Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCTAAGTCCAGAAAAGTTTTATAAATAGCCTTCACGATTCTCTTGGCTGAAGCTTCTGAAAATTTCTGGTTTCTGCGCGCAATACAAACCATACTTCTATACCACTCTTTTACTTTCTCTCTCATCAAAAACAAAATCCAAAAAACTTAACAAAAATCGAATCGATCGAAAAACAAATTGCCAAATCTTAATCGTATAAGAAGAACAGCGGATTTGAAAACCGATTTTGGGTGTTTCGCAGTCGTCGTATGTCCTCGGAGATTTCCGAAAGGTTGGTTTGATTTTTCATTTTTGTTTCATCAATTTGTTCGTGATTGTTGATTTATCGTTATTGTTCAGGAATTTGTGGGATTCTTTTTAGTTGTAAGAGTTGGAATTTGAGAAAAATGTTCGTTTTTAAGGTTGATTTTTGATTTCTTTCCTTAGGGTTTGAGTTTATTTGTTAGTTTTTGTTGTCTGTTTTGTGATGCGAAATGAACACTTTGGTTAAAGAACTGAAAAAATCTTTGAACTCCTTAGGGTTAGGATTAACTTGTTGATTTAGGGTTAGGGTTTCCACTTGAAATTTCGAATTGCGTATGTTATTTGTTGATTGGAACACTAATGAATGGAACGGTGTATCAATTTTGGGGGGAAATTGTTTAGCTTCATTTTATGCTTTGATGATGAATATCTGACTGTTGAAGTAATTGTTGATTTAGGGTAAGGTTTTACTTGAATTTTCGAATTGCGTATGGTATTTATTGATTGGAACACTAATGAATGAACTGGTGTATCAATATGGGGGAAATTGTTTAGCTTGATTTTATGCTTTGATGGTGAATATCTGACTGTTGAAGTAAATAGAAAAACTTAGCCTGTGATCTCGTTTGTTGCAGATTGTGAACGAAGTAGTTGTGTCGGGGGCAGTGGAGACGGGTTTTGATTCTAATTTGCATCGCCCTTGTTTGAATTATTCCTTCCAGAGGTGGTAGTTGCTGTTATAAATTGAATTTAGTCATAATTTTAACTCGGAAATTATCTTTAATTTGCCAGGATGGGCACTTTCCATTACGACAAAGCTTCCTCTAACACACATTGTTCTTCTTCTGTACCCTTTGATTGCACCAGGAGAAGGAAGACTCGGAGAAGGTGTGATGGAACTGATTCTCTGGCTGATACTCTTGCCAAATGGAAAGAAATCAATGAGAAACTCTGTGAACAAAAGGAAGATGGCAAGCCTGTTAGGAAGGCGCCTGCAAAGGGGTCGAAGAAAGGATGTATGAAAGGCAAAGGTGGACCTGAGAATTCCCTTTTTAAATACAGAGGAGTTAGACAGAGGACTTGGGGTAAATGGGTAGCTGAGATTCGAGAGCCGAACAGAGGTAAAAGACTTTGGCTCGGTACTTACCCCACTGCCCTTGAAGCTGCATTGTCTTATGATGAGGCTGCTCGTGCTATGTATGGTGAAAGTGCTAGATTGAACTTGCCATATTACCCTGCACCAGTAAGGCAGGATTCCAGAGATGATTCTGCTAGTGCCTCATACACAACAGCTACTACGACTAGTGCCTCATACACAACAGCATGTACAACTTCTGGTAATAACTCTGATGTCTATGTTGGAGAGCAATGGGATGGTGTAACGGGTGGTGCTACTGTTAAGCGAGAAGACATTGAAGGTGATTCTGAGTTTGATTTTAAAAATGCTTCAGCAGGTTTTAAGGTTGGCACCCCAGGTACTCCTGTTGATAAAGAAGAGAAGGCAGTTGTTGATAACGGTGAAGGTGACCAAGGTGGCATTGACATCAATGACTACTTGCATAACTTGACAATGGATGAAATGTTTGACGTTGATGAATTACTTGGAGCTATAGATGCTGGCCCTGTTTCCCCTGTAGGTAATACGACAACACAAGGACATGATGCATATGGTGCTTTCAGATCTCAAGTAGAGAACAATAGTATACAGCTAGAGAGGCCGGAGAGCTGGTCGAATCACGAACAAAATCCGAATTACTTTCATCTGTTTCAAAATCAAGATGATGTCAACTTGTACGGAAGTGTGAATAACAGTGATCAAGGCTACAATGGGGTTAACTATGGGTTCGACTTCTTAAACCCTGACAGACAAGAGGATTCTTCTCTACCAGTCGAAGATCATGGCTTTCTGAATCTCGGAGAATTGGGGTTTTAACAGTGGTGATGGGCCTCTTTGTACAGCAGCAATGGTGAAGAAATCATAATGTAGCTTCATGTAGCAAAAAACTCAGAATGGTATTTTGGTGTCTAGTTTGAGTTTGTTGGGTGCTCCAATTAGTTTCACTTGGTTCATTCTGGAACCTTCATAACTGAAGCAAAGCTTATTCTCAATAGGTTTTTGATATAAGAGACATAAGCTCTGTTCTTTCTTTTTTCCTCTTGTTCTTGCTAACAATGAACATTTAGGACTAGTGATGTGAAGCTTGAATACTTTTTTGAGGGAATGTAATTCTTTTTTGTACAAATCAACTTTGCTGACCTTGCCTGAAACAAGCTACACTGACATCCTTTTGCAGTTCCATTCCTACATTCAACTTTTGGTGTTTGCCTTAATCTTCTTTTGCGCGATTTGTTGTAACTGTGAACTTTTACTCGAGTCACAATTTTTCCAACAGAATATGCACTTCCCCTGAGTGATTGTAAATTGTGGTGCATTTTGGCTAGTTTTGTTGTGAAATGTACAGTCACGACTAGGCACCCTGAGTTGCTATAATTTTCGGTAGAGGGCTTTCTTATAGAGGCTTGTGTTTTATGTAAGTCTTTGCCTCTCGGAATTAATGTTAATTATTTTGACTTGGTTGGCATGTTGAATGCTCCATTGTAGAAACGTTCAAACAGAACCAATTTTTGTTCATTCTTTTGCCATATAAATGGAATTTGGGTACTTCTGATGTCTCTACGAATGATCTGGTCCTGTGTTCTGAAACTACGTTAAGCACAATGTTATTGCTTGTCTGAATGTTCTGTTGCAATCCAGATTTCACTGTTGTAATCATCCTTATCAAAATTAGTCATGGAGCCTTGTTAAAGTGTTTTAATTTGCTTAAATGTTATACGAGTAATTTTTTCTTTTTTCTCAAAATCATAATTTGTTCTCTTCATGTTTGATCAAGGTTCCTGAATAGAATGGTCAGGATTTACATTAGTGTCCATACTCCGTAGTTTGATTTTTGGTCGAAAACATAAGTTTCACAACCTTTATTTTCCAGATCAAACTCTTGATATTTTGTGGTTCACATTCAGGCTTCGTTTGGTAGGGCGTAAAACGTTTTCATGTAAAACGATTTTTCCCTTTCAATCATTTTACGTTGATTGGTTGGATAAGAGACGTCCGTCAAAAGTAGAACACCCTTTTTCCATTTGAAATGAAGGGAAACCACTTTTCCTTCTTTCCTCCTTACCTCCCTCTCCTTTCTTCCCCTCAATCTTCACCATCTTCTCCCATTTTCCTTTAAGTTACCAAACAAAGGAAAACTAATTTGGAATTGTGCTTTCCCTTGAAAAATATTTTCCATGGAAATTCATTTTACAATGAAAACGTTTTACGTCCTACTAAACGGAGCCTCAAGCATTTTACATTGACAAATAAAAAAAGTACTTATATAACAAATTAAAGCTCAATTTGACAAGAATAACAAAAGAAAATAACTTATATTTCTTCATTAGTTAACTCATTACATTATACAAATTCACTTCTACACATCATCACACATTAAACAACATCCTTGAACAAAGAGCACTCTATCATTTGAGAACTTGGAATTATGCAGCAGAAGAGATATCAATGGACTTGACCTCATGCTTCTTTTCCTCCATTTTAGGCACAGTGACGGTAAGAACACCATTCTCCATATTCGCCTTAATCTCCTCCATCTTCGCATTCTCCGGCAGCCTAAACCTCCTTAA TCTAAGTCCAGAAAAGTTTTATAAATAGCCTTCACGATTCTCTTGGCTGAAGCTTCTGAAAATTTCTGGTTTCTGCGCGCAATACAAACCATACTTCTATACCACTCTTTTACTTTCTCTCTCATCAAAAACAAAATCCAAAAAACTTAACAAAAATCGAATCGATCGAAAAACAAATTGCCAAATCTTAATCGTATAAGAAGAACAGCGGATTTGAAAACCGATTTTGGGTGTTTCGCAGTCGTCGTATGTCCTCGGAGATTTCCGAAAGGATGGGCACTTTCCATTACGACAAAGCTTCCTCTAACACACATTGTTCTTCTTCTGTACCCTTTGATTGCACCAGGAGAAGGAAGACTCGGAGAAGGTGTGATGGAACTGATTCTCTGGCTGATACTCTTGCCAAATGGAAAGAAATCAATGAGAAACTCTGTGAACAAAAGGAAGATGGCAAGCCTGTTAGGAAGGCGCCTGCAAAGGGGTCGAAGAAAGGATGTATGAAAGGCAAAGGTGGACCTGAGAATTCCCTTTTTAAATACAGAGGAGTTAGACAGAGGACTTGGGGTAAATGGGTAGCTGAGATTCGAGAGCCGAACAGAGGTAAAAGACTTTGGCTCGGTACTTACCCCACTGCCCTTGAAGCTGCATTGTCTTATGATGAGGCTGCTCGTGCTATGTATGGTGAAAGTGCTAGATTGAACTTGCCATATTACCCTGCACCAGTAAGGCAGGATTCCAGAGATGATTCTGCTAGTGCCTCATACACAACAGCTACTACGACTAGTGCCTCATACACAACAGCATGTACAACTTCTGGTAATAACTCTGATGTCTATGTTGGAGAGCAATGGGATGGTGTAACGGGTGGTGCTACTGTTAAGCGAGAAGACATTGAAGGTGATTCTGAGTTTGATTTTAAAAATGCTTCAGCAGGTTTTAAGGTTGGCACCCCAGGTACTCCTGTTGATAAAGAAGAGAAGGCAGTTGTTGATAACGGTGAAGGTGACCAAGGTGGCATTGACATCAATGACTACTTGCATAACTTGACAATGGATGAAATGTTTGACGTTGATGAATTACTTGGAGCTATAGATGCTGGCCCTGTTTCCCCTGTAGGTAATACGACAACACAAGGACATGATGCATATGGTGCTTTCAGATCTCAAGTAGAGAACAATAGTATACAGCTAGAGAGGCCGGAGAGCTGGTCGAATCACGAACAAAATCCGAATTACTTTCATCTGTTTCAAAATCAAGATGATGTCAACTTGTACGGAAGTGTGAATAACAGTGATCAAGGCTACAATGGGGTTAACTATGGGTTCGACTTCTTAAACCCTGACAGACAAGAGGATTCTTCTCTACCAGTCGAAGATCATGGCTTTCTGAATCTCGGAGAATTGGGCAGAAGAGATATCAATGGACTTGACCTCATGCTTCTTTTCCTCCATTTTAGGCACAGTGACGGTAAGAACACCATTCTCCATATTCGCCTTAATCTCCTCCATCTTCGCATTCTCCGGCAGCCTAAACCTCCTTAA ATGTCCTCGGAGATTTCCGAAAGGATGGGCACTTTCCATTACGACAAAGCTTCCTCTAACACACATTGTTCTTCTTCTGTACCCTTTGATTGCACCAGGAGAAGGAAGACTCGGAGAAGGTGTGATGGAACTGATTCTCTGGCTGATACTCTTGCCAAATGGAAAGAAATCAATGAGAAACTCTGTGAACAAAAGGAAGATGGCAAGCCTGTTAGGAAGGCGCCTGCAAAGGGGTCGAAGAAAGGATGTATGAAAGGCAAAGGTGGACCTGAGAATTCCCTTTTTAAATACAGAGGAGTTAGACAGAGGACTTGGGGTAAATGGGTAGCTGAGATTCGAGAGCCGAACAGAGGTAAAAGACTTTGGCTCGGTACTTACCCCACTGCCCTTGAAGCTGCATTGTCTTATGATGAGGCTGCTCGTGCTATGTATGGTGAAAGTGCTAGATTGAACTTGCCATATTACCCTGCACCAGTAAGGCAGGATTCCAGAGATGATTCTGCTAGTGCCTCATACACAACAGCTACTACGACTAGTGCCTCATACACAACAGCATGTACAACTTCTGGTAATAACTCTGATGTCTATGTTGGAGAGCAATGGGATGGTGTAACGGGTGGTGCTACTGTTAAGCGAGAAGACATTGAAGGTGATTCTGAGTTTGATTTTAAAAATGCTTCAGCAGGTTTTAAGGTTGGCACCCCAGGTACTCCTGTTGATAAAGAAGAGAAGGCAGTTGTTGATAACGGTGAAGGTGACCAAGGTGGCATTGACATCAATGACTACTTGCATAACTTGACAATGGATGAAATGTTTGACGTTGATGAATTACTTGGAGCTATAGATGCTGGCCCTGTTTCCCCTGTAGGTAATACGACAACACAAGGACATGATGCATATGGTGCTTTCAGATCTCAAGTAGAGAACAATAGTATACAGCTAGAGAGGCCGGAGAGCTGGTCGAATCACGAACAAAATCCGAATTACTTTCATCTGTTTCAAAATCAAGATGATGTCAACTTGTACGGAAGTGTGAATAACAGTGATCAAGGCTACAATGGGGTTAACTATGGGTTCGACTTCTTAAACCCTGACAGACAAGAGGATTCTTCTCTACCAGTCGAAGATCATGGCTTTCTGAATCTCGGAGAATTGGGCAGAAGAGATATCAATGGACTTGACCTCATGCTTCTTTTCCTCCATTTTAGGCACAGTGACGGTAAGAACACCATTCTCCATATTCGCCTTAATCTCCTCCATCTTCGCATTCTCCGGCAGCCTAAACCTCCTTAA MSSEISERMGTFHYDKASSNTHCSSSVPFDCTRRRKTRRRCDGTDSLADTLAKWKEINEKLCEQKEDGKPVRKAPAKGSKKGCMKGKGGPENSLFKYRGVRQRTWGKWVAEIREPNRGKRLWLGTYPTALEAALSYDEAARAMYGESARLNLPYYPAPVRQDSRDDSASASYTTATTTSASYTTACTTSGNNSDVYVGEQWDGVTGGATVKREDIEGDSEFDFKNASAGFKVGTPGTPVDKEEKAVVDNGEGDQGGIDINDYLHNLTMDEMFDVDELLGAIDAGPVSPVGNTTTQGHDAYGAFRSQVENNSIQLERPESWSNHEQNPNYFHLFQNQDDVNLYGSVNNSDQGYNGVNYGFDFLNPDRQEDSSLPVEDHGFLNLGELGRRDINGLDLMLLFLHFRHSDGKNTILHIRLNLLHLRILRQPKPP Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo00375.1 vs. NCBI nr
Match: gi|902167827|gb|KNA07422.1| (hypothetical protein SOVF_172040 isoform B [Spinacia oleracea]) HSP 1 Score: 765.0 bits (1974), Expect = 7.000e-218 Identity = 377/378 (99.74%), Postives = 378/378 (100.00%), Query Frame = 1
BLAST of Spo00375.1 vs. NCBI nr
Match: gi|902167826|gb|KNA07421.1| (hypothetical protein SOVF_172040 isoform A, partial [Spinacia oleracea]) HSP 1 Score: 713.0 bits (1839), Expect = 3.200e-202 Identity = 356/368 (96.74%), Postives = 359/368 (97.55%), Query Frame = 1
BLAST of Spo00375.1 vs. NCBI nr
Match: gi|731362499|ref|XP_010692919.1| (PREDICTED: dehydration-responsive element-binding protein 2C-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 498.4 bits (1282), Expect = 1.200e-137 Identity = 275/391 (70.33%), Postives = 309/391 (79.03%), Query Frame = 1
BLAST of Spo00375.1 vs. NCBI nr
Match: gi|731362501|ref|XP_010692920.1| (PREDICTED: dehydration-responsive element-binding protein 2C-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 454.5 bits (1168), Expect = 2.000e-124 Identity = 250/359 (69.64%), Postives = 283/359 (78.83%), Query Frame = 1
BLAST of Spo00375.1 vs. NCBI nr
Match: gi|910752140|gb|AKU47817.1| (dehydration responsive element binding transcription factor 2A [Haloxylon ammodendron]) HSP 1 Score: 388.7 bits (997), Expect = 1.400e-104 Identity = 231/385 (60.00%), Postives = 267/385 (69.35%), Query Frame = 1
BLAST of Spo00375.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJK1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172040 PE=4 SV=1) HSP 1 Score: 765.0 bits (1974), Expect = 4.900e-218 Identity = 377/378 (99.74%), Postives = 378/378 (100.00%), Query Frame = 1
BLAST of Spo00375.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLF6_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_172040 PE=4 SV=1) HSP 1 Score: 713.0 bits (1839), Expect = 2.200e-202 Identity = 356/368 (96.74%), Postives = 359/368 (97.55%), Query Frame = 1
BLAST of Spo00375.1 vs. UniProtKB/TrEMBL
Match: A0A0K1LXK2_9CARY (Dehydration responsive element binding transcription factor 2A OS=Haloxylon ammodendron GN=DREB2A PE=2 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 9.500e-105 Identity = 231/385 (60.00%), Postives = 267/385 (69.35%), Query Frame = 1
BLAST of Spo00375.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEU3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g044600 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 4.000e-103 Identity = 212/308 (68.83%), Postives = 238/308 (77.27%), Query Frame = 1
BLAST of Spo00375.1 vs. UniProtKB/TrEMBL
Match: D5L6Z1_9CARY (DREB2A OS=Salicornia brachiata PE=4 SV=1) HSP 1 Score: 374.8 bits (961), Expect = 1.400e-100 Identity = 218/379 (57.52%), Postives = 263/379 (69.39%), Query Frame = 1
BLAST of Spo00375.1 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 8.200e-41 Identity = 94/175 (53.71%), Postives = 116/175 (66.29%), Query Frame = 1
BLAST of Spo00375.1 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2) HSP 1 Score: 169.5 bits (428), Expect = 8.200e-41 Identity = 94/175 (53.71%), Postives = 116/175 (66.29%), Query Frame = 1
BLAST of Spo00375.1 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2) HSP 1 Score: 166.8 bits (421), Expect = 5.300e-40 Identity = 139/380 (36.58%), Postives = 196/380 (51.58%), Query Frame = 1
BLAST of Spo00375.1 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 2.900e-38 Identity = 126/318 (39.62%), Postives = 166/318 (52.20%), Query Frame = 1
BLAST of Spo00375.1 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3) HSP 1 Score: 157.1 bits (396), Expect = 4.200e-37 Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 1
BLAST of Spo00375.1 vs. TAIR (Arabidopsis)
Match: AT2G40340.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 166.8 bits (421), Expect = 3.000e-41 Identity = 139/380 (36.58%), Postives = 196/380 (51.58%), Query Frame = 1
BLAST of Spo00375.1 vs. TAIR (Arabidopsis)
Match: AT5G05410.1 (DRE-binding protein 2A) HSP 1 Score: 161.0 bits (406), Expect = 1.600e-39 Identity = 126/318 (39.62%), Postives = 166/318 (52.20%), Query Frame = 1
BLAST of Spo00375.1 vs. TAIR (Arabidopsis)
Match: AT2G40350.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 157.1 bits (396), Expect = 2.400e-38 Identity = 78/128 (60.94%), Postives = 96/128 (75.00%), Query Frame = 1
BLAST of Spo00375.1 vs. TAIR (Arabidopsis)
Match: AT3G11020.1 (DRE/CRT-binding protein 2B) HSP 1 Score: 147.5 bits (371), Expect = 1.900e-35 Identity = 113/285 (39.65%), Postives = 149/285 (52.28%), Query Frame = 1
BLAST of Spo00375.1 vs. TAIR (Arabidopsis)
Match: AT5G18450.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 127.1 bits (318), Expect = 2.600e-29 Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00375.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00375.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00375.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo00375.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|