Spo28268 (gene) | SpinachBase

Overview


Name	Spo28268
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ribonuclease H-like superfamily protein
Location	chr4 : 99037727 .. 99038611 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGGAGTGAGAGATGTAGCGTCACTCAATTCGGATCTGCTCTCCAAACAAGCGTCGTCTTCACCGGTAGAGTCGTCAAACACCCTAACCAGCTAGTCATCCCCCCTAAAAGCCGCCTGCCGGCGACAATAAATGTGGTCAAGAATGGCGGCGACACCAAACTTGCGCCGCTCAAACAGGAGCTTAACTCGGCAACCACGATAACTGATCTTATAAATCCACAACCATTGTGGAAAACCACTGTCATTTGGGTCAATATTATAACCACCCTGTGGGCTATCTGGGTTCACAAAAACGAGACAATGTTCAGAGAAATAGAGGTTGATACAGAAATAATCTCCCAAATCAACAAAGACCGTATCAGTAGCTGGAATGATTCAGACACACATCTCGTAACCCAGAGAAAACTCAACCTATCTACTCACTGGGTTAGTGGCTATCCCTCAACAAAGAGATTCATTACAATTTTGGTTGACGCATCTTGGGTTGAAGACGATAAGATTAAACCAGGTCAATCGGGAGCAGCAGTAGCCTATATCGCCGAGGAAGATGATGATAATAGTTCATCAAGAATTCAGGGAAGTAAGCGTATAGTTGCAGAATCTGCATTACAAGCTGAATGTTATGCAATTTTGTATGGGATTAATGAAGCTGCAAAAGTTTATAAGAATGTGATAGTGAAATCGGATTGTTTGAGGGCTATACATGCTTTAACTGATCCTGAGGGAGTTCCATATAGATCTAATATCTTACCTATTATTAAGGATATTAGGAGAGTAGCTTCGAAATTGCATTCTTGTGCTTGTATTTGGGTTCATAGGGATAAGGTTTGTAAAGCTAATGACCTTGCTGTATTGGCTAGAAAGGGTACTTCTCTTTGA

mRNA sequence

ATGCTCGGGAGTGAGAGATGTAGCGTCACTCAATTCGGATCTGCTCTCCAAACAAGCGTCGTCTTCACCGGTAGAGTCGTCAAACACCCTAACCAGCTAGTCATCCCCCCTAAAAGCCGCCTGCCGGCGACAATAAATGTGGTCAAGAATGGCGGCGACACCAAACTTGCGCCGCTCAAACAGGAGCTTAACTCGGCAACCACGATAACTGATCTTATAAATCCACAACCATTGTGGAAAACCACTGTCATTTGGGTCAATATTATAACCACCCTGTGGGCTATCTGGGTTCACAAAAACGAGACAATGTTCAGAGAAATAGAGGTTGATACAGAAATAATCTCCCAAATCAACAAAGACCGTATCAGTAGCTGGAATGATTCAGACACACATCTCGTAACCCAGAGAAAACTCAACCTATCTACTCACTGGGTTAGTGGCTATCCCTCAACAAAGAGATTCATTACAATTTTGGTTGACGCATCTTGGGTTGAAGACGATAAGATTAAACCAGGTCAATCGGGAGCAGCAGTAGCCTATATCGCCGAGGAAGATGATGATAATAGTTCATCAAGAATTCAGGGAAGTAAGCGTATAGTTGCAGAATCTGCATTACAAGCTGAATGTTATGCAATTTTGTATGGGATTAATGAAGCTGCAAAAGTTTATAAGAATGTGATAGTGAAATCGGATTGTTTGAGGGCTATACATGCTTTAACTGATCCTGAGGGAGTTCCATATAGATCTAATATCTTACCTATTATTAAGGATATTAGGAGAGTAGCTTCGAAATTGCATTCTTGTGCTTGTATTTGGGTTCATAGGGATAAGGTTTGTAAAGCTAATGACCTTGCTGTATTGGCTAGAAAGGGTACTTCTCTTTGA

Coding sequence (CDS)

ATGCTCGGGAGTGAGAGATGTAGCGTCACTCAATTCGGATCTGCTCTCCAAACAAGCGTCGTCTTCACCGGTAGAGTCGTCAAACACCCTAACCAGCTAGTCATCCCCCCTAAAAGCCGCCTGCCGGCGACAATAAATGTGGTCAAGAATGGCGGCGACACCAAACTTGCGCCGCTCAAACAGGAGCTTAACTCGGCAACCACGATAACTGATCTTATAAATCCACAACCATTGTGGAAAACCACTGTCATTTGGGTCAATATTATAACCACCCTGTGGGCTATCTGGGTTCACAAAAACGAGACAATGTTCAGAGAAATAGAGGTTGATACAGAAATAATCTCCCAAATCAACAAAGACCGTATCAGTAGCTGGAATGATTCAGACACACATCTCGTAACCCAGAGAAAACTCAACCTATCTACTCACTGGGTTAGTGGCTATCCCTCAACAAAGAGATTCATTACAATTTTGGTTGACGCATCTTGGGTTGAAGACGATAAGATTAAACCAGGTCAATCGGGAGCAGCAGTAGCCTATATCGCCGAGGAAGATGATGATAATAGTTCATCAAGAATTCAGGGAAGTAAGCGTATAGTTGCAGAATCTGCATTACAAGCTGAATGTTATGCAATTTTGTATGGGATTAATGAAGCTGCAAAAGTTTATAAGAATGTGATAGTGAAATCGGATTGTTTGAGGGCTATACATGCTTTAACTGATCCTGAGGGAGTTCCATATAGATCTAATATCTTACCTATTATTAAGGATATTAGGAGAGTAGCTTCGAAATTGCATTCTTGTGCTTGTATTTGGGTTCATAGGGATAAGGTTTGTAAAGCTAATGACCTTGCTGTATTGGCTAGAAAGGGTACTTCTCTTTGA

Protein sequence

MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLKQELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKDRISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDNSSSRIQGSKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo28268.1	Spo28268.1	mRNA

Homology

[Close]

BLAST of Spo28268.1 vs. NCBI nr
Match: gi|902230105|gb|KNA21718.1| (hypothetical protein SOVF_040830 [Spinacia oleracea])

HSP 1 Score: 586.6 bits (1511), Expect = 2.300e-164
Identity = 293/294 (99.66%), Postives = 294/294 (100.00%), Query Frame = 1


		  
Query: 1   MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLK 60
           MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLK
Sbjct: 1   MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLK 60

Query: 61  QELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKD 120
           QELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKD
Sbjct: 61  QELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKD 120

Query: 121 RISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAY 180
           RISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAY
Sbjct: 121 RISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAY 180

Query: 181 IAEEDDDNSSSRIQGSKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALT 240
           IAEEDDDNSSSRIQGSKR+VAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALT
Sbjct: 181 IAEEDDDNSSSRIQGSKRMVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALT 240

Query: 241 DPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL 295
           DPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL
Sbjct: 241 DPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL 294

[Close]

BLAST of Spo28268.1 vs. NCBI nr
Match: gi|902134645|gb|KNA04408.1| (hypothetical protein SOVF_200080, partial [Spinacia oleracea])

HSP 1 Score: 107.8 bits (268), Expect = 3.200e-20
Identity = 77/225 (34.22%), Postives = 112/225 (49.78%), Query Frame = 1


		  
Query: 80  KTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKDRISSWNDSDTHLVTQRKLN 139
           K  V  V  I+TLWA+W+H+NE +F+  +     +  + +   S W   +T  + Q +L 
Sbjct: 3   KDDVRVVEFISTLWALWLHRNEVVFKNSQSSAARVMVLVEGGKSRW--LETRKLLQLQLG 62

Query: 140 LSTH-----------WVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDN 199
            +             W +G P+   F++++VDA+W +  K K  + GAA+A+  E    N
Sbjct: 63  ATDACNPKGKSKPFVWKAGTPTPGPFVSLVVDAAWKKIRKRKGSERGAAIAWKGER---N 122

Query: 200 SSSRIQGSKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYR 259
             S IQG  R+ A   +QAEC AI   +  A     N+I+K+DC   I AL +P     R
Sbjct: 123 EESHIQGWMRVCASCPVQAECLAIFEALKVACDHASNIIIKTDCQEVIDALRNPATADIR 182

Query: 260 SNILPIIKDIRRVASK--LHSCACIWVHRDKVCKANDLAVLARKG 292
             IL II+ I  +AS   L    CI V R  V  A+DLA   RKG
Sbjct: 183 --ILHIIQGIISLASNSILRFVVCIKVSRLMVSSAHDLASQVRKG 220

[Close]

BLAST of Spo28268.1 vs. NCBI nr
Match: gi|870857637|gb|KMT09185.1| (hypothetical protein BVRB_6g132880 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 102.1 bits (253), Expect = 1.700e-18
Identity = 71/213 (33.33%), Postives = 107/213 (50.23%), Query Frame = 1


		  
Query: 89  ITTLWAIWVHKNETMFREIEVDTEIISQINKDRISSWN-----------DSDTHLVTQRK 148
           I TLWAIWVH+NE +FR +  + + I  I KD    W+           +S   +    +
Sbjct: 619 IATLWAIWVHRNEVIFRGVLPNPDRIMMIKKDHSVRWHTTRERQTRRLANSVQDIHADSR 678

Query: 149 LNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDNSSSRIQGSK 208
           +N    W  G  +     T++VD +W  +  +   Q  AAVA+     + N+  + + + 
Sbjct: 679 INQRQEWTIGDRNISNIQTLVVDGAWKNNASLNHWQ--AAVAW----KNVNNDPKEEAAV 738

Query: 209 RIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYRSNILPIIKD 268
           +I A SA QAE YAIL  I++       +I+K+D +  I AL      PY  NI  IIKD
Sbjct: 739 KIFANSAEQAEAYAILKAISDMEWRSPGLIIKTDNIEVIRALKGDS--PYNKNIENIIKD 798

Query: 269 IRRVASKLHSCACIWVHRDKVCKANDLAVLARK 291
           I+R+A+     +C  V R++V  A+ LA  ARK
Sbjct: 799 IKRIANSFLFISCAKVSREEVQLAHKLATQARK 823

[Close]

BLAST of Spo28268.1 vs. NCBI nr
Match: gi|731345826|ref|XP_010684120.1| (PREDICTED: uncharacterized protein LOC104898717 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 100.5 bits (249), Expect = 5.100e-18
Identity = 74/215 (34.42%), Postives = 107/215 (49.77%), Query Frame = 1


		  
Query: 86  VNIITTLWAIWVHKNETMFREIEVDTEIISQINKDRISSWNDSDTHLV---------TQR 145
           ++ I+TLW IWVH+NE +F+E  V+   I +I K+ I   N     L           Q 
Sbjct: 314 ISFISTLWGIWVHRNEVIFKESSVNPGRIMEIIKENIYRANKGKNSLKDRTRVQNIGMQE 373

Query: 146 KLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDNSSSRIQGS 205
           + +   +W  G  +T    TILVD +W +  K    Q  AAVA+     + N   + + +
Sbjct: 374 EADSQLNWTIGDKNTPNVQTILVDGAWKKKSKSNMWQ--AAVAW----KNANKDPKEEYA 433

Query: 206 KRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYRSNILPIIK 265
            RI A SA Q E YAIL  I++       +I+K+D    I AL          +I  IIK
Sbjct: 434 ARIYASSAEQTEAYAILRAISDMEWRSAGIIIKTDNREVILALRSMNET--NKSISNIIK 493

Query: 266 DIRRVASKLHSCACIWVHRDKVCKANDLAVLARKG 292
           DI+R+A       CI V R+++  A++LAV ARKG
Sbjct: 494 DIKRIAHSYLFVTCIKVSREEIALAHNLAVKARKG 520

[Close]

BLAST of Spo28268.1 vs. NCBI nr
Match: gi|731346010|ref|XP_010684227.1| (PREDICTED: uncharacterized protein LOC104898818 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 91.7 bits (226), Expect = 2.400e-15
Identity = 67/217 (30.88%), Postives = 108/217 (49.77%), Query Frame = 1


		  
Query: 86  VNIITTLWAIWVHKNETMFREIEVDTEIISQI-------------NKDRISSWNDSDTHL 145
           ++ ++TLW IW+H+NE  F+ +  + E I  I             N+  I+   D    +
Sbjct: 248 IDFVSTLWGIWIHRNEVTFKGMSTNPERIMSIIKEHSLRAGKERRNRKEITGLRDQCLEV 307

Query: 146 VTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDNSSSR 205
              R L     W  G  +     TI+VD +W ++  ++  Q  AA+A+     + N+  R
Sbjct: 308 EDPRHL----EWSIGKEAVDNVKTIVVDGAWKKN--VRTNQCQAAIAW----KNLNNDPR 367

Query: 206 IQGSKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYRSNIL 265
            + + +I A SA+Q E YA+L  I++       +I+KSD    I AL +  G     NI 
Sbjct: 368 EESATKIFANSAVQTEAYAVLKAISDMEWRSAGLIIKSDNSEVIMALKNKLGT--NQNID 427

Query: 266 PIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLAR 290
            II+DIRR A+     +CI V R++V  A++LA+ AR
Sbjct: 428 NIIRDIRRKANSFLYISCIKVSREEVKLAHNLAISAR 452

[Close]

BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQG4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040830 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 1.600e-164
Identity = 293/294 (99.66%), Postives = 294/294 (100.00%), Query Frame = 1


		  
Query: 1   MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLK 60
           MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLK
Sbjct: 1   MLGSERCSVTQFGSALQTSVVFTGRVVKHPNQLVIPPKSRLPATINVVKNGGDTKLAPLK 60

Query: 61  QELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKD 120
           QELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKD
Sbjct: 61  QELNSATTITDLINPQPLWKTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKD 120

Query: 121 RISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAY 180
           RISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAY
Sbjct: 121 RISSWNDSDTHLVTQRKLNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAY 180

Query: 181 IAEEDDDNSSSRIQGSKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALT 240
           IAEEDDDNSSSRIQGSKR+VAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALT
Sbjct: 181 IAEEDDDNSSSRIQGSKRMVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALT 240

Query: 241 DPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL 295
           DPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL
Sbjct: 241 DPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDLAVLARKGTSL 294

[Close]

BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCJ3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_200080 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.200e-20
Identity = 77/225 (34.22%), Postives = 112/225 (49.78%), Query Frame = 1


		  
Query: 80  KTTVIWVNIITTLWAIWVHKNETMFREIEVDTEIISQINKDRISSWNDSDTHLVTQRKLN 139
           K  V  V  I+TLWA+W+H+NE +F+  +     +  + +   S W   +T  + Q +L 
Sbjct: 3   KDDVRVVEFISTLWALWLHRNEVVFKNSQSSAARVMVLVEGGKSRW--LETRKLLQLQLG 62

Query: 140 LSTH-----------WVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDN 199
            +             W +G P+   F++++VDA+W +  K K  + GAA+A+  E    N
Sbjct: 63  ATDACNPKGKSKPFVWKAGTPTPGPFVSLVVDAAWKKIRKRKGSERGAAIAWKGER---N 122

Query: 200 SSSRIQGSKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYR 259
             S IQG  R+ A   +QAEC AI   +  A     N+I+K+DC   I AL +P     R
Sbjct: 123 EESHIQGWMRVCASCPVQAECLAIFEALKVACDHASNIIIKTDCQEVIDALRNPATADIR 182

Query: 260 SNILPIIKDIRRVASK--LHSCACIWVHRDKVCKANDLAVLARKG 292
             IL II+ I  +AS   L    CI V R  V  A+DLA   RKG
Sbjct: 183 --ILHIIQGIISLASNSILRFVVCIKVSRLMVSSAHDLASQVRKG 220

[Close]

BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C610_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132880 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.200e-18
Identity = 71/213 (33.33%), Postives = 107/213 (50.23%), Query Frame = 1


		  
Query: 89  ITTLWAIWVHKNETMFREIEVDTEIISQINKDRISSWN-----------DSDTHLVTQRK 148
           I TLWAIWVH+NE +FR +  + + I  I KD    W+           +S   +    +
Sbjct: 619 IATLWAIWVHRNEVIFRGVLPNPDRIMMIKKDHSVRWHTTRERQTRRLANSVQDIHADSR 678

Query: 149 LNLSTHWVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDNSSSRIQGSK 208
           +N    W  G  +     T++VD +W  +  +   Q  AAVA+     + N+  + + + 
Sbjct: 679 INQRQEWTIGDRNISNIQTLVVDGAWKNNASLNHWQ--AAVAW----KNVNNDPKEEAAV 738

Query: 209 RIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYRSNILPIIKD 268
           +I A SA QAE YAIL  I++       +I+K+D +  I AL      PY  NI  IIKD
Sbjct: 739 KIFANSAEQAEAYAILKAISDMEWRSPGLIIKTDNIEVIRALKGDS--PYNKNIENIIKD 798

Query: 269 IRRVASKLHSCACIWVHRDKVCKANDLAVLARK 291
           I+R+A+     +C  V R++V  A+ LA  ARK
Sbjct: 799 IKRIANSFLFISCAKVSREEVQLAHKLATQARK 823

[Close]

BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6C6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_101740 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.200e-15
Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 1


		  
Query: 114 ISQINKDRISSWN--------DSDTHLVTQRKL-NLSTHWVSGYPSTKRFITILVDASWV 173
           I  + K+ + SW         DS+++   +  L N    W  G P T   +T+LVDA+W 
Sbjct: 8   ILMLVKEGMDSWTKRANLILADSESNPAERGLLQNPKMAWAIGKPLTTGHVTLLVDAAWK 67

Query: 174 EDDKIKPGQSGAAVAYIAEEDDDNSSSRIQGSKRIVAESALQAECYAILYGINEAAKVYK 233
              K K  + GA V +  E   +     I+ S RI A SALQAEC  I  G+   A + K
Sbjct: 68  GIQKRKNSEWGAGVGWQGERTTER---HIRDSMRICATSALQAECIEIWEGMKSVAGMSK 127

Query: 234 NVIVKSDCLRAIHALTDPEGVPYRSNILPIIKDIRRVASKLHSCACIWVHRDKVCKANDL 293
           N+++K++C  AI AL++P+     ++I  ++ DI  +AS L   +C+ V R  +  A+ L
Sbjct: 128 NILIKTNCQVAIKALSNPKFTD--NHIRHVLADIIALASTLDYVSCVKVDRLTISPAHIL 187

Query: 294 AVLARKGTSL 295
           A  ARKG ++
Sbjct: 188 ATNARKGMTV 192

[Close]

BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4B6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_108130 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.300e-9
Identity = 68/215 (31.63%), Postives = 96/215 (44.65%), Query Frame = 1


		  
Query: 88  IITTLWAIWVHKNETMFREIEVDTE----IISQINKDRISSWNDSDTHLVTQRKLNLSTH 147
           ++ TLW+IW+H+N  +F+    +      II Q+ KD     N     L    +     H
Sbjct: 155 MVITLWSIWLHRNAVVFKSNTTNPASIMGIIHQMKKDNDLGSNIR-CELAKLARAKKQDH 214

Query: 148 --------WVSGYPSTKRFITILVDASWVEDDKIKPGQSGAAVAYIAEEDDDNSSSRIQG 207
                    V  Y  T+    ++VD +W    K K G S AA+ ++   D +  +   +G
Sbjct: 215 PNPVALIKGVFNYTGTR----LMVDGAW---KKKKNGDSVAAIGWVINHDQNVIA---KG 274

Query: 208 SKRIVAESALQAECYAILYGINEAAKVYKNVIVKSDCLRAIHALTDPEGVPYRSNILPII 267
             RI A S LQAE YAIL G+ EA K     I      R I  L   EG      I  I+
Sbjct: 275 GGRIRAVSGLQAEGYAILRGLKEANKCGCRQITTLSDSRTICKLLQ-EGKDGPIEIASIL 334

Query: 268 KDIRRVASKLHSCACIWVHRDKVCKANDLAVLARK 291
            +I   A     C+ + V RD+V  A+DLA +ARK
Sbjct: 335 SEIIAFAGSFDFCSIVNVSRDRVRPAHDLAYIARK 357

The following BLAST results are available for this feature:

BLAST of Spo28268.1 vs. NCBI nr
BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
BLAST of Spo28268.1 vs. ExPASy Swiss-Prot
BLAST of Spo28268.1 vs. TAIR (Arabidopsis)

BLAST of Spo28268.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902230105\|gb\|KNA21718.1\|	2.3e-164	99.6	hypothetical protein SOVF_0408...	[more]
gi\|902134645\|gb\|KNA04408.1\|	3.2e-20	34.2	hypothetical protein SOVF_2000...	[more]
gi\|870857637\|gb\|KMT09185.1\|	1.7e-18	33.3	hypothetical protein BVRB_6g13...	[more]
gi\|731345826\|ref\|XP_010684120.1\|	5.1e-18	34.4	PREDICTED: uncharacterized pro...	[more]
gi\|731346010\|ref\|XP_010684227.1\|	2.4e-15	30.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo28268.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RQG4_SPIOL	1.6e-164	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0K9QCJ3_SPIOL	2.2e-20	34.2	Uncharacterized protein (Fragm...	[more]
A0A0J8C610_BETVU	1.2e-18	33.3	Uncharacterized protein OS=Bet...	[more]
A0A0K9R6C6_SPIOL	8.2e-15	33.6	Uncharacterized protein OS=Spi...	[more]
A0A0K9R4B6_SPIOL	1.3e-9	31.6	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo28268.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo28268.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 153..241 score: 8.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 154..290 score: 1.2
None	No IPR available	PFAM	PF13456	RVT_3	coord: 177..287 score: 2.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0048481	plant ovule development
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo09321	0.67	Barchart \| Table
Spo21716	0.67	Barchart \| Table
Spo15244	0.65	Barchart \| Table