Spo00194.1 (mRNA) | SpinachBase

Overview


Name	Spo00194.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 31227787 .. 31228224 (+)
Sequence length	438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTATAGAGGTCCTTATCCATCAGGACCAGGACCATCTCCTCCTGAACATTTCGGCCCGTCGCCACCGCAACCACCAATATATGGTCCTCCACACCCTGAATATGGCCCGCCACCACCGCCTCGCCCACATCCTAATTATTATGCTCCCCAACCTTCTCATGGGCCTCCAGGCCCACCTTCACCTCCTTACTACGCAGCGCACCATCATCAACCCCATCATGGCCGCCCTGGGCCTCCAGGTCCAGGTCCAGGTCCAGCTCCACCACCATACTTCAACCGTGATCCTTACGATCCAGTACCACCACCATACATGGACCGTGATCCCTACGGCCCTCCTCCACCACCACCGTACATGGACCGTGATCCTTACGGTCCACCGACTCCTTGGCCTCGCCCTGGCGGAGCGCCACCGCCACCACCTCGGCCTTACTAA

mRNA sequence

ATGGCCTATAGAGGTCCTTATCCATCAGGACCAGGACCATCTCCTCCTGAACATTTCGGCCCGTCGCCACCGCAACCACCAATATATGGTCCTCCACACCCTGAATATGGCCCGCCACCACCGCCTCGCCCACATCCTAATTATTATGCTCCCCAACCTTCTCATGGGCCTCCAGGCCCACCTTCACCTCCTTACTACGCAGCGCACCATCATCAACCCCATCATGGCCGCCCTGGGCCTCCAGGTCCAGGTCCAGGTCCAGCTCCACCACCATACTTCAACCGTGATCCTTACGATCCAGTACCACCACCATACATGGACCGTGATCCCTACGGCCCTCCTCCACCACCACCGTACATGGACCGTGATCCTTACGGTCCACCGACTCCTTGGCCTCGCCCTGGCGGAGCGCCACCGCCACCACCTCGGCCTTACTAA

Coding sequence (CDS)

ATGGCCTATAGAGGTCCTTATCCATCAGGACCAGGACCATCTCCTCCTGAACATTTCGGCCCGTCGCCACCGCAACCACCAATATATGGTCCTCCACACCCTGAATATGGCCCGCCACCACCGCCTCGCCCACATCCTAATTATTATGCTCCCCAACCTTCTCATGGGCCTCCAGGCCCACCTTCACCTCCTTACTACGCAGCGCACCATCATCAACCCCATCATGGCCGCCCTGGGCCTCCAGGTCCAGGTCCAGGTCCAGCTCCACCACCATACTTCAACCGTGATCCTTACGATCCAGTACCACCACCATACATGGACCGTGATCCCTACGGCCCTCCTCCACCACCACCGTACATGGACCGTGATCCTTACGGTCCACCGACTCCTTGGCCTCGCCCTGGCGGAGCGCCACCGCCACCACCTCGGCCTTACTAA

Protein sequence

MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGPPSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYMDRDPYGPPTPWPRPGGAPPPPPRPY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo00194	Spo00194	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo00194.1	Spo00194.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00194.1.exon.1	Spo00194.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00194.1.CDS.1	Spo00194.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo00194.1 vs. NCBI nr
Match: gi|902210635|gb|KNA16491.1| (hypothetical protein SOVF_088650 [Spinacia oleracea])

HSP 1 Score: 285.8 bits (730), Expect = 4.200e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


		  
Query: 1   MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGP 60
           MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGP
Sbjct: 1   MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGP 60

Query: 61  PSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYM 120
           PSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYM
Sbjct: 61  PSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYM 120

Query: 121 DRDPYGPPTPWPRPGGAPPPPPRPY 146
           DRDPYGPPTPWPRPGGAPPPPPRPY
Sbjct: 121 DRDPYGPPTPWPRPGGAPPPPPRPY 145

[Close]

BLAST of Spo00194.1 vs. NCBI nr
Match: gi|731315930|ref|XP_010693534.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 149.8 bits (377), Expect = 3.600e-33
Identity = 105/155 (67.74%), Postives = 112/155 (72.26%), Query Frame = 1


		  
Query: 1   MAYRGPYPSGPGPSPPEHFGPSPP-QPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPG 60
           MAYRGPYP  PGP PP+ +GP PP   PI+GPP P+YGPPPPPR   +YY+P   HGPPG
Sbjct: 1   MAYRGPYP--PGPPPPDPYGPPPPPHVPIHGPPRPDYGPPPPPRN--DYYSPPHHHGPPG 60

Query: 61  PPSPPYYAAHHHQPH--HGRPGPPGPGP-----GPAPPPYFNRDPYDPVPPPYMDRDPYG 120
           PPSPPYYA     PH  H  PGPP P       GP PPPY +RDPY P  PPYMDRDPYG
Sbjct: 61  PPSPPYYAPQPGPPHGHHHLPGPPPPYMDRDPYGPPPPPYMDRDPYGPSTPPYMDRDPYG 120

Query: 121 PPPPPPYMDRDPYGPPTPWPRPGG--APPPPPRPY 146
            PPPPPYMDRDPYGPPTP PR GG   PPPPPRPY
Sbjct: 121 -PPPPPYMDRDPYGPPTPLPRHGGPSLPPPPPRPY 150

[Close]

BLAST of Spo00194.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAG2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088650 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 2.900e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


		  
Query: 1   MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGP 60
           MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGP
Sbjct: 1   MAYRGPYPSGPGPSPPEHFGPSPPQPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPGP 60

Query: 61  PSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYM 120
           PSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYM
Sbjct: 61  PSPPYYAAHHHQPHHGRPGPPGPGPGPAPPPYFNRDPYDPVPPPYMDRDPYGPPPPPPYM 120

Query: 121 DRDPYGPPTPWPRPGGAPPPPPRPY 146
           DRDPYGPPTPWPRPGGAPPPPPRPY
Sbjct: 121 DRDPYGPPTPWPRPGGAPPPPPRPY 145

[Close]

BLAST of Spo00194.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FSB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027370 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.500e-33
Identity = 105/155 (67.74%), Postives = 112/155 (72.26%), Query Frame = 1


		  
Query: 1   MAYRGPYPSGPGPSPPEHFGPSPP-QPPIYGPPHPEYGPPPPPRPHPNYYAPQPSHGPPG 60
           MAYRGPYP  PGP PP+ +GP PP   PI+GPP P+YGPPPPPR   +YY+P   HGPPG
Sbjct: 1   MAYRGPYP--PGPPPPDPYGPPPPPHVPIHGPPRPDYGPPPPPRN--DYYSPPHHHGPPG 60

Query: 61  PPSPPYYAAHHHQPH--HGRPGPPGPGP-----GPAPPPYFNRDPYDPVPPPYMDRDPYG 120
           PPSPPYYA     PH  H  PGPP P       GP PPPY +RDPY P  PPYMDRDPYG
Sbjct: 61  PPSPPYYAPQPGPPHGHHHLPGPPPPYMDRDPYGPPPPPYMDRDPYGPSTPPYMDRDPYG 120

Query: 121 PPPPPPYMDRDPYGPPTPWPRPGG--APPPPPRPY 146
            PPPPPYMDRDPYGPPTP PR GG   PPPPPRPY
Sbjct: 121 -PPPPPYMDRDPYGPPTPLPRHGGPSLPPPPPRPY 150

The following BLAST results are available for this feature:

BLAST of Spo00194.1 vs. NCBI nr
BLAST of Spo00194.1 vs. UniProtKB/TrEMBL
BLAST of Spo00194.1 vs. ExPASy Swiss-Prot
BLAST of Spo00194.1 vs. TAIR (Arabidopsis)

BLAST of Spo00194.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|902210635\|gb\|KNA16491.1\|	4.2e-74	100.	hypothetical protein SOVF_0886...	[more]
gi\|731315930\|ref\|XP_010693534.1\|	3.6e-33	67.7	PREDICTED: leucine-rich repeat...	[more]

BLAST of Spo00194.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2


Match Name	E-value	Identity	Description
A0A0K9RAG2_SPIOL	2.9e-74	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FSB7_BETVU	2.5e-33	67.7	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo00194.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo00194.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 4..16 score: 2.2E-9coord: 19..40 score: 2.2E-9coord: 60..77 score: 2.2E-9coord: 40..56 score: 2.2E-9coord: 78..103 score: 2.