGATTATGGAAGCATTAAGTTCCTGAATTTCTCAGGCCTCAAGTATATGGTTGCTGTTGCTGCCATTGCTGCTGGGTATGGTGTTGTTGCTGCAATCTCAACTTGGATTCCTTGCTTAGTTAACAAAGCTTGGCTTTTCTTTGTCTCTGATCAGGTGATGGCGTACTTAATGTTGACATCAGAGGCAGCAGGAGCAGAGTTAATGTATTTGGCATACAAAGGTGATGTTGATGTTGCATGGAGTGAAGCCTGCACTGCATATCCACATTTCTGCACTAATCTCAAACTTGCTCTTCTTCTTCATTTCTTAGCTCTCTTTTGCTTCCTTTTTTTGGCTCTCATCTCTGCTTTTAGGGCTTTCTCCATGTTTGATCCCCCGTTTTCGCCCGATCGATCAACAGGACTTAATTAA MNNTSSNKTIPRLKLLDFSLRISVIPLSIASLCLTIGTNEDNPDYGSIKFLNFSGLKYMVAVAAIAAGYGVVAAISTWIPCLVNKAWLFFVSDQVMAYLMLTSEAAGAELMYLAYKGDVDVAWSEACTAYPHFCTNLKLALLLHFLALFCFLFLALISAFRAFSMFDPPFSPDRSTGLN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo27353.1 vs. NCBI nr
Match: gi|902195276|gb|KNA12787.1| (hypothetical protein SOVF_122740 [Spinacia oleracea]) HSP 1 Score: 350.1 bits (897), Expect = 2.200e-93 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Spo27353.1 vs. NCBI nr
Match: gi|731329691|ref|XP_010675729.1| (PREDICTED: CASP-like protein 2D1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 275.8 bits (704), Expect = 5.400e-71 Identity = 138/166 (83.13%), Postives = 153/166 (92.17%), Query Frame = 1
BLAST of Spo27353.1 vs. NCBI nr
Match: gi|225460947|ref|XP_002279766.1| (PREDICTED: CASP-like protein 2D1 [Vitis vinifera]) HSP 1 Score: 204.9 bits (520), Expect = 1.200e-49 Identity = 101/166 (60.84%), Postives = 132/166 (79.52%), Query Frame = 1
BLAST of Spo27353.1 vs. NCBI nr
Match: gi|147776968|emb|CAN63416.1| (hypothetical protein VITISV_007688 [Vitis vinifera]) HSP 1 Score: 204.1 bits (518), Expect = 2.000e-49 Identity = 101/166 (60.84%), Postives = 131/166 (78.92%), Query Frame = 1
BLAST of Spo27353.1 vs. NCBI nr
Match: gi|743844191|ref|XP_011027146.1| (PREDICTED: CASP-like protein 2D1 [Populus euphratica]) HSP 1 Score: 201.8 bits (512), Expect = 9.900e-49 Identity = 98/162 (60.49%), Postives = 128/162 (79.01%), Query Frame = 1
BLAST of Spo27353.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1W3_SPIOL (CASP-like protein OS=Spinacia oleracea GN=SOVF_122740 PE=3 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 1.600e-93 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1
BLAST of Spo27353.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CL23_BETVU (CASP-like protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g088470 PE=3 SV=1) HSP 1 Score: 275.8 bits (704), Expect = 3.700e-71 Identity = 138/166 (83.13%), Postives = 153/166 (92.17%), Query Frame = 1
BLAST of Spo27353.1 vs. UniProtKB/TrEMBL
Match: A0A067F5Z9_CITSI (CASP-like protein OS=Citrus sinensis GN=CISIN_1g029644mg PE=3 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.000e-48 Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 1
BLAST of Spo27353.1 vs. UniProtKB/TrEMBL
Match: V4UN00_9ROSI (CASP-like protein OS=Citrus clementina GN=CICLE_v10009601mg PE=3 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.000e-48 Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 1
BLAST of Spo27353.1 vs. UniProtKB/TrEMBL
Match: W9R5U2_9ROSA (CASP-like protein OS=Morus notabilis GN=L484_004526 PE=3 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 9.900e-48 Identity = 101/172 (58.72%), Postives = 133/172 (77.33%), Query Frame = 1
BLAST of Spo27353.1 vs. ExPASy Swiss-Prot
Match: CSPL3_VITVI (CASP-like protein 2D1 OS=Vitis vinifera GN=VIT_19s0090g00570 PE=2 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 7.300e-52 Identity = 101/166 (60.84%), Postives = 132/166 (79.52%), Query Frame = 1
BLAST of Spo27353.1 vs. ExPASy Swiss-Prot
Match: CSPLC_POPTR (CASP-like protein 2D1 OS=Populus trichocarpa GN=POPTRDRAFT_833824 PE=3 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 4.000e-50 Identity = 96/162 (59.26%), Postives = 128/162 (79.01%), Query Frame = 1
BLAST of Spo27353.1 vs. ExPASy Swiss-Prot
Match: CSPL7_RICCO (CASP-like protein 2D1 OS=Ricinus communis GN=RCOM_1302390 PE=2 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.500e-49 Identity = 98/161 (60.87%), Postives = 123/161 (76.40%), Query Frame = 1
BLAST of Spo27353.1 vs. ExPASy Swiss-Prot
Match: CSPLX_ARATH (CASP-like protein 2D1 OS=Arabidopsis thaliana GN=At5g54980 PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.000e-45 Identity = 87/157 (55.41%), Postives = 123/157 (78.34%), Query Frame = 1
BLAST of Spo27353.1 vs. ExPASy Swiss-Prot
Match: CSPL2_ARALL (CASP-like protein 2D1 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495581 PE=3 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.700e-45 Identity = 89/157 (56.69%), Postives = 121/157 (77.07%), Query Frame = 1
BLAST of Spo27353.1 vs. TAIR (Arabidopsis)
Match: AT5G54980.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 184.5 bits (467), Expect = 5.700e-47 Identity = 87/157 (55.41%), Postives = 123/157 (78.34%), Query Frame = 1
BLAST of Spo27353.1 vs. TAIR (Arabidopsis)
Match: AT1G17200.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 105.1 bits (261), Expect = 4.400e-23 Identity = 55/169 (32.54%), Postives = 101/169 (59.76%), Query Frame = 1
BLAST of Spo27353.1 vs. TAIR (Arabidopsis)
Match: AT3G14380.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 94.4 bits (233), Expect = 7.800e-20 Identity = 50/153 (32.68%), Postives = 93/153 (60.78%), Query Frame = 1
BLAST of Spo27353.1 vs. TAIR (Arabidopsis)
Match: AT4G16442.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 67.4 bits (163), Expect = 1.000e-11 Identity = 47/165 (28.48%), Postives = 81/165 (49.09%), Query Frame = 1
BLAST of Spo27353.1 vs. TAIR (Arabidopsis)
Match: AT2G36100.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 52.8 bits (125), Expect = 2.600e-7 Identity = 42/158 (26.58%), Postives = 73/158 (46.20%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27353.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27353.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27353.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo27353.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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