Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTAAGATGTACAAAACATCATTTTAAAACATCCAACACAAAAGCCAAATGAAATTATGAAACAACCGATCTAACCATCCAAACGACACAGCGGACAGCCCATCACCAAGCGATTCAAGCCAATGAGTGTTGTATGTTTTGCCTGTCTTCTTTCTCTGAATCTCCGCCTTTGGCGCGAGGAAACCATGGACCATTTGTTCATCCCTCATTCGGACAATGCATGGACAATAGAAGGTCTGAAACCCAGTAACTAAGACAGTTCATGGTATTGCACTAACTCACTAAATCCAAACAACATCGTTTTCCCTTTCCTTTTCACTACCAATCAAAACCTCTGTTGCATTTATAACACCACAAACAAATAAAATGTGCTAAAAAAAAATCTTCTGCAACTTCCACCTTTCTAATTACAGTAACAATGGTGGTGGTTGCAACAATCTCTCAACTGTCCCTACAATTCCCACCAAAACATACCCAATTCAAACCCATTTACCCACCAAAACCCAGGTCCCAAGTTTTCTGTTGCTTGTCAATTGACCCTCCAACACTTGAATCTTCCAATGTAGAGGAGAGAAAGGGGAAGCAATTAAGAGTTGTTTTTGCCGCCGGCGGAGCTGGGGGGCAGATATTCCCTGCTGTAGCAATTGCAGATGAGATCAGGATTATAAACCCAGATGCACAAATTCTATTTATTGGTACTGATGCAGGGATGGAGAGCACGGCGGTGCCGGCTTCCGGATACGAATTTTCCGCCATACCCGCCACCCCATTAAGCCGGCCGATTTTATCTGTAAACAATTTGAGTATTCCTTTGAAATGGGTGAAGTCAATGGCTGCAAGTTGGAAGATAATGAAAGATTTCAAACCCGAAATTGTGGTTGGAACTGGGGGTTATGTGTCTTTCCCAATTTGCCTAATTGCTGCTATTAAAGGGTTGAGAATGGTGATCCAAGAACAAAGC AGTAAGATGTACAAAACATCATTTTAAAACATCCAACACAAAAGCCAAATGAAATTATGAAACAACCGATCTAACCATCCAAACGACACAGCGGACAGCCCATCACCAAGCGATTCAAGCCAATGAGTGTTGTATGTTTTGCCTGTCTTCTTTCTCTGAATCTCCGCCTTTGGCGCGAGGAAACCATGGACCATTTGTTCATCCCTCATTCGGACAATGCATGGACAATAGAAGGTCTGAAACCCAGTAACTAAGACAGTTCATGGTATTGCACTAACTCACTAAATCCAAACAACATCGTTTTCCCTTTCCTTTTCACTACCAATCAAAACCTCTGTTGCATTTATAACACCACAAACAAATAAAATGTGCTAAAAAAAAATCTTCTGCAACTTCCACCTTTCTAATTACAGTAACAATGGTGGTGGTTGCAACAATCTCTCAACTGTCCCTACAATTCCCACCAAAACATACCCAATTCAAACCCATTTACCCACCAAAACCCAGGTCCCAAGTTTTCTGTTGCTTGTCAATTGACCCTCCAACACTTGAATCTTCCAATGTAGAGGAGAGAAAGGGGAAGCAATTAAGAGTTGTTTTTGCCGCCGGCGGAGCTGGGGGGCAGATATTCCCTGCTGTAGCAATTGCAGATGAGATCAGGATTATAAACCCAGATGCACAAATTCTATTTATTGGTACTGATGCAGGGATGGAGAGCACGGCGGTGCCGGCTTCCGGATACGAATTTTCCGCCATACCCGCCACCCCATTAAGCCGGCCGATTTTATCTGTAAACAATTTGAGTATTCCTTTGAAATGGGTGAAGTCAATGGCTGCAAGTTGGAAGATAATGAAAGATTTCAAACCCGAAATTGTGGTTGGAACTGGGGGTTATGTGTCTTTCCCAATTTGCCTAATTGCTGCTATTAAAGGGTTGAGAATGGTGATCCAAGAACAAAGC ATGGTGGTGGTTGCAACAATCTCTCAACTGTCCCTACAATTCCCACCAAAACATACCCAATTCAAACCCATTTACCCACCAAAACCCAGGTCCCAAGTTTTCTGTTGCTTGTCAATTGACCCTCCAACACTTGAATCTTCCAATGTAGAGGAGAGAAAGGGGAAGCAATTAAGAGTTGTTTTTGCCGCCGGCGGAGCTGGGGGGCAGATATTCCCTGCTGTAGCAATTGCAGATGAGATCAGGATTATAAACCCAGATGCACAAATTCTATTTATTGGTACTGATGCAGGGATGGAGAGCACGGCGGTGCCGGCTTCCGGATACGAATTTTCCGCCATACCCGCCACCCCATTAAGCCGGCCGATTTTATCTGTAAACAATTTGAGTATTCCTTTGAAATGGGTGAAGTCAATGGCTGCAAGTTGGAAGATAATGAAAGATTTCAAACCCGAAATTGTGGTTGGAACTGGGGGTTATGTGTCTTTCCCAATTTGCCTAATTGCTGCTATTAAAGGGTTGAGAATGGTGATCCAAGAACAAAGC MVVVATISQLSLQFPPKHTQFKPIYPPKPRSQVFCCLSIDPPTLESSNVEERKGKQLRVVFAAGGAGGQIFPAVAIADEIRIINPDAQILFIGTDAGMESTAVPASGYEFSAIPATPLSRPILSVNNLSIPLKWVKSMAASWKIMKDFKPEIVVGTGGYVSFPICLIAAIKGLRMVIQEQS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo28451.1 vs. NCBI nr
Match: gi|902222963|gb|KNA19339.1| (hypothetical protein SOVF_062500 [Spinacia oleracea]) HSP 1 Score: 359.0 bits (920), Expect = 4.900e-96 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo28451.1 vs. NCBI nr
Match: gi|731367499|ref|XP_010695645.1| (PREDICTED: uncharacterized protein LOC104908248 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 256.5 bits (654), Expect = 3.400e-65 Identity = 125/174 (71.84%), Postives = 150/174 (86.21%), Query Frame = 1
BLAST of Spo28451.1 vs. NCBI nr
Match: gi|297734253|emb|CBI15500.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 191.0 bits (484), Expect = 1.800e-45 Identity = 100/187 (53.48%), Postives = 137/187 (73.26%), Query Frame = 1
BLAST of Spo28451.1 vs. NCBI nr
Match: gi|731426505|ref|XP_010663641.1| (PREDICTED: uncharacterized protein LOC100242239 [Vitis vinifera]) HSP 1 Score: 191.0 bits (484), Expect = 1.800e-45 Identity = 100/187 (53.48%), Postives = 137/187 (73.26%), Query Frame = 1
BLAST of Spo28451.1 vs. NCBI nr
Match: gi|719961494|ref|XP_010268482.1| (PREDICTED: uncharacterized protein LOC104605180 [Nelumbo nucifera]) HSP 1 Score: 180.6 bits (457), Expect = 2.400e-42 Identity = 88/171 (51.46%), Postives = 123/171 (71.93%), Query Frame = 1
BLAST of Spo28451.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK91_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_062500 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 3.400e-96 Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
BLAST of Spo28451.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E380_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126230 PE=3 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 2.400e-65 Identity = 125/174 (71.84%), Postives = 150/174 (86.21%), Query Frame = 1
BLAST of Spo28451.1 vs. UniProtKB/TrEMBL
Match: D7SJ39_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03190 PE=3 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 1.200e-45 Identity = 100/187 (53.48%), Postives = 137/187 (73.26%), Query Frame = 1
BLAST of Spo28451.1 vs. UniProtKB/TrEMBL
Match: A0A068TQ71_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022481001 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 3.800e-39 Identity = 85/149 (57.05%), Postives = 113/149 (75.84%), Query Frame = 1
BLAST of Spo28451.1 vs. UniProtKB/TrEMBL
Match: V4TVR6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020201mg PE=3 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.500e-38 Identity = 84/148 (56.76%), Postives = 108/148 (72.97%), Query Frame = 1
BLAST of Spo28451.1 vs. ExPASy Swiss-Prot
Match: MURG_DESAP (UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Desulforudis audaxviator (strain MP104C) GN=murG PE=3 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.500e-25 Identity = 58/125 (46.40%), Postives = 87/125 (69.60%), Query Frame = 1
BLAST of Spo28451.1 vs. ExPASy Swiss-Prot
Match: MURG_GRAFK (UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Gramella forsetii (strain KT0803) GN=murG PE=3 SV=1) HSP 1 Score: 111.7 bits (278), Expect = 8.500e-24 Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = 1
BLAST of Spo28451.1 vs. ExPASy Swiss-Prot
Match: MURG_BACFR (UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Bacteroides fragilis (strain YCH46) GN=murG PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 1.900e-23 Identity = 56/138 (40.58%), Postives = 85/138 (61.59%), Query Frame = 1
BLAST of Spo28451.1 vs. ExPASy Swiss-Prot
Match: MURG_BACFN (UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) GN=murG PE=3 SV=2) HSP 1 Score: 110.5 bits (275), Expect = 1.900e-23 Identity = 56/138 (40.58%), Postives = 85/138 (61.59%), Query Frame = 1
BLAST of Spo28451.1 vs. ExPASy Swiss-Prot
Match: MURG_ALKOO (UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=murG PE=3 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 1.900e-23 Identity = 55/125 (44.00%), Postives = 87/125 (69.60%), Query Frame = 1
BLAST of Spo28451.1 vs. TAIR (Arabidopsis)
Match: AT1G73740.1 (UDP-Glycosyltransferase superfamily protein) HSP 1 Score: 127.5 bits (319), Expect = 8.400e-30 Identity = 76/173 (43.93%), Postives = 103/173 (59.54%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo28451.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo28451.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo28451.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo28451.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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