Spo28302 (gene) | SpinachBase

Overview


Name	Spo28302
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Ring 2
Location	SpoScf_00928 : 103713 .. 104162 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAATTTTGACAAGAATGAGCTTTTCTACATTGCAGGAGTTGGCTTGATGTTAAACATCTTCTTATTTGCTATAACATTGTTGGTTTACCTCTGCAAACCTCGTACAGAAAACACAGACGACATAGAAGCACTTGATCATCTTCATTATTTGAACGTCCCTTTATTACAAGAACACGAAGCAACGAAGGGTTCGAGACTAATCGATCTCATACCGGCCATGAAATTCTTACAAGTGCCACTGTCGAATCGAGGAAACGGGTGTTCGATTTGTTTACAAGAAAGGTATGAAGATGATGAAGTGTGTAAAGTTCTTCCTGGATGTCATCATGTTTTTCATGCTGATTGTATTGATCAATGGTTGAAAAAAAGACAGACTTGTCCTGTTTGTAGAAAGATTTTTCAACTTGTTCTTCCTAAAAATCCTAATACTTGTACATTAGTATGA

mRNA sequence

ATGAGTAATTTTGACAAGAATGAGCTTTTCTACATTGCAGGAGTTGGCTTGATGTTAAACATCTTCTTATTTGCTATAACATTGTTGGTTTACCTCTGCAAACCTCGTACAGAAAACACAGACGACATAGAAGCACTTGATCATCTTCATTATTTGAACGTCCCTTTATTACAAGAACACGAAGCAACGAAGGGTTCGAGACTAATCGATCTCATACCGGCCATGAAATTCTTACAAGTGCCACTGTCGAATCGAGGAAACGGGTGTTCGATTTGTTTACAAGAAAGGTATGAAGATGATGAAGTGTGTAAAGTTCTTCCTGGATGTCATCATGTTTTTCATGCTGATTGTATTGATCAATGGTTGAAAAAAAGACAGACTTGTCCTGTTTGTAGAAAGATTTTTCAACTTGTTCTTCCTAAAAATCCTAATACTTGTACATTAGTATGA

Coding sequence (CDS)

ATGAGTAATTTTGACAAGAATGAGCTTTTCTACATTGCAGGAGTTGGCTTGATGTTAAACATCTTCTTATTTGCTATAACATTGTTGGTTTACCTCTGCAAACCTCGTACAGAAAACACAGACGACATAGAAGCACTTGATCATCTTCATTATTTGAACGTCCCTTTATTACAAGAACACGAAGCAACGAAGGGTTCGAGACTAATCGATCTCATACCGGCCATGAAATTCTTACAAGTGCCACTGTCGAATCGAGGAAACGGGTGTTCGATTTGTTTACAAGAAAGGTATGAAGATGATGAAGTGTGTAAAGTTCTTCCTGGATGTCATCATGTTTTTCATGCTGATTGTATTGATCAATGGTTGAAAAAAAGACAGACTTGTCCTGTTTGTAGAAAGATTTTTCAACTTGTTCTTCCTAAAAATCCTAATACTTGTACATTAGTATGA

Protein sequence

MSNFDKNELFYIAGVGLMLNIFLFAITLLVYLCKPRTENTDDIEALDHLHYLNVPLLQEHEATKGSRLIDLIPAMKFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKRQTCPVCRKIFQLVLPKNPNTCTLV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo28302.1	Spo28302.1	mRNA

Homology

[Close]

BLAST of Spo28302.1 vs. NCBI nr
Match: gi|870861799|gb|KMT13065.1| (hypothetical protein BVRB_4g087040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 191.8 bits (486), Expect = 8.500e-46
Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 1


		  
Query: 1   MSNFDK-NELFYIAGVGLMLNIFLFAITLLVYLCKPRTENTDDIEALD-HLHY----LNV 60
           MS+F+  ++L Y+AGVGL+LNIFLFA TLL+YLCKP T+NTD +EA D HLHY    LNV
Sbjct: 1   MSSFNNTDQLLYVAGVGLLLNIFLFATTLLIYLCKPHTQNTD-LEAFDNHLHYNDDDLNV 60

Query: 61  PLLQEHEA------TK--GSRLIDLIPAMKFLQVPLSN-----RGNGCSICLQERYEDDE 120
            LLQ+ +       TK   SRLIDLIPAMKFLQ+P  +     R NGCSICL+E YEDD+
Sbjct: 61  SLLQQRDDHTDNKYTKVISSRLIDLIPAMKFLQLPKDDHRDSIRRNGCSICLREGYEDDD 120

Query: 121 VCKVLPGCHHVFHADCIDQWLKKRQTCPVCRKIFQLVLP 141
           +CK+LP C HVFH++CIDQWL K+Q+CPVCRKIF++VLP
Sbjct: 121 MCKILPECDHVFHSECIDQWLNKKQSCPVCRKIFRVVLP 158

[Close]

BLAST of Spo28302.1 vs. NCBI nr
Match: gi|695028739|ref|XP_009401758.1| (PREDICTED: RING-H2 finger protein ATL67-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 82.4 bits (202), Expect = 7.300e-13
Identity = 51/130 (39.23%), Postives = 68/130 (52.31%), Query Frame = 1


		  
Query: 12  IAGVGLMLNIFLFAITLLVYLCKPRTENTD------DIEALDHLHYLNVPLLQEHEATKG 71
           + G G+     +F  T L  LC  R  +TD      DIE       L   + Q   +  G
Sbjct: 12  VIGFGMSATFIVFVCTRL--LCS-RIRSTDSRATPLDIE-------LRSDVGQPEHSIGG 71

Query: 72  SR--LIDLIPAMKF-LQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWL 131
               L+D IP MK+ L+   S   N CSICL E YE+ E+ +++P CHH FH  CID WL
Sbjct: 72  LEPVLVDAIPTMKYKLEAFSSREDNQCSICLGE-YEEKEILRIMPSCHHNFHLACIDVWL 130

Query: 132 KKRQTCPVCR 133
           +K+ TCP+CR
Sbjct: 132 QKQTTCPICR 130

[Close]

BLAST of Spo28302.1 vs. NCBI nr
Match: gi|823258377|ref|XP_012461895.1| (PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Gossypium raimondii])

HSP 1 Score: 82.0 bits (201), Expect = 9.500e-13
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 1


		  
Query: 24  FAITLLVYLCKPRTENTDDIEALDHLHYLNVPLLQEHEATKG--SRLIDLIPAMKFLQVP 83
           FA+TL +  C         +++ D+L      L +      G   ++I+ +P  KF  + 
Sbjct: 55  FALTLSLVACTKFCHRGTTVDSGDNLP---TTLRRTKSGFSGIDKKIIESLPFFKFSSIK 114

Query: 84  LSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKRQTCPVCRK 134
            S +G  CS+CL  ++ED EV ++LP C H FH +CID+WL+K  +CP+CR+
Sbjct: 115 GSKQGLECSVCLS-KFEDTEVLRLLPQCKHAFHVECIDEWLEKHSSCPLCRR 162

[Close]

BLAST of Spo28302.1 vs. NCBI nr
Match: gi|747091756|ref|XP_011093623.1| (PREDICTED: E3 ubiquitin-protein ligase ATL42 [Sesamum indicum])

HSP 1 Score: 81.6 bits (200), Expect = 1.200e-12
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1


		  
Query: 18  MLNIFLFAITLLVYLCKPRTENTDDIEALDHLHYLNVPLLQEHEATKG--SRLIDLIPAM 77
           ML+I +FA+T ++ L                 H +   LL+   A  G    +++ +P  
Sbjct: 51  MLSI-MFALTFILLLYAKFCHRASSSGYNTTSHQIQDGLLRSRSAASGLDKTVVESLPFF 110

Query: 78  KFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKRQTCPVCRK 134
           +F  +  S  G  CS+CL  +YED E+ ++LP C H FH  CIDQWL+K  TCP+CR+
Sbjct: 111 RFSSLKGSRDGLECSVCLA-KYEDVEILRLLPKCRHAFHIGCIDQWLEKHSTCPLCRR 166

[Close]

BLAST of Spo28302.1 vs. NCBI nr
Match: gi|470148813|ref|XP_004309943.1| (PREDICTED: RING-H2 finger protein ATL13-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.5 bits (197), Expect = 2.800e-12
Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 1


		  
Query: 28  LLVYLCKPRTENTDDIEALDHLHYLNVPLLQEHEATKGSRLIDLIPAMKFLQVPLSNRGN 87
           L+ +L +P + +TDD+E++  L      L   H+A      ID +P   +  +       
Sbjct: 58  LIRFLLRPPSRDTDDLESVTVLQGQLQQLFHLHDAGVDQSFIDTLPVFNYKAIIGLKNPF 117

Query: 88  GCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKRQTCPVCRKIFQLVLPKNPNTC 147
            C++CL E +E ++  ++LP C H FH +CID WL    TCP+CR        +N NTC
Sbjct: 118 DCAVCLCE-FEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRSTLLPEFSQN-NTC 174

[Close]

BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CH82_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g087040 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.900e-46
Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 1


		  
Query: 1   MSNFDK-NELFYIAGVGLMLNIFLFAITLLVYLCKPRTENTDDIEALD-HLHY----LNV 60
           MS+F+  ++L Y+AGVGL+LNIFLFA TLL+YLCKP T+NTD +EA D HLHY    LNV
Sbjct: 1   MSSFNNTDQLLYVAGVGLLLNIFLFATTLLIYLCKPHTQNTD-LEAFDNHLHYNDDDLNV 60

Query: 61  PLLQEHEA------TK--GSRLIDLIPAMKFLQVPLSN-----RGNGCSICLQERYEDDE 120
            LLQ+ +       TK   SRLIDLIPAMKFLQ+P  +     R NGCSICL+E YEDD+
Sbjct: 61  SLLQQRDDHTDNKYTKVISSRLIDLIPAMKFLQLPKDDHRDSIRRNGCSICLREGYEDDD 120

Query: 121 VCKVLPGCHHVFHADCIDQWLKKRQTCPVCRKIFQLVLP 141
           +CK+LP C HVFH++CIDQWL K+Q+CPVCRKIF++VLP
Sbjct: 121 MCKILPECDHVFHSECIDQWLNKKQSCPVCRKIFRVVLP 158

[Close]

BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
Match: M0T042_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.600e-13
Identity = 51/143 (35.66%), Postives = 70/143 (48.95%), Query Frame = 1


		  
Query: 12  IAGVGLMLNIFLFAITLLVYLCKPRTENTD------DIEALDHLHYLNVPLLQEHEATKG 71
           + G G+     +F  T L  LC  R  +TD      DIE    +  +  PL +     K 
Sbjct: 12  VIGFGMSATFIVFVCTRL--LCS-RIRSTDSRATPLDIELRSDVGQVRRPLSRTLLIAKR 71

Query: 72  SRL---------------IDLIPAMKF-LQVPLSNRGNGCSICLQERYEDDEVCKVLPGC 131
            +L               +D IP MK+ L+   S   N CSICL E YE+ E+ +++P C
Sbjct: 72  KKLPRQPEHSIGGLEPVLVDAIPTMKYKLEAFSSREDNQCSICLGE-YEEKEILRIMPSC 131

Query: 132 HHVFHADCIDQWLKKRQTCPVCR 133
           HH FH  CID WL+K+ TCP+CR
Sbjct: 132 HHNFHLACIDVWLQKQTTCPICR 150

[Close]

BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SIR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G230600 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.600e-13
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 1


		  
Query: 24  FAITLLVYLCKPRTENTDDIEALDHLHYLNVPLLQEHEATKG--SRLIDLIPAMKFLQVP 83
           FA+TL +  C         +++ D+L      L +      G   ++I+ +P  KF  + 
Sbjct: 55  FALTLSLVACTKFCHRGTTVDSGDNLP---TTLRRTKSGFSGIDKKIIESLPFFKFSSIK 114

Query: 84  LSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKRQTCPVCRK 134
            S +G  CS+CL  ++ED EV ++LP C H FH +CID+WL+K  +CP+CR+
Sbjct: 115 GSKQGLECSVCLS-KFEDTEVLRLLPQCKHAFHVECIDEWLEKHSSCPLCRR 162

[Close]

BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
Match: A0A118K756_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009827 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-12
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1


		  
Query: 28  LLVYLCKPRTENTDDIEALDHLHYLNVPLLQEHEATKGSRLIDLIPAMKFLQVPLSNRGN 87
           L+ +L KP T + D+ + +  L      L   H++      ID +P   +  +       
Sbjct: 69  LVRFLVKPSTRDPDEFDNVTALQGQLQQLFTLHDSGVDQSFIDALPVFTYKSIIGVKNPF 128

Query: 88  GCSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKRQTCPVCRKIFQLVLPKNPNTCT 147
            C++CL E +E D+  ++LP C H FH DCID WL    TCP+CR    L+   +PN+C+
Sbjct: 129 DCAVCLCE-FEGDDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRA--NLLSDYSPNSCS 185

[Close]

BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
Match: G7KNZ9_MEDTR (RING-H2 finger protein ATL4J OS=Medicago truncatula GN=MTR_6g087150 PE=4 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-12
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 1


		  
Query: 1   MSNFDKNELFYIAGVGLMLNIFLFAITLLVYLCKPRTENTDDIEALDHLHYLNVPLLQEH 60
           +SNF  + +  IA +GLM ++  F + +   +C  R      +   D  +     L++  
Sbjct: 34  VSNFQPSLVVVIAILGLMFSL-TFILLIFAKVCHRRQL----LPISDDPNNQLATLMRSR 93

Query: 61  EATKG--SRLIDLIPAMKFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHADCI 120
               G     I+ +P  KF  +  S +G  CSICL  ++ED E+ ++LP C H FH DCI
Sbjct: 94  SRFSGIDKTAIESLPFFKFSSLKGSKQGLECSICLS-KFEDIEILRLLPKCKHAFHIDCI 153

Query: 121 DQWLKKRQTCPVCR 133
           D WL+K  +CP+CR
Sbjct: 154 DHWLEKHSSCPICR 161

[Close]

BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
Match: ATL34_ARATH (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-12
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1


		  
Query: 65  GSRLIDLIPAMKFLQVPLSNRGNG---CSICLQERYEDDEVCKVLPGCHHVFHADCIDQW 124
           G  +I+  P+  + QV     G G   C+ICL E +ED+E  +++P C H FHA CID W
Sbjct: 101 GKDVINSFPSFLYSQVKGLKIGKGGVECAICLNE-FEDEETLRLMPPCSHAFHASCIDVW 160

Query: 125 LKKRQTCPVCR 133
           L  R TCPVCR
Sbjct: 161 LSSRSTCPVCR 170

[Close]

BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
Match: ATL37_ARATH (Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana GN=ATL37 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1


		  
Query: 68  LIDLIPAMKFLQVPLSNRGNG---CSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKK 127
           +I+  PA  + +V     GNG   C+ICL E +ED+E  + +P C H FHA+CID+WL  
Sbjct: 96  VIESFPAFLYSEVKAFKIGNGGVECAICLCE-FEDEEPLRWMPPCSHTFHANCIDEWLSS 155

Query: 128 RQTCPVCR 133
           R TCPVCR
Sbjct: 156 RSTCPVCR 162

[Close]

BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
Match: ATL12_ARATH (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-12
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1


		  
Query: 2   SNFDKNELFYIAGVGLMLNIFLFAITLLVYL-C---KPRTENTDDIEALDHLHYLNVPLL 61
           S+  K  L  I GV  +  +F     LLVY  C     R+E   D E + H   L   L 
Sbjct: 34  SDLFKPSLAIITGVFSI--VFTLTFVLLVYAKCFHNDLRSETDSDGERIRH-DRLWQGLF 93

Query: 62  QEHEATKG--SRLIDLIPAMKFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHA 121
                  G   + I+ +P  +F  +    +G  CS+CL  ++ED E+ ++LP C H FH 
Sbjct: 94  NRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLS-KFEDVEILRLLPKCRHAFHI 153

Query: 122 DCIDQWLKKRQTCPVCR 133
            CIDQWL++  TCP+CR
Sbjct: 154 GCIDQWLEQHATCPLCR 166

[Close]

BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.600e-12
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1


		  
Query: 56  LLQEHEATKGSRLIDLIPAMKFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHA 115
           L   H++     LID +P   + ++  +     C++CL E  EDD++ ++LP C H FH 
Sbjct: 111 LFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKL-RLLPNCSHAFHI 170

Query: 116 DCIDQWLKKRQTCPVCR 133
           DCID WL    TCP+CR
Sbjct: 171 DCIDTWLLSNSTCPLCR 186

[Close]

BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
Match: ATL9_ARATH (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.100e-12
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1


		  
Query: 69  IDLIPAMKFLQVPLSNRGNG---CSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKR 128
           I+  P   + +V     G G   C++CL E +EDDE  +++P C HVFHADC+D WL + 
Sbjct: 112 IETFPTFLYSEVKAVRIGKGGVECAVCLCE-FEDDETLRLMPPCCHVFHADCVDVWLSEH 171

Query: 129 QTCPVCR 133
            TCP+CR
Sbjct: 172 STCPLCR 177

[Close]

BLAST of Spo28302.1 vs. TAIR (Arabidopsis)
Match: AT1G35330.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.100e-14
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1


		  
Query: 65  GSRLIDLIPAMKFLQVPLSNRGNG---CSICLQERYEDDEVCKVLPGCHHVFHADCIDQW 124
           G  +I+  P+  + QV     G G   C+ICL E +ED+E  +++P C H FHA CID W
Sbjct: 101 GKDVINSFPSFLYSQVKGLKIGKGGVECAICLNE-FEDEETLRLMPPCSHAFHASCIDVW 160

Query: 125 LKKRQTCPVCR 133
           L  R TCPVCR
Sbjct: 161 LSSRSTCPVCR 170

[Close]

BLAST of Spo28302.1 vs. TAIR (Arabidopsis)
Match: AT4G09130.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.100e-14
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1


		  
Query: 68  LIDLIPAMKFLQVPLSNRGNG---CSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKK 127
           +I+  PA  + +V     GNG   C+ICL E +ED+E  + +P C H FHA+CID+WL  
Sbjct: 96  VIESFPAFLYSEVKAFKIGNGGVECAICLCE-FEDEEPLRWMPPCSHTFHANCIDEWLSS 155

Query: 128 RQTCPVCR 133
           R TCPVCR
Sbjct: 156 RSTCPVCR 162

[Close]

BLAST of Spo28302.1 vs. TAIR (Arabidopsis)
Match: AT2G20030.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.200e-13
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1


		  
Query: 2   SNFDKNELFYIAGVGLMLNIFLFAITLLVYL-C---KPRTENTDDIEALDHLHYLNVPLL 61
           S+  K  L  I GV  +  +F     LLVY  C     R+E   D E + H   L   L 
Sbjct: 34  SDLFKPSLAIITGVFSI--VFTLTFVLLVYAKCFHNDLRSETDSDGERIRH-DRLWQGLF 93

Query: 62  QEHEATKG--SRLIDLIPAMKFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHA 121
                  G   + I+ +P  +F  +    +G  CS+CL  ++ED E+ ++LP C H FH 
Sbjct: 94  NRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSVCLS-KFEDVEILRLLPKCRHAFHI 153

Query: 122 DCIDQWLKKRQTCPVCR 133
            CIDQWL++  TCP+CR
Sbjct: 154 GCIDQWLEQHATCPLCR 166

[Close]

BLAST of Spo28302.1 vs. TAIR (Arabidopsis)
Match: AT1G23980.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-13
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1


		  
Query: 56  LLQEHEATKGSRLIDLIPAMKFLQVPLSNRGNGCSICLQERYEDDEVCKVLPGCHHVFHA 115
           L   H++     LID +P   + ++  +     C++CL E  EDD++ ++LP C H FH 
Sbjct: 111 LFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKL-RLLPNCSHAFHI 170

Query: 116 DCIDQWLKKRQTCPVCR 133
           DCID WL    TCP+CR
Sbjct: 171 DCIDTWLLSNSTCPLCR 186

[Close]

BLAST of Spo28302.1 vs. TAIR (Arabidopsis)
Match: AT2G35000.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.500e-13
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1


		  
Query: 69  IDLIPAMKFLQVPLSNRGNG---CSICLQERYEDDEVCKVLPGCHHVFHADCIDQWLKKR 128
           I+  P   + +V     G G   C++CL E +EDDE  +++P C HVFHADC+D WL + 
Sbjct: 112 IETFPTFLYSEVKAVRIGKGGVECAVCLCE-FEDDETLRLMPPCCHVFHADCVDVWLSEH 171

Query: 129 QTCPVCR 133
            TCP+CR
Sbjct: 172 STCPLCR 177

The following BLAST results are available for this feature:

BLAST of Spo28302.1 vs. NCBI nr
BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
BLAST of Spo28302.1 vs. TAIR (Arabidopsis)

BLAST of Spo28302.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|870861799\|gb\|KMT13065.1\|	8.5e-46	62.8	hypothetical protein BVRB_4g08...	[more]
gi\|695028739\|ref\|XP_009401758.1\|	7.3e-13	39.2	PREDICTED: RING-H2 finger prot...	[more]
gi\|823258377\|ref\|XP_012461895.1\|	9.5e-13	34.8	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|747091756\|ref\|XP_011093623.1\|	1.2e-12	35.5	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|470148813\|ref\|XP_004309943.1\|	2.8e-12	32.7	PREDICTED: RING-H2 finger prot...	[more]

BLAST of Spo28302.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CH82_BETVU	5.9e-46	62.8	Uncharacterized protein OS=Bet...	[more]
M0T042_MUSAM	6.6e-13	35.6	Uncharacterized protein OS=Mus...	[more]
A0A0D2SIR5_GOSRA	6.6e-13	34.8	Uncharacterized protein OS=Gos...	[more]
A0A118K756_CYNCS	3.3e-12	32.5	Uncharacterized protein OS=Cyn...	[more]
G7KNZ9_MEDTR	3.3e-12	33.5	RING-H2 finger protein ATL4J O...	[more]

BLAST of Spo28302.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
ATL34_ARATH	1.6e-12	46.4	RING-H2 finger protein ATL34 O...	[more]
ATL37_ARATH	1.6e-12	48.5	Putative RING-H2 finger protei...	[more]
ATL12_ARATH	2.1e-12	35.0	Putative RING-H2 finger protei...	[more]
ATL47_ARATH	3.6e-12	38.9	RING-H2 finger protein ATL47 O...	[more]
ATL9_ARATH	6.1e-12	44.7	E3 ubiquitin-protein ligase AT...	[more]

BLAST of Spo28302.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G35330.1	9.1e-14	46.4	RING/U-box superfamily protein	[more]
AT4G09130.1	9.1e-14	48.5	RING/U-box superfamily protein	[more]
AT2G20030.1	1.2e-13	35.0	RING/U-box superfamily protein	[more]
AT1G23980.1	2.0e-13	38.9	RING/U-box superfamily protein	[more]
AT2G35000.1	3.5e-13	44.7	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 89..132 score: 5.5
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 89..131 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 89..132 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 86..133 score: 4.9
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 9..132 score: 7.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 88..142 score: 4.54

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10495	0.66	Barchart \| Table