Spo00383.1 (mRNA)

Overview
NameSpo00383.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionHeavy metal transport/detoxification superfamily protein
Locationchr1 : 25664622 .. 25665605 (-)
Sequence length785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGAAAGAACCACCCTAATTTAAAGGCAAGTCCGAAAAGCAGGAATAAGATGACCTTTACCTAAAGTTGATTTATACTACTTTACTATTATCATCCCCAGAAAAAAGAAGAATCTAATGCCTTCATGGTTATGTTTAAATGCAGGTATATATGTGCCTTAACAAATGCAGAAACATAAGCAATTTCTAGTTTTTCCTACATTTCTCGCTCTTTCTTAGAGTTACAGACTTTCATATTACAATCCCATCAGAAAAAATTATGACAAATGTAAGTATTCATTTCGTACAATTTCTATGTGAATTCAGCATCATTTTTAAACATAACCTTTTCGGCGTCATCCATTAACAGGTGGTTGAGTTGAAGGTGGGACTGCATTGTGATGAATGCATAAAGAAGATATTGAAGGCCATCAAAAAGATTCAAGGTAAAGAACACACAACCTGTAATATTAGTCAAATATTACATGTTCTGTTCTTTTTAGGAAATCTGTTATTTCATTAATTATGTTGATGTTGATTTTGTTTCTTGATTTCTTGGCTAAGATATTGAAACCTACAACATCGATACACAGCTTAACAAAGTCACAGTAACGGGAAATGTTACCGAGGAGGAGGTGATACGAGTGATCCATAAAATTGGAAAGACAGCAACCACTTGGGATGACCGCCAACAATCAAACAGTGTGGCATCAGGGTATATGTGATCTTATTTCTGCAATTTCTGGAGTTATCTGAAATTTTCGTCCTACATCTCATAGCATATGAAGATTTATATAGTAATATCGTTGTATACAGTATAAGCAGTTGATTTTAGAATGTAGCTACATTGTTTTCAACCTGTAATTCAACACACTTCTCTCTGTTGATGTTCAACATTTTGATGCAGTTTTATCTTCCTGCTGTTCATTTCTTGCTGCTCATGTATTTCTTACAGAATTCTTTCAACTTTAAGCTAATTGGGTTAAGTAAATGTCTAAAATATAT

mRNA sequence

TATGAAAGAACCACCCTAATTTAAAGGCAAGTCCGAAAAGCAGGAATAAGATGACCTTTACCTAAAGTTGATTTATACTACTTTACTATTATCATCCCCAGAAAAAAGAAGAATCTAATGCCTTCATGGTTATGTTTAAATGCAGGTATATATGTGCCTTAACAAATGCAGAAACATAAGCAATTTCTAGTTTTTCCTACATTTCTCGCTCTTTCTTAGAGTTACAGACTTTCATATTACAATCCCATCAGAAAAAATTATGACAAATGTGGTTGAGTTGAAGGTGGGACTGCATTGTGATGAATGCATAAAGAAGATATTGAAGGCCATCAAAAAGATTCAAGATATTGAAACCTACAACATCGATACACAGCTTAACAAAGTCACAGTAACGGGAAATGTTACCGAGGAGGAGGTGATACGAGTGATCCATAAAATTGGAAAGACAGCAACCACTTGGGATGACCGCCAACAATCAAACAGTGTGGCATCAGGGTATATGTGATCTTATTTCTGCAATTTCTGGAGTTATCTGAAATTTTCGTCCTACATCTCATAGCATATGAAGATTTATATAGTAATATCGTTGTATACAGTATAAGCAGTTGATTTTAGAATGTAGCTACATTGTTTTCAACCTGTAATTCAACACACTTCTCTCTGTTGATGTTCAACATTTTGATGCAGTTTTATCTTCCTGCTGTTCATTTCTTGCTGCTCATGTATTTCTTACAGAATTCTTTCAACTTTAAGCTAATTGGGTTAAGTAAATGTCTAAAATATAT

Coding sequence (CDS)

ATGACAAATGTGGTTGAGTTGAAGGTGGGACTGCATTGTGATGAATGCATAAAGAAGATATTGAAGGCCATCAAAAAGATTCAAGATATTGAAACCTACAACATCGATACACAGCTTAACAAAGTCACAGTAACGGGAAATGTTACCGAGGAGGAGGTGATACGAGTGATCCATAAAATTGGAAAGACAGCAACCACTTGGGATGACCGCCAACAATCAAACAGTGTGGCATCAGGGTATATGTGA

Protein sequence

MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKIGKTATTWDDRQQSNSVASGYM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00383Spo00383gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00383.1Spo00383.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00383.1.utr5p.1Spo00383.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00383.1.CDS.3Spo00383.1.CDS.3CDS
Spo00383.1.CDS.2Spo00383.1.CDS.2CDS
Spo00383.1.CDS.1Spo00383.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00383.1.utr3p.1Spo00383.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00383.1.exon.3Spo00383.1.exon.3exon
Spo00383.1.exon.2Spo00383.1.exon.2exon
Spo00383.1.exon.1Spo00383.1.exon.1exon


Homology
[Close]
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|902221532|gb|KNA18939.1| (hypothetical protein SOVF_066130 [Spinacia oleracea])

HSP 1 Score: 162.2 bits (409), Expect = 3.900e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI
Sbjct: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60

Query: 61 GKTATTWDDRQQSNSVASGYM 82
          GKTATTWDDRQQSNSVASGYM
Sbjct: 61 GKTATTWDDRQQSNSVASGYM 81
[Close]
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|731362466|ref|XP_010692900.1| (PREDICTED: copper transport protein ATX1 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.9 bits (359), Expect = 2.500e-31
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          MTN+VEL+VGLHCDECIKKILKAIKKI+DIETYN+DT+LNKVTVTGNVTEEEVIRVIHKI
Sbjct: 1  MTNMVELRVGLHCDECIKKILKAIKKIEDIETYNVDTRLNKVTVTGNVTEEEVIRVIHKI 60

Query: 61 GKTATTWDDRQQSNSVAS 79
          GKTATTWDDRQQ N+ A+
Sbjct: 61 GKTATTWDDRQQLNNFAA 78
[Close]
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|731362468|ref|XP_010692901.1| (PREDICTED: copper transport protein ATX1 isoform X3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 137.1 bits (344), Expect = 1.400e-29
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M  +VEL+VGLHCDECIKKILKAIKKI+DIETYN+DT+LNKVTVTGNVTEEEVIRVIHKI
Sbjct: 1  MYMMVELRVGLHCDECIKKILKAIKKIEDIETYNVDTRLNKVTVTGNVTEEEVIRVIHKI 60

Query: 61 GKTATTWDDRQQSNSVAS 79
          GKTATTWDDRQQ N+ A+
Sbjct: 61 GKTATTWDDRQQLNNFAA 78
[Close]
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|1009121533|ref|XP_015877508.1| (PREDICTED: copper transport protein ATX1 [Ziziphus jujuba])

HSP 1 Score: 129.0 bits (323), Expect = 3.700e-27
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M NVVELKVGLHCDECIKKILKAIKKIQDIETYN+DTQLNKVTVTGNVT EEVI+VIHKI
Sbjct: 1  MANVVELKVGLHCDECIKKILKAIKKIQDIETYNVDTQLNKVTVTGNVTTEEVIKVIHKI 60

Query: 61 GKTATTWDDRQ 72
          GKTA+TW+  Q
Sbjct: 61 GKTASTWEAEQ 71
[Close]
BLAST of Spo00383.1 vs. NCBI nr
Match: gi|566191590|ref|XP_006378648.1| (hypothetical protein POPTR_0010s19000g [Populus trichocarpa])

HSP 1 Score: 127.9 bits (320), Expect = 8.200e-27
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1 

		  

Query: 1   MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
           M NVVELKVGLHCDECIKKILKAIKKIQDIETY+IDTQLNKVTVTGNV+ EEVIRVIHKI
Sbjct: 83  MANVVELKVGLHCDECIKKILKAIKKIQDIETYDIDTQLNKVTVTGNVSSEEVIRVIHKI 142

Query: 61  GKTATTWD 69
           GKTATTW+
Sbjct: 143 GKTATTWE 150
[Close]
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJ29_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066130 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 2.700e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI
Sbjct: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60

Query: 61 GKTATTWDDRQQSNSVASGYM 82
          GKTATTWDDRQQSNSVASGYM
Sbjct: 61 GKTATTWDDRQQSNSVASGYM 81
[Close]
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHG2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g044470 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.700e-31
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          MTN+VEL+VGLHCDECIKKILKAIKKI+DIETYN+DT+LNKVTVTGNVTEEEVIRVIHKI
Sbjct: 1  MTNMVELRVGLHCDECIKKILKAIKKIEDIETYNVDTRLNKVTVTGNVTEEEVIRVIHKI 60

Query: 61 GKTATTWDDRQQSNSVAS 79
          GKTATTWDDRQQ N+ A+
Sbjct: 61 GKTATTWDDRQQLNNFAA 78
[Close]
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: U5FZ85_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19000g PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.700e-27
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1 

		  

Query: 1   MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
           M NVVELKVGLHCDECIKKILKAIKKIQDIETY+IDTQLNKVTVTGNV+ EEVIRVIHKI
Sbjct: 83  MANVVELKVGLHCDECIKKILKAIKKIQDIETYDIDTQLNKVTVTGNVSSEEVIRVIHKI 142

Query: 61  GKTATTWD 69
           GKTATTW+
Sbjct: 143 GKTATTWE 150
[Close]
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: M1C7P7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023960 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.100e-25
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M NVVELKVGLHCDECIKKILK IKKI+DIETY++DTQLNKVTVTGNVT EEVI+V+HKI
Sbjct: 1  MANVVELKVGLHCDECIKKILKTIKKIEDIETYDVDTQLNKVTVTGNVTTEEVIKVLHKI 60

Query: 61 GKTATTWDDRQQSN 75
          GK A+ WD  QQS+
Sbjct: 61 GKQASNWD--QQSS 72
[Close]
BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RKE7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G072400 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.200e-24
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          MTNVVE+KVGLHCD+CIKKILKAIKKI+DIETYN++ QLNKV VTGNVT EEVIRV+HKI
Sbjct: 1  MTNVVEVKVGLHCDDCIKKILKAIKKIEDIETYNVEKQLNKVIVTGNVTTEEVIRVLHKI 60

Query: 61 GKTATTWDDRQ 72
          GK AT W++ Q
Sbjct: 61 GKNATPWEEAQ 71
[Close]
BLAST of Spo00383.1 vs. ExPASy Swiss-Prot
Match: CCH_ARATH (Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.200e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M   V LKVG+ C  C+  + + + K++ +E+++ID +  KVTV GNV  E V + + K 
Sbjct: 1  MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 GKTATTW 68
          GK  + W
Sbjct: 61 GKKTSYW 67
[Close]
BLAST of Spo00383.1 vs. ExPASy Swiss-Prot
Match: ATOX1_ARATH (Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.600e-6
Identity = 21/68 (30.88%), Postives = 42/68 (61.76%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M+  V L+V + C+ C+  + + + K++ +E++++D +  KVTV GNV  + V++ + K 
Sbjct: 1  MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 60

Query: 61 GKTATTWD 69
          GK    W+
Sbjct: 61 GKKTAFWE 68
[Close]
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 112.8 bits (281), Expect = 9.600e-26
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M NVVELKV LHCDECI+KILKAIKKI+DIE Y++DTQLNKVTVTGNVTEE+VIRV+ K+
Sbjct: 1  MANVVELKVNLHCDECIRKILKAIKKIEDIEAYDVDTQLNKVTVTGNVTEEQVIRVLQKV 60

Query: 61 GKTATTWDDRQQS 74
           K A  WD   Q+
Sbjct: 61 RKAAVKWDQDNQT 73
[Close]
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 5.700e-10
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1 

		  

Query: 3  NVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKIGK 62
          ++VEL V + C  C KK+ +AI K+  ++T  ID    KVTVTG V  EEV++++ + G+
Sbjct: 16 SIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGR 75

Query: 63 TATTW 68
          TA  W
Sbjct: 76 TAEYW 80
[Close]
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-9
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1 

		  

Query: 7   LKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKIGKTATT 66
           L+V +HC+ C +KI K + KI  + T NID +  KVTV GNV  E +I+ I K G+ A  
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRHAEL 93

Query: 67  WDDRQQSN 75
           W    ++N
Sbjct: 94  WPTSMENN 101
[Close]
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.700e-9
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1 

		  

Query: 7  LKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKIGKTATT 66
          LKV +HCD C +K+ K ++KI+ + T  ID +L KVTV+GNV    +I+ + K GK A  
Sbjct: 14 LKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGKVTVSGNVDPSVLIKKLLKSGKHAEI 73

Query: 67 W 68
          W
Sbjct: 74 W 74
[Close]
BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Match: AT3G56240.1 (copper chaperone)

HSP 1 Score: 55.1 bits (131), Expect = 2.400e-8
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1 

		  

Query: 1  MTNVVELKVGLHCDECIKKILKAIKKIQDIETYNIDTQLNKVTVTGNVTEEEVIRVIHKI 60
          M   V LKVG+ C  C+  + + + K++ +E+++ID +  KVTV GNV  E V + + K 
Sbjct: 1  MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60

Query: 61 GKTATTW 68
          GK  + W
Sbjct: 61 GKKTSYW 67
The following BLAST results are available for this feature:
BLAST of Spo00383.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221532|gb|KNA18939.1|3.9e-37100.hypothetical protein SOVF_0661... [more]
gi|731362466|ref|XP_010692900.1|2.5e-3188.4PREDICTED: copper transport pr... [more]
gi|731362468|ref|XP_010692901.1|1.4e-2985.9PREDICTED: copper transport pr... [more]
gi|1009121533|ref|XP_015877508.1|3.7e-2788.7PREDICTED: copper transport pr... [more]
gi|566191590|ref|XP_006378648.1|8.2e-2792.6hypothetical protein POPTR_001... [more]
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BLAST of Spo00383.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RJ29_SPIOL2.7e-37100.Uncharacterized protein OS=Spi... [more]
A0A0J8BHG2_BETVU1.7e-3188.4Uncharacterized protein OS=Bet... [more]
U5FZ85_POPTR5.7e-2792.6Uncharacterized protein OS=Pop... [more]
M1C7P7_SOLTU9.1e-2581.0Uncharacterized protein OS=Sol... [more]
A0A0S3RKE7_PHAAN1.2e-2480.2Uncharacterized protein OS=Vig... [more]
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BLAST of Spo00383.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCH_ARATH4.2e-737.3Copper transport protein CCH O... [more]
ATOX1_ARATH3.6e-630.8Copper transport protein ATX1 ... [more]
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BLAST of Spo00383.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G05365.19.6e-2673.9Heavy metal transport/detoxifi... [more]
AT3G56891.15.7e-1043.0Heavy metal transport/detoxifi... [more]
AT5G27690.12.8e-942.6Heavy metal transport/detoxifi... [more]
AT5G19090.13.7e-945.9Heavy metal transport/detoxifi... [more]
AT3G56240.12.4e-837.3copper chaperone[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006121Heavy metal-associated domain, HMAPFAMPF00403HMAcoord: 8..62
score: 5.7
IPR006121Heavy metal-associated domain, HMAPROFILEPS50846HMA_2coord: 10..66
score: 11
IPR006121Heavy metal-associated domain, HMAunknownSSF55008HMA, heavy metal-associated domaincoord: 3..68
score: 1.57
NoneNo IPR availableGENE3D3.30.70.100coord: 2..66
score: 9.2
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 1..68
score: 3.7
NoneNo IPR availablePANTHERPTHR22814:SF60HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEINcoord: 1..68
score: 3.7

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
molecular_function GO:0046872 metal ion binding