Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTCCCTGTAGGATTCTCTCTTATTATTTTATGTCTCCTCCCTCCATCAACACTCTCCACCTCTGACAACCACCACCACCAAGATGGTAACTCGCCAATACTAAAATCCCTACATTTCACACTCTACATACACGAAACCTACAACAAAACTGCCTACGTCACAATCAAAGGTGTTGCTGGTCCAAAACGCTTCACCAAAACCTCAAACCCCTTTGGGTCTCTAGTAGCCTTCAACGACCCTCTCACTGAAACAGAAGATCCCTTCTCTAAAGTCCTAGGTTACATGGAGGGATCAGCAGTCACCTCTAGCTTTGATGGGGGTCGAACAACTTGCATTTGCAGGACTAGTTTGAACTTTAAAGGATACAAAGGGGACCTGTTGAATGTAGGGACTGCTTACTATACTCAGGTTTCGGAACTTCCCCTTGTTGGCGGTACAGGGGATTTTAGGTTTGTTCAGGGTTACATGACATTTTCTGTGGTTGATCTTAGTGGTCCTGCTGCTTGTTACAAGACTGACTTTCATTTGTATTGGCCTCCTTATGCTACTAGCCTAATACCATAA ATGGATTTCCCTGTAGGATTCTCTCTTATTATTTTATGTCTCCTCCCTCCATCAACACTCTCCACCTCTGACAACCACCACCACCAAGATGGTAACTCGCCAATACTAAAATCCCTACATTTCACACTCTACATACACGAAACCTACAACAAAACTGCCTACGTCACAATCAAAGGTGTTGCTGGTCCAAAACGCTTCACCAAAACCTCAAACCCCTTTGGGTCTCTAGTAGCCTTCAACGACCCTCTCACTGAAACAGAAGATCCCTTCTCTAAAGTCCTAGGTTACATGGAGGGATCAGCAGTCACCTCTAGCTTTGATGGGGGTCGAACAACTTGCATTTGCAGGACTAGTTTGAACTTTAAAGGATACAAAGGGGACCTGTTGAATGTAGGGACTGCTTACTATACTCAGGTTTCGGAACTTCCCCTTGTTGGCGGTACAGGGGATTTTAGGTTTGTTCAGGGTTACATGACATTTTCTGTGGTTGATCTTAGTGGTCCTGCTGCTTGTTACAAGACTGACTTTCATTTGTATTGGCCTCCTTATGCTACTAGCCTAATACCATAA ATGGATTTCCCTGTAGGATTCTCTCTTATTATTTTATGTCTCCTCCCTCCATCAACACTCTCCACCTCTGACAACCACCACCACCAAGATGGTAACTCGCCAATACTAAAATCCCTACATTTCACACTCTACATACACGAAACCTACAACAAAACTGCCTACGTCACAATCAAAGGTGTTGCTGGTCCAAAACGCTTCACCAAAACCTCAAACCCCTTTGGGTCTCTAGTAGCCTTCAACGACCCTCTCACTGAAACAGAAGATCCCTTCTCTAAAGTCCTAGGTTACATGGAGGGATCAGCAGTCACCTCTAGCTTTGATGGGGGTCGAACAACTTGCATTTGCAGGACTAGTTTGAACTTTAAAGGATACAAAGGGGACCTGTTGAATGTAGGGACTGCTTACTATACTCAGGTTTCGGAACTTCCCCTTGTTGGCGGTACAGGGGATTTTAGGTTTGTTCAGGGTTACATGACATTTTCTGTGGTTGATCTTAGTGGTCCTGCTGCTTGTTACAAGACTGACTTTCATTTGTATTGGCCTCCTTATGCTACTAGCCTAATACCATAA MDFPVGFSLIILCLLPPSTLSTSDNHHHQDGNSPILKSLHFTLYIHETYNKTAYVTIKGVAGPKRFTKTSNPFGSLVAFNDPLTETEDPFSKVLGYMEGSAVTSSFDGGRTTCICRTSLNFKGYKGDLLNVGTAYYTQVSELPLVGGTGDFRFVQGYMTFSVVDLSGPAACYKTDFHLYWPPYATSLIP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo28381.1 vs. NCBI nr
Match: gi|902184083|gb|KNA10239.1| (hypothetical protein SOVF_146010 [Spinacia oleracea]) HSP 1 Score: 396.0 bits (1016), Expect = 3.800e-107 Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 1
BLAST of Spo28381.1 vs. NCBI nr
Match: gi|870845891|gb|KMS98543.1| (hypothetical protein BVRB_4g092320 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 258.1 bits (658), Expect = 1.200e-65 Identity = 126/178 (70.79%), Postives = 143/178 (80.34%), Query Frame = 1
BLAST of Spo28381.1 vs. NCBI nr
Match: gi|902147710|gb|KNA05177.1| (hypothetical protein SOVF_192740 [Spinacia oleracea]) HSP 1 Score: 252.7 bits (644), Expect = 5.100e-64 Identity = 119/178 (66.85%), Postives = 135/178 (75.84%), Query Frame = 1
BLAST of Spo28381.1 vs. NCBI nr
Match: gi|1009144088|ref|XP_015889608.1| (PREDICTED: dirigent protein 19-like [Ziziphus jujuba]) HSP 1 Score: 183.0 bits (463), Expect = 5.000e-43 Identity = 87/176 (49.43%), Postives = 118/176 (67.05%), Query Frame = 1
BLAST of Spo28381.1 vs. NCBI nr
Match: gi|1012125517|ref|XP_015963531.1| (PREDICTED: dirigent protein 19-like [Arachis duranensis]) HSP 1 Score: 180.3 bits (456), Expect = 3.200e-42 Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = 1
BLAST of Spo28381.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_146010 PE=4 SV=1) HSP 1 Score: 396.0 bits (1016), Expect = 2.600e-107 Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 1
BLAST of Spo28381.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEV5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092320 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 8.500e-66 Identity = 126/178 (70.79%), Postives = 143/178 (80.34%), Query Frame = 1
BLAST of Spo28381.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QD33_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192740 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 3.600e-64 Identity = 119/178 (66.85%), Postives = 135/178 (75.84%), Query Frame = 1
BLAST of Spo28381.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJV7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_170950 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 5.600e-41 Identity = 86/181 (47.51%), Postives = 119/181 (65.75%), Query Frame = 1
BLAST of Spo28381.1 vs. UniProtKB/TrEMBL
Match: G7L9F0_MEDTR (Disease resistance-responsive, dirigent domain protein OS=Medicago truncatula GN=MTR_8g073770 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 9.500e-41 Identity = 83/176 (47.16%), Postives = 115/176 (65.34%), Query Frame = 1
BLAST of Spo28381.1 vs. ExPASy Swiss-Prot
Match: DIR2_ARATH (Dirigent protein 2 OS=Arabidopsis thaliana GN=DIR2 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.600e-9 Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 1
BLAST of Spo28381.1 vs. ExPASy Swiss-Prot
Match: DIR1_ARATH (Dirigent protein 1 OS=Arabidopsis thaliana GN=DIR1 PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.400e-8 Identity = 40/134 (29.85%), Postives = 64/134 (47.76%), Query Frame = 1
BLAST of Spo28381.1 vs. ExPASy Swiss-Prot
Match: DIR19_ARATH (Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.000e-7 Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 1
BLAST of Spo28381.1 vs. ExPASy Swiss-Prot
Match: DIR11_ARATH (Dirigent protein 11 OS=Arabidopsis thaliana GN=DIR11 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.400e-7 Identity = 45/171 (26.32%), Postives = 75/171 (43.86%), Query Frame = 1
BLAST of Spo28381.1 vs. TAIR (Arabidopsis)
Match: AT5G42500.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 63.2 bits (152), Expect = 2.000e-10 Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 1
BLAST of Spo28381.1 vs. TAIR (Arabidopsis)
Match: AT5G42510.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 61.2 bits (147), Expect = 7.700e-10 Identity = 40/134 (29.85%), Postives = 64/134 (47.76%), Query Frame = 1
BLAST of Spo28381.1 vs. TAIR (Arabidopsis)
Match: AT1G58170.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 57.4 bits (137), Expect = 1.100e-8 Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 1
BLAST of Spo28381.1 vs. TAIR (Arabidopsis)
Match: AT1G22900.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 56.6 bits (135), Expect = 1.900e-8 Identity = 45/171 (26.32%), Postives = 75/171 (43.86%), Query Frame = 1
BLAST of Spo28381.1 vs. TAIR (Arabidopsis)
Match: AT2G21100.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 51.6 bits (122), Expect = 6.100e-7 Identity = 44/158 (27.85%), Postives = 72/158 (45.57%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo28381.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo28381.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo28381.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo28381.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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