Spo00363.1 (mRNA)

Overview
NameSpo00363.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S21
Locationchr1 : 25786107 .. 25789443 (+)
Sequence length841
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCCACATATATTAGAGTACCTGCCAAATTTTGTTATTGTGGTAGGAAATTTGTCATTCGAAGCTCTGATACAACACTCAATCCACAAAGGTTGTACTACAAGTGTGATCCTTAAAACAATCTGAGATGGTGCAAGGGAGTAGTTGAGCAAGAAAACAAGGGGCAACAACACGAAGGATATTGCGGGGGAAGCTTAGACGAAGGAGAAAGTATTGAAAACAGGCGAAACATTAAGATGCAAGAAGAATTGAAGCAAATGAAGAAGAAGCTAAAACAACAACAAAAAGTAGTCAAAGTTTTAATACAAATGAGGATATTGATATTTGTAATTTTACTGTATTGTAATCATGAAGTAATGAGAAACATCAAAATAGCTATATTTAAGTTTAGGGCATTTGGTGAAATAAGTTTCAGAATAGGGGCATTTGGTGAAATAAGTTTCAGAATAGGGGCATTTGGGTGAATTGGAAACTTGACTAACGGCGGACTAACGACCCGTTATTAGTAAGGGTATGTTGGGTATTTGTACGAATTGTGAGGAGTATTTTATGAATTATTGAAACTTGATGGGCGTTTGGTGAATTATGGCAAAATTCGATGGCATTTCATGAAATTTCTGATTTTTTTTTAATATGAGAAACGTTTTCATAATCATAGATAGTACTCGTTATTGTTTCAAAGTTGACAATATCTAATATTTCACCCGTCTTTTAATACTCGCAACGTTTGGACTTTTTGCACTATTCATATAATTTACTTTGACTATTCTTGGTGTTTTTTATATAAGATAAAACATAGTCATGTGAGATCTTGTTAAATTCGTCTCAATGTGTATTTTCAAAATATCAACTTTTTACAATTTTTGCATAAAGAGAATTTAAGATATAAATGATCAAAGTTGTGCATTGGCATGCGTGAATGTAACAAAAGTTGCGAGTATTAAAAAACGGAGGAAGTATGACTGAGAGAAACATGGATACTCCGTATAAACCAACCTAAATTTAGCCCGATTTGACAAATTTGACAATCAACAACAAATTTACGCTTTTATAAATCTTTAACAAAGTAATAATTTTTTAATAAGTGAAACATTTTCATATATATATATATATATATATATATATATATATATATAGTACTCGTTCTTGTTTCAAAGTTGACAATCTCTAATATGACTATTTTAGAAACATGGACATAAACCAACCTAAATTCAGCCCGATTTGATAAACTTTTCTTAAATACAATTTCTATTATTATACTTGCACGGTATCGTTTTTTACATATTTAACGAACAAATCGAAAACGTCATGAAACCAAACACGGACACGAACGCAAACACAACCCGAATAATAATATCCGGAATAGGCTCCACAAGACCACAATCCTCAGTCAGGGTGAAAAAAATAAGTAGCAGGCCAAGATACTAACACTATGGAAAGAGAAGCAGAAGCCCAAAACGTTTTTTAAAAAAGCCTAGGTTTTATTGAAAGTCCACTATTTGCTAAGAATTTAGGGTTTATAAGCCCTCTTTATTTCTTCCCATTCCCCTTCGTCTTCATCATTCTTGCGCCGTCTCTCCTCTGCTTCTACTCTCAGGTTTTTCTCTCTTCTTTCCCCTTTTCCTCTGCTTCTTCATGTTTCGAATTGATTTAATGTTAACATATGTTATTCACACCATGTTTTTAGATTCTTAAATTCGCAATTTTGATTTTGAATCTACACTTGTGTCTGGTTTTTGTATTAATTGATTTAATGGTGCATTGAAAATTCATTAAAGCTCAGACAAAAAGTTCGTTTTTCCGATTTTTCTGAGCGATAATTTAAGAAATCGGTTGAGACTGTTGCCGTGAAAGGTTAAAAAATTCAGAATATTATTTGGGTTTTTAATTATGTTGACGATTATTAATCTAAATTTGTAAGATTTAGAAAACAAACTTGGATAGAAGTGTTTGACTCCAGTTTTTGTTGCATCATATTGCTAGTGAATTCGAAAATGCAGAATATGATTTGTGGTTTTTGTTTTAATTGGTGATTATCGTATTTGTGGGGTTTATGATATAATGTTAGATTGTCATGGAATTTTAAAGCACTAAACTTTGTATCATGCTGATATTGAATTGTTTGGTATATTGGACAAGATATTAGAGTTAATTTCATTTGATAAATACGAATTTACTCCACATATATTCACGCTTTTAAGCTCTGTTAAATAAATTCTATGGTCTCTTTTGGTTTGAATAATCACTATTAGCCTGGAATTACTAATCATTGCCGCTTGTTAGTAGGTAGTATTCTATGATTTCTGTGTAGTTCTTAATGGTTAGATATACTTGGTTTAATCCATCTAGCACGTTTAAGGACTCACCTGTTTGCTTGCTGAACTCTTTAACACTCTTATTAATAGCAGTAGTAATTGTATATAGTCACTCTTGTTCCAAGTGATCACTTCAAAACTAAGTATTGCATGAGTCTTATATTTGATTGTTTATGAAGTAGGTATTTGCATTGTTGTGTGATCACCTCAAAACTAAGCAAAGATGCAGAACGACGAGGGAGAAATTATCGATCTTTACATCCCCAGGAAGTGGTAATACTTTTGTTTATATGTTGCTAATTTTTGCTTCTGCTTCTTTTAGTACATAGTCCATATTCAATTGGATAACTAACATATTATTTATGGGTTTGTTTCAGTTCGGCCACTAACAGGCTGATCTACTCCAAGGACCATGCCTCAGTCCAAATCAATGTCGGTCACTTGGACGACAAGGGTGTTTACACCGGTAGTGCCTCCACCTTTGCTCTTTGTGGCTTTGTTCGTGCTCAGGTATAGATTATTGGTGTTCACTGTAATTTACTTTGTTTACTTGCTTCCGTGATTGGTAGCCTTACAAAAGATTTTCGGTTGTTTTCAGGGTGATGCCGATAGTGCTCTAGATCGCCTCTGGCAGAAGAAGAAGGTCCAAAGTGGCCAGTAAGGACTTCACAGTTAGCCTCCTTAGGTAGCGAGGGAAAGTTTTAATGCCTGATGTTTTGCATTAAAAAAGATTGGAAAACTCAATTTTGTGTTAATTTTTACTCCTTTGAAGTTAGAGTTTTTTGTTGAACTGGATTGTGGTTACGTGTATGTGGCTACACATTATGAATTTCATGGTTCCTCTGTTTATCTAACTACTTTTGCAGTCTCTACTCCAGATCTTGTTTTCTTTAGTAAAGCCTTCGGATTCGTTGTCATAATCTGGTTTTTAAGATGTACTCTGAATATAAATCTTAGCAATAATCTGCTAGCAGAAAATTGAAAAAAATAATTGCTGCTAGAATCAGAGTATTTTAACG

mRNA sequence

ATGAGTCCACATATATTAGAGTACCTGCCAAATTTTGTTATTGTGGTAGGAAATTTGTCATTCGAAGCTCTGATACAACACTCAATCCACAAAGGGTTTATAAGCCCTCTTTATTTCTTCCCATTCCCCTTCGTCTTCATCATTCTTGCGCCGTCTCTCCTCTGCTTCTACTCTCAGGTATTTGCATTGTTGTGTGATCACCTCAAAACTAAGCAAAGATGCAGAACGACGAGGGAGAAATTATCGATCTTTACATCCCCAGGAAGTGGTAATACTTTTGTTTATATTTCGGCCACTAACAGGCTGATCTACTCCAAGGACCATGCCTCAGTCCAAATCAATGTCGGTCACTTGGACGACAAGGGTGTTTACACCGGTAGTGCCTCCACCTTTGCTCTTTGTGGCTTTGTTCGTGCTCAGGGTGATGCCGATAGTGCTCTAGATCGCCTCTGGCAGAAGAAGAAGGTCCAAAGTGGCCAGTAAGGACTTCACAGTTAGCCTCCTTAGGTAGCGAGGGAAAGTTTTAATGCCTGATGTTTTGCATTAAAAAAGATTGGAAAACTCAATTTTGTGTTAATTTTTACTCCTTTGAAGTTAGAGTTTTTTGTTGAACTGGATTGTGGTTACGTGTATGTGGCTACACATTATGAATTTCATGGTTCCTCTGTTTATCTAACTACTTTTGCAGTCTCTACTCCAGATCTTGTTTTCTTTAGTAAAGCCTTCGGATTCGTTGTCATAATCTGGTTTTTAAGATGTACTCTGAATATAAATCTTAGCAATAATCTGCTAGCAGAAAATTGAAAAAAATAATTGCTGCTAGAATCAGAGTATTTTAACG

Coding sequence (CDS)

ATGAGTCCACATATATTAGAGTACCTGCCAAATTTTGTTATTGTGGTAGGAAATTTGTCATTCGAAGCTCTGATACAACACTCAATCCACAAAGGGTTTATAAGCCCTCTTTATTTCTTCCCATTCCCCTTCGTCTTCATCATTCTTGCGCCGTCTCTCCTCTGCTTCTACTCTCAGGTATTTGCATTGTTGTGTGATCACCTCAAAACTAAGCAAAGATGCAGAACGACGAGGGAGAAATTATCGATCTTTACATCCCCAGGAAGTGGTAATACTTTTGTTTATATTTCGGCCACTAACAGGCTGATCTACTCCAAGGACCATGCCTCAGTCCAAATCAATGTCGGTCACTTGGACGACAAGGGTGTTTACACCGGTAGTGCCTCCACCTTTGCTCTTTGTGGCTTTGTTCGTGCTCAGGGTGATGCCGATAGTGCTCTAGATCGCCTCTGGCAGAAGAAGAAGGTCCAAAGTGGCCAGTAA

Protein sequence

MSPHILEYLPNFVIVVGNLSFEALIQHSIHKGFISPLYFFPFPFVFIILAPSLLCFYSQVFALLCDHLKTKQRCRTTREKLSIFTSPGSGNTFVYISATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKVQSGQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00363Spo00363gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00363.1Spo00363.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00363.1.exon.1Spo00363.1.exon.1exon
Spo00363.1.exon.2Spo00363.1.exon.2exon
Spo00363.1.exon.3Spo00363.1.exon.3exon
Spo00363.1.exon.4Spo00363.1.exon.4exon
Spo00363.1.exon.5Spo00363.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00363.1.CDS.1Spo00363.1.CDS.1CDS
Spo00363.1.CDS.2Spo00363.1.CDS.2CDS
Spo00363.1.CDS.3Spo00363.1.CDS.3CDS
Spo00363.1.CDS.4Spo00363.1.CDS.4CDS
Spo00363.1.CDS.5Spo00363.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00363.1.utr3p.1Spo00363.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|902197432|gb|KNA13425.1| (hypothetical protein SOVF_117070 [Spinacia oleracea])

HSP 1 Score: 131.3 bits (329), Expect = 1.500e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV
Sbjct: 18  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 77

Query: 157 QSGQ 161
           QSGQ
Sbjct: 78  QSGQ 81
[Close]
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|460366748|ref|XP_004229241.1| (PREDICTED: 40S ribosomal protein S21-2 [Solanum lycopersicum])

HSP 1 Score: 115.9 bits (289), Expect = 6.400e-23
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLDD+GVYTGS +TFALCGF+RAQGDADSA+DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNVGHLDDRGVYTGSFTTFALCGFIRAQGDADSAMDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|565351711|ref|XP_006342798.1| (PREDICTED: 40S ribosomal protein S21-2 [Solanum tuberosum])

HSP 1 Score: 115.5 bits (288), Expect = 8.300e-23
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLDD+G+YTGS +TFALCGF+RAQGDADSA+DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNVGHLDDRGIYTGSFTTFALCGFIRAQGDADSAMDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|661897166|emb|CDO98878.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 115.5 bits (288), Expect = 8.300e-23
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLD++G+YTG+ STFALCGFVRAQGDADSALDRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQVNVGHLDERGIYTGNFSTFALCGFVRAQGDADSALDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. NCBI nr
Match: gi|747086882|ref|XP_011090961.1| (PREDICTED: 40S ribosomal protein S21-like [Sesamum indicum])

HSP 1 Score: 115.2 bits (287), Expect = 1.100e-22
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQIN+GHLD++G+YTG++STFALCGF+RAQGDADSALDRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQINIGHLDERGIYTGASSTFALCGFIRAQGDADSALDRLWQKKKV 77

Query: 157 QSGQ 161
           +  Q
Sbjct: 78  EIKQ 81
[Close]
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R916_SPIOL (40S ribosomal protein S21 OS=Spinacia oleracea GN=SOVF_093210 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.000e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV
Sbjct: 18  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 77

Query: 157 QSGQ 161
           QSGQ
Sbjct: 78  QSGQ 81
[Close]
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: K4AWT4_SOLLC (40S ribosomal protein S21 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.400e-23
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLDD+GVYTGS +TFALCGF+RAQGDADSA+DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNVGHLDDRGVYTGSFTTFALCGFIRAQGDADSAMDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GU27_SOLCH (40S ribosomal protein S21 OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.800e-23
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLDD+G+YTGS +TFALCGF+RAQGDADSA+DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNVGHLDDRGIYTGSFTTFALCGFIRAQGDADSAMDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: M1AST6_SOLTU (40S ribosomal protein S21 OS=Solanum tuberosum GN=PGSC0003DMG400011319 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.800e-23
Identity = 53/64 (82.81%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLDD+G+YTGS +TFALCGF+RAQGDADSA+DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNVGHLDDRGIYTGSFTTFALCGFIRAQGDADSAMDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Match: A0A068TU50_COFCA (40S ribosomal protein S21 OS=Coffea canephora GN=GSCOC_T00025830001 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.800e-23
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+NVGHLD++G+YTG+ STFALCGFVRAQGDADSALDRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQVNVGHLDERGIYTGNFSTFALCGFVRAQGDADSALDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EARQ 81
[Close]
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.400e-22
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+N+GHLD  G+YTG  +TFALCGFVRAQGDADS +DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EAKQ 81
[Close]
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.400e-22
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNR+I SKDHASVQ+N+GHLD  G+YTG  +TFALCGFVRAQGDADS +DRLWQKKKV
Sbjct: 18  SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EAKQ 81
[Close]
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.600e-20
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNR+I +KDHASVQIN+GH+D+ G+Y G  +TFAL GF+RAQGDADSALDRLWQK+K 
Sbjct: 18  SATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKA 77

Query: 157 QSGQ 161
           +  Q
Sbjct: 78  EVKQ 81
[Close]
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.600e-20
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNR+I +KDHASVQIN+GHLD  G+Y G  +TFAL GFVRAQGDADS+LDRLWQKKK 
Sbjct: 18  SATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKA 77

Query: 157 QSGQ 161
           +  Q
Sbjct: 78  EIKQ 81
[Close]
BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Match: RS21_DICDI (40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.200e-14
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKK 155
           SATNRLI +KDHASVQIN+GH++ +G+Y G  + FA CGF+R  G +D+AL+RL Q+K
Sbjct: 15  SATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALNRLAQQK 72
[Close]
BLAST of Spo00363.1 vs. TAIR (Arabidopsis)
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 107.5 bits (267), Expect = 8.000e-24
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNRLI SKDHASVQ+N+GHLD  G+YTG  +TFALCGFVRAQGDADS +DRLWQKKKV
Sbjct: 18  SATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EAKQ 81
[Close]
BLAST of Spo00363.1 vs. TAIR (Arabidopsis)
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 106.7 bits (265), Expect = 1.400e-23
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 1 

		  

Query: 97  SATNRLIYSKDHASVQINVGHLDDKGVYTGSASTFALCGFVRAQGDADSALDRLWQKKKV 156
           SATNR+I SKDHASVQ+N+GHLD  G+YTG  +TFALCGFVRAQGDADS +DRLWQKKKV
Sbjct: 18  SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 157 QSGQ 161
           ++ Q
Sbjct: 78  EAKQ 81
The following BLAST results are available for this feature:
BLAST of Spo00363.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902197432|gb|KNA13425.1|1.5e-27100.hypothetical protein SOVF_1170... [more]
gi|460366748|ref|XP_004229241.1|6.4e-2384.3PREDICTED: 40S ribosomal prote... [more]
gi|565351711|ref|XP_006342798.1|8.3e-2382.8PREDICTED: 40S ribosomal prote... [more]
gi|661897166|emb|CDO98878.1|8.3e-2384.3unnamed protein product [Coffe... [more]
gi|747086882|ref|XP_011090961.1|1.1e-2282.8PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo00363.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R916_SPIOL1.0e-27100.40S ribosomal protein S21 OS=S... [more]
K4AWT4_SOLLC4.4e-2384.340S ribosomal protein S21 OS=S... [more]
A0A0V0GU27_SOLCH5.8e-2382.840S ribosomal protein S21 OS=S... [more]
M1AST6_SOLTU5.8e-2382.840S ribosomal protein S21 OS=S... [more]
A0A068TU50_COFCA5.8e-2384.340S ribosomal protein S21 OS=C... [more]
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BLAST of Spo00363.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS212_ARATH1.4e-2278.140S ribosomal protein S21-2 OS... [more]
RS211_ARATH2.4e-2276.540S ribosomal protein S21-1 OS... [more]
RS21_ORYSJ6.6e-2070.340S ribosomal protein S21 OS=O... [more]
RS21_MAIZE6.6e-2073.440S ribosomal protein S21 OS=Z... [more]
RS21_DICDI9.2e-1460.340S ribosomal protein S21 OS=D... [more]
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BLAST of Spo00363.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G27700.18.0e-2478.1Ribosomal protein S21e [more]
AT3G53890.11.4e-2376.5Ribosomal protein S21e [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001931Ribosomal protein S21ePRODOMPD006584coord: 105..153
score: 1.0
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 97..160
score: 6.8
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 97..156
score: 8.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome