Spo00082.1 (mRNA) | SpinachBase

Overview


Name	Spo00082.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Histone H2A
Location	Super_scaffold_70 : 683453 .. 684742 (+)
Sequence length	1125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTGGCGGGATTCCAATTGACAAAACCAAAATTCAAGCAATTTTGATAGTCGGTTCTGATTGGTCCATTCAAAAGCACACGGATCGCAACCAAAACAAATCCTCACCCGTAGATACACCCTAATCCAACGGTTAAAAACCCAACAATTAAATCTCCCCCCAAAACCCACCACCAACATCTCCCATTTCTACCATCCCCCTTCCACTATATAAACCTCTCCCTCCATCATAAACTTCCATCTCACTTCAAAATCTTCATTATCTCTCTCTCTCCTCTATAACTCTCAACTTTCTCTCACTAGAAGTTTCTCAAAAATCTCCAAATCTAGAAAATGGATTCAGCAGCAGGAGGAAAGGGTAAGAAGGGAGCAGCAGGAAGGAAGGGCGGAGGCCCCAAGAAGAAGTCGGTTACTCGCTCCGTCAAAGCTGGGTTACAGTTTCCAGTCGGAAGAATTGGGCGTTTCTTAAAGAAGGGTCGTTATGCTCAGCGTGTTGGTTCTGGTGCTCCTGTTTACCTAGCCGCTGTTCTTGAGTACCTTGCTGCTGAGGTAGTTTCTCTCTCCTAACTCATTTCAATTTTCCGATTGTTTCTGTTAATTTGTCTGAATCTGAATCTGTTTTGTACATAGTTGTTGATTAATTCACAGATTTAATTGAAAAATGAATTGATTTTGGATCTGGATTCTAAGTTTTGATTTAATTGTAAAATGAAGGTATTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGTCAAGGATAATCCCAAGGCACGTTCTTCTAGCAGTAAGGAACGATGATGAGCTCGGAAAATTGCTAGCAGGAGTTACAATTGCTCATGGAGGAGTCCTACCAAACATCAACCCAATATTGTTGCCAAAGAAGACAGCAGAAAAGGCTCCCAAGGAAGCCAAGCCTTCGACCAAGGCTGCCAAATCCCCTAAGAAAGCATAGGATGTTTATCGTTTCTGGTCCAAGTTAGAAAGATGGATGGTTTGTTGGGTTTTGATTTACTGCATTTTGTATCTACTGTTAGTACGAGTTCTAGTTAGGGTTTTTAATGAAATAGGAAGGTTGTATTAGTAATGGGTTGAATAGGAATTGGATCAATATCTGATTGGTCTATTTTCTGTAATCATATGGTTATTAATCAAAAATATTTATTTCTCCTACTTACGTTTGTTATCTATTGCTTCTTTAGCCCTGTCAATTGAAATTGAATTTTACTTGAAGTTTCACCTTTGTAATAAACTAAATTTCAATTAATCAATCAAATTGAAGTTTCACC

mRNA sequence

AAGTGGCGGGATTCCAATTGACAAAACCAAAATTCAAGCAATTTTGATAGTCGGTTCTGATTGGTCCATTCAAAAGCACACGGATCGCAACCAAAACAAATCCTCACCCGTAGATACACCCTAATCCAACGGTTAAAAACCCAACAATTAAATCTCCCCCCAAAACCCACCACCAACATCTCCCATTTCTACCATCCCCCTTCCACTATATAAACCTCTCCCTCCATCATAAACTTCCATCTCACTTCAAAATCTTCATTATCTCTCTCTCTCCTCTATAACTCTCAACTTTCTCTCACTAGAAGTTTCTCAAAAATCTCCAAATCTAGAAAATGGATTCAGCAGCAGGAGGAAAGGGTAAGAAGGGAGCAGCAGGAAGGAAGGGCGGAGGCCCCAAGAAGAAGTCGGTTACTCGCTCCGTCAAAGCTGGGTTACAGTTTCCAGTCGGAAGAATTGGGCGTTTCTTAAAGAAGGGTCGTTATGCTCAGCGTGTTGGTTCTGGTGCTCCTGTTTACCTAGCCGCTGTTCTTGAGTACCTTGCTGCTGAGGTATTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGTCAAGGATAATCCCAAGGCACGTTCTTCTAGCAGTAAGGAACGATGATGAGCTCGGAAAATTGCTAGCAGGAGTTACAATTGCTCATGGAGGAGTCCTACCAAACATCAACCCAATATTGTTGCCAAAGAAGACAGCAGAAAAGGCTCCCAAGGAAGCCAAGCCTTCGACCAAGGCTGCCAAATCCCCTAAGAAAGCATAGGATGTTTATCGTTTCTGGTCCAAGTTAGAAAGATGGATGGTTTGTTGGGTTTTGATTTACTGCATTTTGTATCTACTGTTAGTACGAGTTCTAGTTAGGGTTTTTAATGAAATAGGAAGGTTGTATTAGTAATGGGTTGAATAGGAATTGGATCAATATCTGATTGGTCTATTTTCTGTAATCATATGGTTATTAATCAAAAATATTTATTTCTCCTACTTACGTTTGTTATCTATTGCTTCTTTAGCCCTGTCAATTGAAATTGAATTTTACTTGAAGTTTCACCTTTGTAATAAACTAAATTTCAATTAATCAATCAAATTGAAGTTTCACC

Coding sequence (CDS)

ATGGATTCAGCAGCAGGAGGAAAGGGTAAGAAGGGAGCAGCAGGAAGGAAGGGCGGAGGCCCCAAGAAGAAGTCGGTTACTCGCTCCGTCAAAGCTGGGTTACAGTTTCCAGTCGGAAGAATTGGGCGTTTCTTAAAGAAGGGTCGTTATGCTCAGCGTGTTGGTTCTGGTGCTCCTGTTTACCTAGCCGCTGTTCTTGAGTACCTTGCTGCTGAGGTATTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGTCAAGGATAATCCCAAGGCACGTTCTTCTAGCAGTAAGGAACGATGATGAGCTCGGAAAATTGCTAGCAGGAGTTACAATTGCTCATGGAGGAGTCCTACCAAACATCAACCCAATATTGTTGCCAAAGAAGACAGCAGAAAAGGCTCCCAAGGAAGCCAAGCCTTCGACCAAGGCTGCCAAATCCCCTAAGAAAGCATAG

Protein sequence

MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKTAEKAPKEAKPSTKAAKSPKKA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo00082	Spo00082	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo00082.1	Spo00082.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00082.1.exon.1	Spo00082.1.exon.1	exon
Spo00082.1.exon.2	Spo00082.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00082.1.utr5p.1	Spo00082.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00082.1.CDS.1	Spo00082.1.CDS.1	CDS
Spo00082.1.CDS.2	Spo00082.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00082.1.utr3p.1	Spo00082.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo00082.1 vs. NCBI nr
Match: gi|902233046|gb|KNA22907.1| (hypothetical protein SOVF_029920 [Spinacia oleracea])

HSP 1 Score: 282.0 bits (720), Expect = 6.400e-73
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV
Sbjct: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA
Sbjct: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 152

[Close]

BLAST of Spo00082.1 vs. NCBI nr
Match: gi|388517407|gb|AFK46765.1| (unknown [Lotus japonicus])

HSP 1 Score: 255.8 bits (652), Expect = 4.900e-65
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKKSV+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153

[Close]

BLAST of Spo00082.1 vs. NCBI nr
Match: gi|902232644|gb|KNA22742.1| (hypothetical protein SOVF_031700 [Spinacia oleracea])

HSP 1 Score: 253.8 bits (647), Expect = 1.900e-64
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSA  GKGKKGA GRKGGGPKKK VTRSV+AGLQFPVGRIGRFLKKGRYAQRVG+GAPV
Sbjct: 1   MDSA--GKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINP+LLPKK AEK+PKE K  +KA KSPKKA
Sbjct: 121 NINPVLLPKKVAEKSPKEPKSPSKATKSPKKA 150

[Close]

BLAST of Spo00082.1 vs. NCBI nr
Match: gi|388506518|gb|AFK41325.1| (unknown [Lotus japonicus])

HSP 1 Score: 253.8 bits (647), Expect = 1.900e-64
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153

[Close]

BLAST of Spo00082.1 vs. NCBI nr
Match: gi|731364908|ref|XP_010694234.1| (PREDICTED: probable histone H2A.5 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 253.1 bits (645), Expect = 3.200e-64
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 1


		  
Query: 5   AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAA 64
           AGGKGKKGAAGRKGGGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPVYLAA
Sbjct: 4   AGGKGKKGAAGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 63

Query: 65  VLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 124
           VLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP
Sbjct: 64  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 123

Query: 125 ILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           +LLPKKTAEKA KE K S KAAKSPKKA
Sbjct: 124 VLLPKKTAEKAAKEPK-SPKAAKSPKKA 150

[Close]

BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVN8_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_029920 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.400e-73
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV
Sbjct: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA
Sbjct: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 152

[Close]

BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: I3T2M3_LOTJA (Histone H2A OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.400e-65
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKKSV+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153

[Close]

BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RV94_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_031700 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.300e-64
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDSA  GKGKKGA GRKGGGPKKK VTRSV+AGLQFPVGRIGRFLKKGRYAQRVG+GAPV
Sbjct: 1   MDSA--GKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NINP+LLPKK AEK+PKE K  +KA KSPKKA
Sbjct: 121 NINPVLLPKKVAEKSPKEPKSPSKATKSPKKA 150

[Close]

BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: I3SM33_LOTJA (Histone H2A OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.300e-64
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MDS A GK KKGAAGRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVGSGAPV
Sbjct: 1   MDSTATGKVKKGAAGRKAGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAK-PSTKAAKSPKKA 153
           NINP+LLPKKTAEKAPKE K P+ KAAKSPKKA
Sbjct: 121 NINPVLLPKKTAEKAPKEPKSPAKKAAKSPKKA 153

[Close]

BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEW7_BETVU (Histone H2A OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091950 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.200e-64
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 1


		  
Query: 5   AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAA 64
           AGGKGKKGAAGRKGGGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPVYLAA
Sbjct: 4   AGGKGKKGAAGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAA 63

Query: 65  VLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 124
           VLEYLAAEVLELAGNAARDNKK+RIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP
Sbjct: 64  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 123

Query: 125 ILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           +LLPKKTAEKA KE K S KAAKSPKKA
Sbjct: 124 VLLPKKTAEKAAKEPK-SPKAAKSPKKA 150

[Close]

BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.700e-63
Identity = 133/154 (86.36%), Postives = 142/154 (92.21%), Query Frame = 1


		  
Query: 3   SAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 62
           + AGGKGKKGAAGRK GGP+KKSV+RSVKAGLQFPVGRIGR+LKKGRYAQ VG+GAPVYL
Sbjct: 6   TGAGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYL 65

Query: 63  AAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 122
           AAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLL GVTIAHGGVLPNI
Sbjct: 66  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNI 125

Query: 123 NPILLPKKTAEKA----PKEAKPSTKAAKSPKKA 153
           NP+LLPKKTAEKA     KEAK   KAAKSPKKA
Sbjct: 126 NPVLLPKKTAEKASSGGSKEAKSPKKAAKSPKKA 159

[Close]

BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.900e-62
Identity = 135/159 (84.91%), Postives = 146/159 (91.82%), Query Frame = 1


		  
Query: 1   MDSA---AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSG 60
           MD+A   AGGK KKGAAGRK GGP+KK+V+RSVKAGLQFPVGRIGR+LKKGRYAQR+G+G
Sbjct: 1   MDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTG 60

Query: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGG 120
           APVYLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGG
Sbjct: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGG 120

Query: 121 VLPNINPILLPKKTAEKAP---KEAKPSTKAA-KSPKKA 153
           VLPNINP+LLPKKTAEKA    KEAK   KAA KSPKKA
Sbjct: 121 VLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

[Close]

BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.900e-62
Identity = 135/159 (84.91%), Postives = 146/159 (91.82%), Query Frame = 1


		  
Query: 1   MDSA---AGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSG 60
           MD+A   AGGK KKGAAGRK GGP+KK+V+RSVKAGLQFPVGRIGR+LKKGRYAQR+G+G
Sbjct: 1   MDAAGAGAGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTG 60

Query: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGG 120
           APVYLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGG
Sbjct: 61  APVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGG 120

Query: 121 VLPNINPILLPKKTAEKAP---KEAKPSTKAA-KSPKKA 153
           VLPNINP+LLPKKTAEKA    KEAK   KAA KSPKKA
Sbjct: 121 VLPNINPVLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

[Close]

BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 8.600e-62
Identity = 131/152 (86.18%), Postives = 138/152 (90.79%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MD   GGK  K A GRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPV
Sbjct: 1   MDVGVGGKAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPS-TKAAKSPKK 152
           NINP+LLPKKTAEKA K AK S  KAAKSPKK
Sbjct: 121 NINPVLLPKKTAEKADKPAKASKDKAAKSPKK 152

[Close]

BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 8.600e-62
Identity = 131/152 (86.18%), Postives = 138/152 (90.79%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPV 60
           MD   GGK  K A GRK GGPKKK V+RSVKAGLQFPVGRIGR+LKKGRYAQRVG+GAPV
Sbjct: 1   MDVGVGGKAAKKAVGRKLGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPV 60

Query: 61  YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLP 120
           YLAAVLEYLAAEVLELAGNAARDNKK+RIIPRHVLLA+RND+ELGKLLAGVTIAHGGVLP
Sbjct: 61  YLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLP 120

Query: 121 NINPILLPKKTAEKAPKEAKPS-TKAAKSPKK 152
           NINP+LLPKKTAEKA K AK S  KAAKSPKK
Sbjct: 121 NINPVLLPKKTAEKADKPAKASKDKAAKSPKK 152

[Close]

BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 205.7 bits (522), Expect = 2.000e-53
Identity = 115/147 (78.23%), Postives = 127/147 (86.39%), Query Frame = 1


		  
Query: 7   GKGKKGAAGRKG-GGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAV 66
           GK KK   GRK  G PK KSV++S+KAGLQFPVGRI RFLKKGRYAQR+G GAPVY+AAV
Sbjct: 5   GKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAV 64

Query: 67  LEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPI 126
           LEYLAAEVLELAGNAARDNKKSRIIPRH+LLA+RND+ELGKLL+GVTIAHGGVLPNIN +
Sbjct: 65  LEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSV 124

Query: 127 LLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           LLPKK+A K P E K +    KSPKKA
Sbjct: 125 LLPKKSATK-PAEEKATKSPVKSPKKA 150

[Close]

BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 203.0 bits (515), Expect = 1.300e-52
Identity = 124/179 (69.27%), Postives = 136/179 (75.98%), Query Frame = 1


		  
Query: 1   MDSAAGGKGKKGAAGRK-GGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAP 60
           MDS  G K KKGAAGR+ GGGPKKK V+RSVK+GLQFPVGRIGR+LKKGRY++RVG+GAP
Sbjct: 1   MDS--GTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAP 60

Query: 61  VYLAAVLEYLAAE------------------------VLELAGNAARDNKKSRIIPRHVL 120
           VYLAAVLEYLAAE                        VLELAGNAARDNKK+RIIPRHVL
Sbjct: 61  VYLAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVL 120

Query: 121 LAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKT--AEKAPKEAKPSTKAAKSPKKA 153
           LAVRND+ELG LL GVTIAHGGVLPNINPILLPKK+  A    K  K  +KA KSPKK+
Sbjct: 121 LAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 192.6 bits (488), Expect = 1.800e-49
Identity = 111/150 (74.00%), Postives = 125/150 (83.33%), Query Frame = 1


		  
Query: 3   SAAGGKGKKGAAGRKGGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 62
           S A  K  +GA GRKGG  +KKSV++SVKAGLQFPVGRI R+LKKGRYA R GSGAPVYL
Sbjct: 4   SQATTKPTRGAGGRKGGD-RKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYL 63

Query: 63  AAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 122
           AAVLEYLAAEVLELAGNAARDNKK+RI PRH+ LA+RND+ELG+LL GVTIA GGVLPNI
Sbjct: 64  AAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNI 123

Query: 123 NPILLPKKTAEKAPKEAKPSTKAAKSPKKA 153
           NP+LLPKK+   + +  K S  A KSPKKA
Sbjct: 124 NPVLLPKKSTASSSQAEKAS--ATKSPKKA 150

[Close]

BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 182.2 bits (461), Expect = 2.400e-46
Identity = 92/119 (77.31%), Postives = 104/119 (87.39%), Query Frame = 1


		  
Query: 18  GGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELA 77
           G G  KK+ TRS KAGLQFPVGRI RFLKKG+YA+RVG+GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 78  GNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKTAEKAP 137
           GNAARDNKK+RI+PRH+ LAVRND+EL KLL  VTIA+GGV+PNI+ +LLPKKT    P
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKP 127

[Close]

BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 4.600e-45
Identity = 90/121 (74.38%), Postives = 104/121 (85.95%), Query Frame = 1


		  
Query: 18  GGGPKKKSVTRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELA 77
           G G  KK+ +RS KAGLQFPVGRI RFLK G+YA+RVG+GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGGAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 78  GNAARDNKKSRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPILLPKKTAEKAPK 137
           GNAARDNKK+RI+PRH+ LAVRND+EL KLL  VTIA+GGV+PNI+ +LLPKK     P+
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQ 128

Query: 138 E 139
           E
Sbjct: 129 E 129

The following BLAST results are available for this feature:

BLAST of Spo00082.1 vs. NCBI nr
BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
BLAST of Spo00082.1 vs. TAIR (Arabidopsis)

BLAST of Spo00082.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233046\|gb\|KNA22907.1\|	6.4e-73	100.	hypothetical protein SOVF_0299...	[more]
gi\|388517407\|gb\|AFK46765.1\|	4.9e-65	91.5	unknown [Lotus japonicus]	[more]
gi\|902232644\|gb\|KNA22742.1\|	1.9e-64	90.1	hypothetical protein SOVF_0317...	[more]
gi\|388506518\|gb\|AFK41325.1\|	1.9e-64	90.8	unknown [Lotus japonicus]	[more]
gi\|731364908\|ref\|XP_010694234.1\|	3.2e-64	93.2	PREDICTED: probable histone H2...	[more]

BLAST of Spo00082.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RVN8_SPIOL	4.4e-73	100.	Histone H2A OS=Spinacia olerac...	[more]
I3T2M3_LOTJA	3.4e-65	91.5	Histone H2A OS=Lotus japonicus...	[more]
A0A0K9RV94_SPIOL	1.3e-64	90.1	Histone H2A OS=Spinacia olerac...	[more]
I3SM33_LOTJA	1.3e-64	90.8	Histone H2A OS=Lotus japonicus...	[more]
A0A0J8BEW7_BETVU	2.2e-64	93.2	Histone H2A OS=Beta vulgaris s...	[more]

BLAST of Spo00082.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
H2A_MAIZE	2.7e-63	86.3	Histone H2A OS=Zea mays PE=2 S...	[more]
H2A5_ORYSI	3.9e-62	84.9	Probable histone H2A.5 OS=Oryz...	[more]
H2A5_ORYSJ	3.9e-62	84.9	Probable histone H2A.5 OS=Oryz...	[more]
H2A6_ORYSI	8.6e-62	86.1	Probable histone H2A.6 OS=Oryz...	[more]
H2A6_ORYSJ	8.6e-62	86.1	Probable histone H2A.6 OS=Oryz...	[more]

BLAST of Spo00082.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G59870.1	2.0e-53	78.2	histone H2A 6	[more]
AT5G02560.2	1.3e-52	69.2	histone H2A 12	[more]
AT5G27670.1	1.8e-49	74.0	histone H2A 7	[more]
AT1G51060.1	2.4e-46	77.3	histone H2A 10	[more]
AT5G54640.1	4.6e-45	74.3	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 110..128 score: 8.3E-52coord: 82..96 score: 8.3E-52coord: 24..46 score: 8.3E-52coord: 68..81 score: 8.3E-52coord: 53..68 score: 8.3
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 13..133 score: 4.9
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 22..99 score: 1.1
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 16..132 score: 1.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 15..136 score: 4.84
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 3..152 score: 4.6E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity