Spo00473.1 (mRNA)

Overview
NameSpo00473.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00976 : 108760 .. 110334 (-)
Sequence length621
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGCTTTCTCTCCCTTCCCCTCAAACTCTCCGCCTCTCCTCAAACACGCCGCCCTCCTCGGCGTCCTTCGAGTTCTCATCCATGGCGACGACGCCGTTGGAGAGGCCCCTCCTTTACCCCTCTCTCTCTCTTCTCCAACACTATGCTTTTGAAACCCTAAGATTTCTAACATGGCGTCGAAGAAGAAAATTCTCAGAGGTTTTCGATTTTGTACGGGTTTAGACGCGGCGGTGGTGTGGTTGTTGGTGGCGTTGTGCGGGTCGAGACGGAGGGATGAGAGACATAGATCCAGGTTTTTGGCTGCCTCACTCTTTCTTCTACTTCAAGTTTTATTGCTCTTAGGTTTTTGAGTTTTTTTTATTAATTTTGTTGATTTTCCGGCGAGGTTGTTGAACAGAGACGAAGGAATGTAGGTGGCGGTTCTCCTTGAGGTGGCACGACGGGACATCGGCGGTGATCGTTGAGGAGACGCGAGAAGAAGATCCTCTTTTGTAGATCGAGATCGAACAGATGGTTGGCTATGGAAGAACAGCTGCAGAAGCCATATCTAGGTTGCAAACACCGACCGGAAGCTGCAAGCGTAGGAAGAACAGGTAGGTTGCAGTGTATTGTGATAATGTATGCTTATGTGGTTTTATTAATTTTGGTTTCAAATTTGTATTGTGATTTTGATGATGTTTATTGTATTTGATGATTGGATTTGAGTCCTTTGGCTGTTGCAGTGTTTGCTCGATTCTGGTTGCAAGTGGTTGTACTTCTATTCATTTGGCGTATTGTTAGTGCTATTGTAAAATAAACATGCTAGTTAAGTAGTTATGATAAAGTTTGTTTTATTTAGGATTAAGTTTGTTTTAGTTATGATAAAGTCTTTAATAGTTAAATACTTTTATTTAATTTTGCGATTCAAGCCGTGATTTGGGGCTCTTAAGTTAAACTTTTGTTGCATTTAGTTATGAAATAGGATGCTTTAGTTATATTTTCTTCATTTATGTCAATTATTGACAGTAATGATTTTAGTTTCCAATTGATTCGACTGTCGAATAAGAATGGTTTATCTATCAGAAGTGATAAATTTTAGGTCGTTCGGTTCTGTCAATTAATCTGTCATGGATAGGAGTATAGGACCACCCTGTGTAGCACGCTGCTTAATACTGCTTTTGTTTAACAGCTTGGAACGCTGCTTGTTGCTTTCAGAACCAATCTAATGAAGGATGCTTGTTCTTTTATGATTTATTCTAGCCAAAGCAGGTTCAGATGAGATGCTAGTCTGCTTTATCTGCTCAACTGTTTTCTGTTGTTTGTGTTCTGGTTGTCTGCAGTTGCCTCTGTATAGTTAATTGTTGGTCTGCTAGATCTGATGTACCATGGATCAGTTGAAAGAAATGGAAATGCAGGGGGTAGAACTGTTGTGTTTGATCGCTGATTTCTGCTGCCTAATGAAGCGTGGAACATGGGCAGAAAGTGTGGCAGTCGAGATGTATCATGGGCAGAAATGCGAGAGAATCAGTTGGGACACTTGCGAGAGAATCTTGGAAGCGCGGCAGTCAAGATGTATCATGGGCAGAAATGCTATGA

mRNA sequence

GCGCTTTCTCTCCCTTCCCCTCAAACTCTCCGCCTCTCCTCAAACACGCCGCCCTCCTCGGCGTCCTTCGAGTTCTCATCCATGGCGACGACGCCGTTGGAGAGGCCCCTCCTTTACCCCTCTCTCTCTCTTCTCCAACACTATGCTTTTGAAACCCTAAGATTTCTAACATGGCGTCGAAGAAGAAAATTCTCAGAGGTTTTCGATTTTGTACGGGTTTAGACGCGGCGGTGGTGTGGTTGTTGGTGGCGTTGTGCGGGTCGAGACGGAGGGATGAGAGACATAGATCCAGAGACGAAGGAATGTAGGTGGCGGTTCTCCTTGAGGTGGCACGACGGGACATCGGCGGTGATCGTTGAGGAGACGCGAGAAGAAGATCCTCTTTTGTAGATCGAGATCGAACAGATGGTTGGCTATGGAAGAACAGCTGCAGAAGCCATATCTAGGTTGCAAACACCGACCGGAAGCTGCAAGCGTAGGAAGAACAGCGTGGAACATGGGCAGAAAGTGTGGCAGTCGAGATGTATCATGGGCAGAAATGCGAGAGAATCAGTTGGGACACTTGCGAGAGAATCTTGGAAGCGCGGCAGTCAAGATGTATCATGGGCAGAAATGCTATGA

Coding sequence (CDS)

ATGGTTGGCTATGGAAGAACAGCTGCAGAAGCCATATCTAGGTTGCAAACACCGACCGGAAGCTGCAAGCGTAGGAAGAACAGCGTGGAACATGGGCAGAAAGTGTGGCAGTCGAGATGTATCATGGGCAGAAATGCGAGAGAATCAGTTGGGACACTTGCGAGAGAATCTTGGAAGCGCGGCAGTCAAGATGTATCATGGGCAGAAATGCTATGA

Protein sequence

MVGYGRTAAEAISRLQTPTGSCKRRKNSVEHGQKVWQSRCIMGRNARESVGTLARESWKRGSQDVSWAEML
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00473Spo00473gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00473.1Spo00473.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00473.1.utr5p.2Spo00473.1.utr5p.2five_prime_UTR
Spo00473.1.utr5p.1Spo00473.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00473.1.CDS.2Spo00473.1.CDS.2CDS
Spo00473.1.CDS.1Spo00473.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00473.1.exon.3Spo00473.1.exon.3exon
Spo00473.1.exon.2Spo00473.1.exon.2exon
Spo00473.1.exon.1Spo00473.1.exon.1exon


Homology
[Close]
BLAST of Spo00473.1 vs. NCBI nr
Match: gi|902157222|gb|KNA06104.1| (hypothetical protein SOVF_184180 isoform B [Spinacia oleracea])

HSP 1 Score: 61.2 bits (147), Expect = 8.300e-7
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 1  MVGYGRTAAEAISRLQTPTGSCKRRKNSVE 31
          MVGYGRTAAEAISRLQTPTGSCKRRKNS+E
Sbjct: 1  MVGYGRTAAEAISRLQTPTGSCKRRKNSLE 30
[Close]
BLAST of Spo00473.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFS5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_184180 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.800e-7
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 1  MVGYGRTAAEAISRLQTPTGSCKRRKNSVE 31
          MVGYGRTAAEAISRLQTPTGSCKRRKNS+E
Sbjct: 1  MVGYGRTAAEAISRLQTPTGSCKRRKNSLE 30
The following BLAST results are available for this feature:
BLAST of Spo00473.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902157222|gb|KNA06104.1|8.3e-796.6hypothetical protein SOVF_1841... [more]
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BLAST of Spo00473.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QFS5_SPIOL5.8e-796.6Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00473.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00473.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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