Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTAACAACCCTGTAGTGTCTAGCTATGCCTCACTTCTTAAGAAGAACCCTTCTCCAATTTCCAATGAACCTCAACCTGCCAGCTTACCTAGTGATCCAGGTTCTTCCAGCTTCTTCAGCCACCCCACCCATAACTCCTTTCTCCTGGGAGGTAGCAGTCCTAATCTTGATCCCAATTCCCCACCTAAGGACAGCTCACACAATACTGCACCACAGGTTCCTGGTTCGAATAATGCCACCATCACCTTAGATGCCCCTAAACTTGACAATGAGCAAATCAAGCTTATGGAAGCAACCTGTCTTTTTGGGAAAGTATGGGGGGAATTTGTGCCACAAGCTGCTGTCATAGCTAGGATGAAGAAAGACTGGTCTTTTATGAGGGGTGAGGCTTCTTTTAGGTTCATTGGGAATGGTTGGTTTCTCATTAAGTTCTCTAACCCCCTTGACAAGGATGAGGTGTGGGAGGGTAGACCTTGGTTTGTGCAGGGTTTAAACTTTGTTCTTTTGCCTTGGAGAGCCTCCTTTAAAGCTCAGTTTAGTTCCATTACCCATGTAGACCAATGGGTGAAAATCCCTTTTCTCCCCACTGAATACTGGACTTGGCACTACCTTAACCAGATTTCCAGTTGTGTTGGTCAGCCCATCAAACTAGATAAGTTTACCTCTGAGAACACAGAAAAGGGTCAGTTTGCTAGAGTGTGTCTCAACCTCAATATAACCAAGCCTGTTCCTAGGTCTATCACTCTAAACTTTGGCTATGACATCCAGGAGTACTTCTTGTCTTATGAAGGTGTCTGGGAGGTTTTCCCTCTTTGTGGTGATCCAAACCATTTTCTGAATGCTTGTCCTAAGAGGCCTCCTCCTTGCCTTAAGCTGGTTGTGGCTCAACTGGATGAGGCTAAACTGTCTATGGGGGTGCCTGGGGATAGTGGAGGGCAAGCCACTCCTTCTGACTGGTTGGCTGTGGTGCCAAGGAGAAGAGCCAAGCCCAGAAGCAATATAAGAAAGACCCATGCCAAGCCTTATCATCATCCCCCTCCTGTACAGACTAGACCATTACCCTCCCCTTCTCAAGGATTGGGTGCTGGTTTGCCTGTCATTCCTCTAGCCAACAGCTTTCAGGGGCTGCAGGATTTTCAAGTGTCTACTGGTGACACCATTACTCTCAATCCACCTGCTGTCCAACCCTATGAGGATATTCTTCCTGATTTTGACCCACTAGAGCTTGCTCCTCATGGTGTCAAGGATGTTCAGGGGGATGATGAGCTTGATATGGACCTGGAGATTTATGATGGTGATGGTTTTGACGAAAATGACCCAGTTTTTTCTGACTGCACACCTCCCATGGAAGCTGAGAACTCTAAGAGAAGGAACAGAGGTGATGGTGATCTCTCTCCTTCTCCTTCTGCTGGATGA ATGTCTAACAACCCTGTAGTGTCTAGCTATGCCTCACTTCTTAAGAAGAACCCTTCTCCAATTTCCAATGAACCTCAACCTGCCAGCTTACCTAGTGATCCAGGTTCTTCCAGCTTCTTCAGCCACCCCACCCATAACTCCTTTCTCCTGGGAGGTAGCAGTCCTAATCTTGATCCCAATTCCCCACCTAAGGACAGCTCACACAATACTGCACCACAGGTTCCTGGTTCGAATAATGCCACCATCACCTTAGATGCCCCTAAACTTGACAATGAGCAAATCAAGCTTATGGAAGCAACCTGTCTTTTTGGGAAAGTATGGGGGGAATTTGTGCCACAAGCTGCTGTCATAGCTAGGATGAAGAAAGACTGGTCTTTTATGAGGGGTGAGGCTTCTTTTAGGTTCATTGGGAATGGTTGGTTTCTCATTAAGTTCTCTAACCCCCTTGACAAGGATGAGGTGTGGGAGGGTAGACCTTGGTTTGTGCAGGGTTTAAACTTTGTTCTTTTGCCTTGGAGAGCCTCCTTTAAAGCTCAGTTTAGTTCCATTACCCATGTAGACCAATGGGTGAAAATCCCTTTTCTCCCCACTGAATACTGGACTTGGCACTACCTTAACCAGATTTCCAGTTGTGTTGGTCAGCCCATCAAACTAGATAAGTTTACCTCTGAGAACACAGAAAAGGGTCAGTTTGCTAGAGTGTGTCTCAACCTCAATATAACCAAGCCTGTTCCTAGGTCTATCACTCTAAACTTTGGCTATGACATCCAGGAGTACTTCTTGTCTTATGAAGGTGTCTGGGAGGTTTTCCCTCTTTGTGGTGATCCAAACCATTTTCTGAATGCTTGTCCTAAGAGGCCTCCTCCTTGCCTTAAGCTGGTTGTGGCTCAACTGGATGAGGCTAAACTGTCTATGGGGGTGCCTGGGGATAGTGGAGGGCAAGCCACTCCTTCTGACTGGTTGGCTGTGGTGCCAAGGAGAAGAGCCAAGCCCAGAAGCAATATAAGAAAGACCCATGCCAAGCCTTATCATCATCCCCCTCCTGTACAGACTAGACCATTACCCTCCCCTTCTCAAGGATTGGGTGCTGGTTTGCCTGTCATTCCTCTAGCCAACAGCTTTCAGGGGCTGCAGGATTTTCAAGTGTCTACTGGTGACACCATTACTCTCAATCCACCTGCTGTCCAACCCTATGAGGATATTCTTCCTGATTTTGACCCACTAGAGCTTGCTCCTCATGGTGTCAAGGATGTTCAGGGGGATGATGAGCTTGATATGGACCTGGAGATTTATGATGGTGATGGTTTTGACGAAAATGACCCAGTTTTTTCTGACTGCACACCTCCCATGGAAGCTGAGAACTCTAAGAGAAGGAACAGAGGTGATGGTGATCTCTCTCCTTCTCCTTCTGCTGGATGA ATGTCTAACAACCCTGTAGTGTCTAGCTATGCCTCACTTCTTAAGAAGAACCCTTCTCCAATTTCCAATGAACCTCAACCTGCCAGCTTACCTAGTGATCCAGGTTCTTCCAGCTTCTTCAGCCACCCCACCCATAACTCCTTTCTCCTGGGAGGTAGCAGTCCTAATCTTGATCCCAATTCCCCACCTAAGGACAGCTCACACAATACTGCACCACAGGTTCCTGGTTCGAATAATGCCACCATCACCTTAGATGCCCCTAAACTTGACAATGAGCAAATCAAGCTTATGGAAGCAACCTGTCTTTTTGGGAAAGTATGGGGGGAATTTGTGCCACAAGCTGCTGTCATAGCTAGGATGAAGAAAGACTGGTCTTTTATGAGGGGTGAGGCTTCTTTTAGGTTCATTGGGAATGGTTGGTTTCTCATTAAGTTCTCTAACCCCCTTGACAAGGATGAGGTGTGGGAGGGTAGACCTTGGTTTGTGCAGGGTTTAAACTTTGTTCTTTTGCCTTGGAGAGCCTCCTTTAAAGCTCAGTTTAGTTCCATTACCCATGTAGACCAATGGGTGAAAATCCCTTTTCTCCCCACTGAATACTGGACTTGGCACTACCTTAACCAGATTTCCAGTTGTGTTGGTCAGCCCATCAAACTAGATAAGTTTACCTCTGAGAACACAGAAAAGGGTCAGTTTGCTAGAGTGTGTCTCAACCTCAATATAACCAAGCCTGTTCCTAGGTCTATCACTCTAAACTTTGGCTATGACATCCAGGAGTACTTCTTGTCTTATGAAGGTGTCTGGGAGGTTTTCCCTCTTTGTGGTGATCCAAACCATTTTCTGAATGCTTGTCCTAAGAGGCCTCCTCCTTGCCTTAAGCTGGTTGTGGCTCAACTGGATGAGGCTAAACTGTCTATGGGGGTGCCTGGGGATAGTGGAGGGCAAGCCACTCCTTCTGACTGGTTGGCTGTGGTGCCAAGGAGAAGAGCCAAGCCCAGAAGCAATATAAGAAAGACCCATGCCAAGCCTTATCATCATCCCCCTCCTGTACAGACTAGACCATTACCCTCCCCTTCTCAAGGATTGGGTGCTGGTTTGCCTGTCATTCCTCTAGCCAACAGCTTTCAGGGGCTGCAGGATTTTCAAGTGTCTACTGGTGACACCATTACTCTCAATCCACCTGCTGTCCAACCCTATGAGGATATTCTTCCTGATTTTGACCCACTAGAGCTTGCTCCTCATGGTGTCAAGGATGTTCAGGGGGATGATGAGCTTGATATGGACCTGGAGATTTATGATGGTGATGGTTTTGACGAAAATGACCCAGTTTTTTCTGACTGCACACCTCCCATGGAAGCTGAGAACTCTAAGAGAAGGAACAGAGGTGATGGTGATCTCTCTCCTTCTCCTTCTGCTGGATGA MSNNPVVSSYASLLKKNPSPISNEPQPASLPSDPGSSSFFSHPTHNSFLLGGSSPNLDPNSPPKDSSHNTAPQVPGSNNATITLDAPKLDNEQIKLMEATCLFGKVWGEFVPQAAVIARMKKDWSFMRGEASFRFIGNGWFLIKFSNPLDKDEVWEGRPWFVQGLNFVLLPWRASFKAQFSSITHVDQWVKIPFLPTEYWTWHYLNQISSCVGQPIKLDKFTSENTEKGQFARVCLNLNITKPVPRSITLNFGYDIQEYFLSYEGVWEVFPLCGDPNHFLNACPKRPPPCLKLVVAQLDEAKLSMGVPGDSGGQATPSDWLAVVPRRRAKPRSNIRKTHAKPYHHPPPVQTRPLPSPSQGLGAGLPVIPLANSFQGLQDFQVSTGDTITLNPPAVQPYEDILPDFDPLELAPHGVKDVQGDDELDMDLEIYDGDGFDENDPVFSDCTPPMEAENSKRRNRGDGDLSPSPSAG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo28323.1 vs. NCBI nr
Match: gi|870844465|gb|KMS97428.1| (hypothetical protein BVRB_5g127080 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 184.5 bits (467), Expect = 4.300e-43 Identity = 109/344 (31.69%), Postives = 184/344 (53.49%), Query Frame = 1
BLAST of Spo28323.1 vs. NCBI nr
Match: gi|731367861|ref|XP_010695834.1| (PREDICTED: uncharacterized protein LOC104908415 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 160.6 bits (405), Expect = 6.600e-36 Identity = 96/277 (34.66%), Postives = 152/277 (54.87%), Query Frame = 1
BLAST of Spo28323.1 vs. NCBI nr
Match: gi|731330418|ref|XP_010676122.1| (PREDICTED: uncharacterized protein LOC104892012 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 137.9 bits (346), Expect = 4.600e-29 Identity = 74/221 (33.48%), Postives = 116/221 (52.49%), Query Frame = 1
BLAST of Spo28323.1 vs. NCBI nr
Match: gi|731358351|ref|XP_010690695.1| (PREDICTED: uncharacterized protein LOC104904196 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 134.4 bits (337), Expect = 5.100e-28 Identity = 75/231 (32.47%), Postives = 118/231 (51.08%), Query Frame = 1
BLAST of Spo28323.1 vs. NCBI nr
Match: gi|731345880|ref|XP_010684152.1| (PREDICTED: uncharacterized protein LOC104898749 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 129.4 bits (324), Expect = 1.600e-26 Identity = 68/190 (35.79%), Postives = 98/190 (51.58%), Query Frame = 1
BLAST of Spo28323.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBN1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g127080 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 3.000e-43 Identity = 109/344 (31.69%), Postives = 184/344 (53.49%), Query Frame = 1
BLAST of Spo28323.1 vs. UniProtKB/TrEMBL
Match: F4NCG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 3.200e-29 Identity = 74/221 (33.48%), Postives = 116/221 (52.49%), Query Frame = 1
BLAST of Spo28323.1 vs. UniProtKB/TrEMBL
Match: R0HW75_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10015822mg PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.200e-22 Identity = 65/213 (30.52%), Postives = 107/213 (50.23%), Query Frame = 1
BLAST of Spo28323.1 vs. UniProtKB/TrEMBL
Match: A5AT31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006250 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 3.800e-22 Identity = 74/238 (31.09%), Postives = 117/238 (49.16%), Query Frame = 1
BLAST of Spo28323.1 vs. UniProtKB/TrEMBL
Match: R0FTP5_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10019240mg PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.400e-21 Identity = 66/236 (27.97%), Postives = 119/236 (50.42%), Query Frame = 1
BLAST of Spo28323.1 vs. TAIR (Arabidopsis)
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding) HSP 1 Score: 106.3 bits (264), Expect = 5.200e-23 Identity = 62/238 (26.05%), Postives = 116/238 (48.74%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo28323.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo28323.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo28323.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo28323.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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