Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGACTCTTTTCAATGGCCTTCGCCGGCGGCAGTTTAATCCTTATCGGAGCTTGGGAATCTCTCTCCTCCTCTTCCTCCCCACCACCACCACCACCACCCAACAACCACCGCCGTTTCTCCACAATCACCCTAATCTCCGCCGCATCACTCTCTTTACTCTTCATCATCGACTCTCTACTGTCCTTCTTCAACGCAACCTCCTCAAACGACAAAGTTGGGTCCGCCGTTCAACTCCAGGTACTCGCAATTTCCTCCCTTTTCTTCATGTTTTCTCTTCTGGGTTCCCTCAATTTCCCTTACCCTTTACTCAATTTGATCCTTCTCTTCGCTTTTCTTGAAGAATTTCTTCTTTTTCACCTCCATTTGAAAGATTCTGATGGGATTGAGAATCGTTATTATGATTTAATGCTTGTTCCGATTGCGATTTGTGCGTTTTCCACTATGATTGAATTGATTTCCCCAGATTCTGGAACCCCTAAATTAGGTCGTGGGTTAGGGTTAATCTTGCAGGGGACTTGGTTTGTGCAAATGGGGTTTTCGTTTTTCACGGACTTGATTGCGAATAACTGCAATTTGCATATTAAGAGTAGGGGGAATTATACGATCAATTGCAAGGGTCATATGGATACTCACCGTGGAGGGGCGATTGCTGTGCTTATGTTTAATTGCCACCTTGCTTTCCTTGTTGCTCTGTTTTGTGGGGTGTTTTCGGTTTTTGGGAGAAGGTTTGTCGCCCAGGGTGATCACTTGAAGTACCGGCCCCTCGGTGCTGAGTTGCGAAGAATGGAGAACCAAGGGAGGTTTACTTTGGATTCTGATTCCGATGATGGTGTCATTGATGTGGTTAAACAAGGAGATTGTAGTTCCGGGTTAAGAGGAGAGAATGGTGCTGTAGAGTTGGGTGTCAATGGTCATGGTTCTCATTCAGAGAATTAG ATGGGACTCTTTTCAATGGCCTTCGCCGGCGGCAGTTTAATCCTTATCGGAGCTTGGGAATCTCTCTCCTCCTCTTCCTCCCCACCACCACCACCACCACCCAACAACCACCGCCGTTTCTCCACAATCACCCTAATCTCCGCCGCATCACTCTCTTTACTCTTCATCATCGACTCTCTACTGTCCTTCTTCAACGCAACCTCCTCAAACGACAAAGTTGGGTCCGCCGTTCAACTCCAGGTACTCGCAATTTCCTCCCTTTTCTTCATGTTTTCTCTTCTGGGTTCCCTCAATTTCCCTTACCCTTTACTCAATTTGATCCTTCTCTTCGCTTTTCTTGAAGAATTTCTTCTTTTTCACCTCCATTTGAAAGATTCTGATGGGATTGAGAATCGTTATTATGATTTAATGCTTGTTCCGATTGCGATTTGTGCGTTTTCCACTATGATTGAATTGATTTCCCCAGATTCTGGAACCCCTAAATTAGGTCGTGGGTTAGGGTTAATCTTGCAGGGGACTTGGTTTGTGCAAATGGGGTTTTCGTTTTTCACGGACTTGATTGCGAATAACTGCAATTTGCATATTAAGAGTAGGGGGAATTATACGATCAATTGCAAGGGTCATATGGATACTCACCGTGGAGGGGCGATTGCTGTGCTTATGTTTAATTGCCACCTTGCTTTCCTTGTTGCTCTGTTTTGTGGGGTGTTTTCGGTTTTTGGGAGAAGGTTTGTCGCCCAGGGTGATCACTTGAAGTACCGGCCCCTCGGTGCTGAGTTGCGAAGAATGGAGAACCAAGGGAGGTTTACTTTGGATTCTGATTCCGATGATGGTGTCATTGATGTGGTTAAACAAGGAGATTGTAGTTCCGGGTTAAGAGGAGAGAATGGTGCTGTAGAGTTGGGTGTCAATGGTCATGGTTCTCATTCAGAGAATTAG ATGGGACTCTTTTCAATGGCCTTCGCCGGCGGCAGTTTAATCCTTATCGGAGCTTGGGAATCTCTCTCCTCCTCTTCCTCCCCACCACCACCACCACCACCCAACAACCACCGCCGTTTCTCCACAATCACCCTAATCTCCGCCGCATCACTCTCTTTACTCTTCATCATCGACTCTCTACTGTCCTTCTTCAACGCAACCTCCTCAAACGACAAAGTTGGGTCCGCCGTTCAACTCCAGGTACTCGCAATTTCCTCCCTTTTCTTCATGTTTTCTCTTCTGGGTTCCCTCAATTTCCCTTACCCTTTACTCAATTTGATCCTTCTCTTCGCTTTTCTTGAAGAATTTCTTCTTTTTCACCTCCATTTGAAAGATTCTGATGGGATTGAGAATCGTTATTATGATTTAATGCTTGTTCCGATTGCGATTTGTGCGTTTTCCACTATGATTGAATTGATTTCCCCAGATTCTGGAACCCCTAAATTAGGTCGTGGGTTAGGGTTAATCTTGCAGGGGACTTGGTTTGTGCAAATGGGGTTTTCGTTTTTCACGGACTTGATTGCGAATAACTGCAATTTGCATATTAAGAGTAGGGGGAATTATACGATCAATTGCAAGGGTCATATGGATACTCACCGTGGAGGGGCGATTGCTGTGCTTATGTTTAATTGCCACCTTGCTTTCCTTGTTGCTCTGTTTTGTGGGGTGTTTTCGGTTTTTGGGAGAAGGTTTGTCGCCCAGGGTGATCACTTGAAGTACCGGCCCCTCGGTGCTGAGTTGCGAAGAATGGAGAACCAAGGGAGGTTTACTTTGGATTCTGATTCCGATGATGGTGTCATTGATGTGGTTAAACAAGGAGATTGTAGTTCCGGGTTAAGAGGAGAGAATGGTGCTGTAGAGTTGGGTGTCAATGGTCATGGTTCTCATTCAGAGAATTAG MGLFSMAFAGGSLILIGAWESLSSSSSPPPPPPPNNHRRFSTITLISAASLSLLFIIDSLLSFFNATSSNDKVGSAVQLQVLAISSLFFMFSLLGSLNFPYPLLNLILLFAFLEEFLLFHLHLKDSDGIENRYYDLMLVPIAICAFSTMIELISPDSGTPKLGRGLGLILQGTWFVQMGFSFFTDLIANNCNLHIKSRGNYTINCKGHMDTHRGGAIAVLMFNCHLAFLVALFCGVFSVFGRRFVAQGDHLKYRPLGAELRRMENQGRFTLDSDSDDGVIDVVKQGDCSSGLRGENGAVELGVNGHGSHSEN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo28186.1 vs. NCBI nr
Match: gi|902212426|gb|KNA16964.1| (hypothetical protein SOVF_084410 [Spinacia oleracea]) HSP 1 Score: 600.1 bits (1546), Expect = 2.200e-168 Identity = 309/312 (99.04%), Postives = 309/312 (99.04%), Query Frame = 1
BLAST of Spo28186.1 vs. NCBI nr
Match: gi|731368214|ref|XP_010696019.1| (PREDICTED: transmembrane protein 45B [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 470.7 bits (1210), Expect = 2.000e-129 Identity = 250/319 (78.37%), Postives = 271/319 (84.95%), Query Frame = 1
BLAST of Spo28186.1 vs. NCBI nr
Match: gi|595931099|ref|XP_007215299.1| (hypothetical protein PRUPE_ppa005073mg [Prunus persica]) HSP 1 Score: 313.9 bits (803), Expect = 3.100e-82 Identity = 171/332 (51.51%), Postives = 236/332 (71.08%), Query Frame = 1
BLAST of Spo28186.1 vs. NCBI nr
Match: gi|657975886|ref|XP_008379804.1| (PREDICTED: uncharacterized protein LOC103442775 [Malus domestica]) HSP 1 Score: 312.4 bits (799), Expect = 9.000e-82 Identity = 175/335 (52.24%), Postives = 230/335 (68.66%), Query Frame = 1
BLAST of Spo28186.1 vs. NCBI nr
Match: gi|645249269|ref|XP_008230673.1| (PREDICTED: uncharacterized protein LOC103329924 [Prunus mume]) HSP 1 Score: 311.6 bits (797), Expect = 1.500e-81 Identity = 169/331 (51.06%), Postives = 235/331 (71.00%), Query Frame = 1
BLAST of Spo28186.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD93_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084410 PE=4 SV=1) HSP 1 Score: 600.1 bits (1546), Expect = 1.500e-168 Identity = 309/312 (99.04%), Postives = 309/312 (99.04%), Query Frame = 1
BLAST of Spo28186.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBA6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g177360 PE=4 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 1.400e-129 Identity = 250/319 (78.37%), Postives = 271/319 (84.95%), Query Frame = 1
BLAST of Spo28186.1 vs. UniProtKB/TrEMBL
Match: G5DWS5_SILLA (Putative uncharacterized protein (Fragment) OS=Silene latifolia PE=2 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 4.200e-102 Identity = 200/317 (63.09%), Postives = 244/317 (76.97%), Query Frame = 1
BLAST of Spo28186.1 vs. UniProtKB/TrEMBL
Match: G5DWS6_SILLA (Putative uncharacterized protein (Fragment) OS=Silene latifolia PE=2 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 1.600e-101 Identity = 201/317 (63.41%), Postives = 242/317 (76.34%), Query Frame = 1
BLAST of Spo28186.1 vs. UniProtKB/TrEMBL
Match: M5X4Q5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005073mg PE=3 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 2.200e-82 Identity = 171/332 (51.51%), Postives = 236/332 (71.08%), Query Frame = 1
BLAST of Spo28186.1 vs. ExPASy Swiss-Prot
Match: TM45B_XENLA (Transmembrane protein 45B OS=Xenopus laevis GN=tmem45b PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 6.200e-6 Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1
BLAST of Spo28186.1 vs. TAIR (Arabidopsis)
Match: AT3G01360.1 (Family of unknown function (DUF716) ) HSP 1 Score: 268.9 bits (686), Expect = 4.000e-72 Identity = 169/335 (50.45%), Postives = 207/335 (61.79%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo28186.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo28186.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo28186.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo28186.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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