Spo28189 (gene)

Overview
NameSpo28189
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSigma factor binding protein 1, chloroplastic (AtsibI) (Sigma factor binding protein I) (SigA binding protein) (Precursor)
LocationSpoScf_00309 : 417333 .. 417917 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATGTTAGCCAAAACCCTAGTTTTCACCTCTCAAAACCTCCCCATAAGCTAAAAACTAAACCCACCAAAAGAACAACAAGATCTAGAAACAAGAATAACAACACGGCTACCACGGCCGCCTCCACCACCAACAACAACCACAACAAGCCACTCAAGGTGGTTCACATCTCTAACCCTATGAAGTTCCAAGTCGCCGCAGCTGGGTTTCGAGCCCTTGTCCAAGGGCTCACCGGCCGCGACGCCGTAATCGACTGGCCTGAGGAACACCAACCCGACTTCGAAGTTGTGGCGGCTGCTGCTGGCGTTGCTGAAGATGATACTGCTGAGGATGATAGTAGTGCTAACAGTACGGATGATCAGGTAAATGATCACCACCATCATCAGCATCGTGATGAGGTTGTTAATATGTCTGCCTGTTTCGGGCCGTCCGATCATTATAATCTGATGAGCTTTGATTATTACGGGGCCCACTTTAATGGTGACGTCATTGTGGATGACGATGTTGAACAAAGCATGGTTGTTATGGATGATTTCCGCGCTTTTTTGGGGGATGTTAATCAATCATTACTTCATTATTAA

mRNA sequence

ATGTCAGATGTTAGCCAAAACCCTAGTTTTCACCTCTCAAAACCTCCCCATAAGCTAAAAACTAAACCCACCAAAAGAACAACAAGATCTAGAAACAAGAATAACAACACGGCTACCACGGCCGCCTCCACCACCAACAACAACCACAACAAGCCACTCAAGGTGGTTCACATCTCTAACCCTATGAAGTTCCAAGTCGCCGCAGCTGGGTTTCGAGCCCTTGTCCAAGGGCTCACCGGCCGCGACGCCGTAATCGACTGGCCTGAGGAACACCAACCCGACTTCGAAGTTGTGGCGGCTGCTGCTGGCGTTGCTGAAGATGATACTGCTGAGGATGATAGTAGTGCTAACAGTACGGATGATCAGGTAAATGATCACCACCATCATCAGCATCGTGATGAGGTTGTTAATATGTCTGCCTGTTTCGGGCCGTCCGATCATTATAATCTGATGAGCTTTGATTATTACGGGGCCCACTTTAATGGTGACGTCATTGTGGATGACGATGTTGAACAAAGCATGGTTGTTATGGATGATTTCCGCGCTTTTTTGGGGGATGTTAATCAATCATTACTTCATTATTAA

Coding sequence (CDS)

ATGTCAGATGTTAGCCAAAACCCTAGTTTTCACCTCTCAAAACCTCCCCATAAGCTAAAAACTAAACCCACCAAAAGAACAACAAGATCTAGAAACAAGAATAACAACACGGCTACCACGGCCGCCTCCACCACCAACAACAACCACAACAAGCCACTCAAGGTGGTTCACATCTCTAACCCTATGAAGTTCCAAGTCGCCGCAGCTGGGTTTCGAGCCCTTGTCCAAGGGCTCACCGGCCGCGACGCCGTAATCGACTGGCCTGAGGAACACCAACCCGACTTCGAAGTTGTGGCGGCTGCTGCTGGCGTTGCTGAAGATGATACTGCTGAGGATGATAGTAGTGCTAACAGTACGGATGATCAGGTAAATGATCACCACCATCATCAGCATCGTGATGAGGTTGTTAATATGTCTGCCTGTTTCGGGCCGTCCGATCATTATAATCTGATGAGCTTTGATTATTACGGGGCCCACTTTAATGGTGACGTCATTGTGGATGACGATGTTGAACAAAGCATGGTTGTTATGGATGATTTCCGCGCTTTTTTGGGGGATGTTAATCAATCATTACTTCATTATTAA

Protein sequence

MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISNPMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTDDQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDFRAFLGDVNQSLLHY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo28189.1Spo28189.1mRNA


Homology
BLAST of Spo28189.1 vs. NCBI nr
Match: gi|902170544|gb|KNA07853.1| (hypothetical protein SOVF_167920 [Spinacia oleracea])

HSP 1 Score: 383.6 bits (984), Expect = 2.000e-103
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1

		  

Query: 1   MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60
           MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN
Sbjct: 1   MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60

Query: 61  PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120
           PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD
Sbjct: 61  PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120

Query: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180
           DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF
Sbjct: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180

Query: 181 RAFLGDVNQSLLHY 195
           RAFLGDVNQSLLHY
Sbjct: 181 RAFLGDVNQSLLHY 194

BLAST of Spo28189.1 vs. NCBI nr
Match: gi|731324534|ref|XP_010673020.1| (PREDICTED: uncharacterized protein LOC104889490 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 136.3 bits (342), Expect = 5.500e-29
Identity = 93/199 (46.73%), Postives = 117/199 (58.79%), Query Frame = 1

		  

Query: 1   MSDVSQNPSFHLSKPPHKL-------KTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPL 60
           MS+V+QNP+FHLSKPPHKL       K KPT + +     NNNT+T+  + TN N NKPL
Sbjct: 1   MSEVTQNPNFHLSKPPHKLTNKQTMFKNKPTTKRSGKPKYNNNTSTSTNTNTNTN-NKPL 60

Query: 61  KVVHISNPMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDD 120
           KVVHISNPMKFQ  AA FR LVQGLTGRDAV  WP+E   + + V A           +D
Sbjct: 61  KVVHISNPMKFQATAAEFRDLVQGLTGRDAVFKWPDEQLYEVQQVNAEI---------ED 120

Query: 121 SSANSTDDQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQS 180
                 DD +    H Q   + V++SACFGP+DH  L  +DY+         VD   E  
Sbjct: 121 CGVTINDDLI---LHEQVVHKEVDLSACFGPNDH--LGGYDYF---------VD---EHH 172

Query: 181 MVVMDDFRAFLGDVNQSLL 193
           +VVM+D RAF+G  +  L+
Sbjct: 181 LVVMEDLRAFIGADDDDLM 172

BLAST of Spo28189.1 vs. NCBI nr
Match: gi|870864049|gb|KMT15182.1| (hypothetical protein BVRB_3g062950 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 2.000e-10
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 1

		  

Query: 62  MKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTDD 121
           MKFQ  AA FR LVQGLTGRDAV  WP+E   + + V A           +D      DD
Sbjct: 1   MKFQATAAEFRDLVQGLTGRDAVFKWPDEQLYEVQQVNAEI---------EDCGVTINDD 60

Query: 122 QVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDFR 181
            +    H Q   + V++SACFGP+DH  L  +DY+         VD   E  +VVM+D R
Sbjct: 61  LI---LHEQVVHKEVDLSACFGPNDH--LGGYDYF---------VD---EHHLVVMEDLR 105

Query: 182 AFLGDVNQSLL 193
           AF+G  +  L+
Sbjct: 121 AFIGADDDDLM 105

BLAST of Spo28189.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QME1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167920 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.400e-103
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 1

		  

Query: 1   MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60
           MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN
Sbjct: 1   MSDVSQNPSFHLSKPPHKLKTKPTKRTTRSRNKNNNTATTAASTTNNNHNKPLKVVHISN 60

Query: 61  PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120
           PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD
Sbjct: 61  PMKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTD 120

Query: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180
           DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF
Sbjct: 121 DQVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDF 180

Query: 181 RAFLGDVNQSLLHY 195
           RAFLGDVNQSLLHY
Sbjct: 181 RAFLGDVNQSLLHY 194

BLAST of Spo28189.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNT4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062950 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-10
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 1

		  

Query: 62  MKFQVAAAGFRALVQGLTGRDAVIDWPEEHQPDFEVVAAAAGVAEDDTAEDDSSANSTDD 121
           MKFQ  AA FR LVQGLTGRDAV  WP+E   + + V A           +D      DD
Sbjct: 1   MKFQATAAEFRDLVQGLTGRDAVFKWPDEQLYEVQQVNAEI---------EDCGVTINDD 60

Query: 122 QVNDHHHHQHRDEVVNMSACFGPSDHYNLMSFDYYGAHFNGDVIVDDDVEQSMVVMDDFR 181
            +    H Q   + V++SACFGP+DH  L  +DY+         VD   E  +VVM+D R
Sbjct: 61  LI---LHEQVVHKEVDLSACFGPNDH--LGGYDYF---------VD---EHHLVVMEDLR 105

Query: 182 AFLGDVNQSLL 193
           AF+G  +  L+
Sbjct: 121 AFIGADDDDLM 105

The following BLAST results are available for this feature:
BLAST of Spo28189.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902170544|gb|KNA07853.1|2.0e-103100.hypothetical protein SOVF_1679... [more]
gi|731324534|ref|XP_010673020.1|5.5e-2946.7PREDICTED: uncharacterized pro... [more]
gi|870864049|gb|KMT15182.1|2.0e-1040.4hypothetical protein BVRB_3g06... [more]
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BLAST of Spo28189.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QME1_SPIOL1.4e-103100.Uncharacterized protein OS=Spi... [more]
A0A0J8CNT4_BETVU1.4e-1040.4Uncharacterized protein OS=Bet... [more]
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BLAST of Spo28189.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo28189.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 58..83
score: 3.
NoneNo IPR availablePANTHERPTHR33624FAMILY NOT NAMEDcoord: 27..155
score: 2.4
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 27..155
score: 2.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046339 diacylglycerol metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009790 embryo development
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0070676 intralumenal vesicle formation
biological_process GO:0061025 membrane fusion
biological_process GO:0015031 protein transport
biological_process GO:0010200 response to chitin
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0007034 vacuolar transport
biological_process GO:0045017 glycerolipid biosynthetic process
biological_process GO:0042128 nitrate assimilation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006887 exocytosis
biological_process GO:0009966 regulation of signal transduction
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006013 mannose metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0006094 gluconeogenesis
biological_process GO:0042732 D-xylose metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0080005 photosystem stoichiometry adjustment
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0050896 response to stimulus
biological_process GO:0006629 lipid metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0005992 trehalose biosynthetic process
biological_process GO:0010167 response to nitrate
biological_process GO:0015706 nitrate transport
biological_process GO:0050832 defense response to fungus
biological_process GO:0002213 defense response to insect
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006457 protein folding
biological_process GO:0071555 cell wall organization
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0007623 circadian rhythm
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006011 UDP-glucose metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0070536 protein K63-linked deubiquitination
biological_process GO:0071108 protein K48-linked deubiquitination
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010162 seed dormancy process
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0005618 cell wall
cellular_component GO:0009507 chloroplast
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0071944 cell periphery
cellular_component GO:0000145 exocyst
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000815 ESCRT III complex
cellular_component GO:0005771 multivesicular body
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005730 nucleolus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0008287 protein serine/threonine phosphatase complex
molecular_function GO:0004435 phosphatidylinositol phospholipase C activity
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0016760 cellulose synthase (UDP-forming) activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003939 L-iditol 2-dehydrogenase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004034 aldose 1-epimerase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0004144 diacylglycerol O-acyltransferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0005506 iron ion binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0020037 heme binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016301 kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo080340.79Barchart | Table
Spo235040.76Barchart | Table
Spo103600.76Barchart | Table
Spo011980.75Barchart | Table
Spo003400.73Barchart | Table
Spo001240.73Barchart | Table
Spo018070.73Barchart | Table
Spo257870.73Barchart | Table
Spo241780.72Barchart | Table
Spo116110.71Barchart | Table
Spo013410.71Barchart | Table
Spo127120.71Barchart | Table
Spo268110.71Barchart | Table
Spo024810.71Barchart | Table
Spo038580.70Barchart | Table
Spo120250.70Barchart | Table
Spo173380.70Barchart | Table
Spo001720.70Barchart | Table
Spo016160.69Barchart | Table
Spo001140.69Barchart | Table
Spo025480.69Barchart | Table
Spo039030.69Barchart | Table
Spo100230.69Barchart | Table
Spo101710.69Barchart | Table
Spo106530.69Barchart | Table
Spo108610.69Barchart | Table
Spo197880.69Barchart | Table
Spo065430.68Barchart | Table
Spo077780.68Barchart | Table
Spo024060.68Barchart | Table
Spo035460.68Barchart | Table
Spo247900.68Barchart | Table
Spo025130.68Barchart | Table
Spo024050.68Barchart | Table
Spo242690.68Barchart | Table
Spo024540.68Barchart | Table
Spo058160.67Barchart | Table
Spo122180.67Barchart | Table
Spo231720.67Barchart | Table
Spo232380.67Barchart | Table
Spo107520.67Barchart | Table
Spo022520.67Barchart | Table
Spo076230.66Barchart | Table
Spo128490.66Barchart | Table
Spo165870.66Barchart | Table
Spo176310.66Barchart | Table
Spo197510.66Barchart | Table
Spo197730.66Barchart | Table
Spo217440.66Barchart | Table
Spo223640.66Barchart | Table
Spo083720.66Barchart | Table
Spo106440.66Barchart | Table
Spo111930.65Barchart | Table
Spo205950.65Barchart | Table
Spo251290.65Barchart | Table