Spo00564.1 (mRNA)

Overview
NameSpo00564.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02641 : 15402 .. 27189 (+)
Sequence length455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATGCTAATAATCAGCACTGGTGTTATTTCAGGAAATCAGGTATTGTTTTCAAACTATTTCGTCGTCGAAGTTATCATCATGCTATGCTGGTTACTTTCCAATTTGTTTAGGTTGCTAAATTTCATCGCGCAATTCATGTTAAGGGTTTGTAAGAATTAGAAATCATGATTTCTGAATGTTTTTGCTGAGGGTATGTTACAAAGTAACTTTTGTATACACATTTGAAATTATTGGAAATATCTACTATTGTTCATGTAATCATGTTAATTGTTAAGTGTATTTGGGAAAGAGTGTGTTTAGGGGGCTGTTTGTCTTGGATTTTTGCACTGGGTCGAATATGATCGATTTTACCGGCTAATTTCGGGTTTGGTTCACTTCTTGGTTGAGCAATGTTAGTGGAATATCTCTCTTGTTTGCTTTAAAATTTAGGATTGTAGCAAATAATCTCATGAAAGAAGTCAGGACATCCTAATTGGACCTGGATTTGCGGCATCTTAGTCTATTTTGCTAAGCAAACCATGTCTATGGAGTATGGACTAGATTAAGCTTGGAAGAGTTGGAAATTTGGAATATATAGTTGCGTACACTCTGTATGTGTAACGTGTTGCCTCACTAAAGCTTAGTTTAGGCTCAACCCATCTTTGGTTAATGTAGAATACCATTGTTGATGTTGTAAGACCATAGTCTTACATGGAAGACTTCTTAGAATCCAGCATTGACAGTTAACTGGCTTGAGTATTGCTTTAACGTTTTTATAGTATTATAAACATAAATAAACAACTCCGCAAGAAAATATTGGGAAGCATTAGTTACTGATATGCAATTGATTATGTTTAAGAGATCACGGGGGTATTTAGTTCGTGTATTGTTGGTATGACTTATGAGTAGACCTGGTTATTGGACAGGGTAGTCCAATGGATATAGGGTTAGGGTCCAGTTAATAGGGCTTTTATTGGGCAGGGCTCTTATTGGACAGGGCCTTTATTGGATAGGGTCATTATAGGGTCAAACTTATACTACAATTAGTTTGAAAATAAAAATAGTAATGATACAAAAAATTACATGCATAGCTTCGTATTTACTTGTACTTGCACATGGCTCTTTTGTTTTTCATTTTTCATTGCTCGTTTATTGACCCGCCCAATAATGACCGCTATTGACCCGCGACCCGCTTTTGACCCGCCCATTATCGACCCTCTAAAAATGACCCTTTCAATACCCGACCCTCTTTTGACCCGCACCGACCCTGACCCGCCCCGCCCGATAACCAGGCCTACTTATGAGATATGGGTCGACCTGTGATTGTTTGGTGTGACTGCTTATCGATATAAACTGCAAAATTTTGTTTCTTGATCTCTCTAGGCCTTATCAACTGTATGATCGATACCAAGTCGTCATGGTGTAACAATGAGGCTACTAAAAAGTGCCTTTTTTTTTTTTTGTAAATCTCAATCTAGTTCTTGGATGGTCTGCATTTTTGCTGAGAATTTGAAGTACTCATATAGCTGTACTATATTAGCTACCCCTTTCCGAAGGTACTCTTTTTCTTTGCTGTTTAAAACTTCTTCAGATATTGCCCAAAGCTACTCCTCTGTGTTTTGTTGTTGACGAAGAAGCCTAAGTTTGAGATCATATGTTGGTCATATCGAGACTTCATGCATGGCTTCCCAATATTATTCATTCTTTAGGGCTATTAATTTGCATTATTATATACGTTTCTAATATCACAATTTCTTATTAAAAGCTAGTATACAATATTTATTGTACATTGGAGTAAAAGTTAAGTAAAAATGTTTAAAAGTTACCCCAGTATAATGTAAAATGATAAAATGTTTCGCTTCAATAAAATTATCCCGTCAAAGTAATTATGTAACTATTTAAAATGTTTATCCGTCAAAAATAAATTGATAATATAAGAATTAATCAAAGCATATTAAAAGTTACGAAAATTTAGTTAAAAGTTACTCCGAGATAAAATAAATTTAGTGCACCTAGTGCGTGCAGAACCTTTTGTTCTTATATAGTGTTCCACTGTGTTAATTTAAGGATGTGGCTTGAGTTATTTTAGAAAGTAAATTATGTTCCTGGATTTGAAGTACAAAGTACTTTTATTAGCTTATAAATGGGTTGGGGCTCTAAGGTAATAGTTTTTATGTTTCCAATAAGTGAGTTAGTGAGTGTATAATCAAATTTCTTGGAACCATTTCCATTCTGAATTGCTAAATTTAAAGCTTGTTTCCATTTTTCAGATTCTATTGCAGATATCCATAACAATGTGGGATCTCAGCCTGGTATGCTGACACTTCCTGCTAATCCCCTGCCAATCCATTTCTCTGCAGCCGGTTCTGAAATTATCCAAGGTGGTTTGTGCGCGTATGTGCAGATATTTCCAAGGTCTACCTTTGAGTTTGTACAAATTAAAGTAAGTACAATCCTTGATTGAATTTAATACTCTATATGTTGTGGTTCTATATTCTTCAAAGGTCTCATATTTAAACTTTATGACATTGTATGCATATAATGCATTTATAATTGTACAGAGATAAATATTGTATGTCCTAGACTAGATTAATACTTGAATATCAACTGTGCAAAGAAGCTGCCAAATGCCAATAGTAAATGAGAGCTTTGTTGCTTTGAGTTTATTGCTAGTTTTGCTTGGATGAAAGAAGGGAGTAGGTACTTACTGCCTTTGACTTAATGTGAGATGGCAGGAAAAAGAAAATTTGGTTTTCCATTATCTGTGTAACTCAGGTTATCAAATCTTTTTTTTCCTATGAATGCAACGGCTTCTTTGCTAATTTTTGGCTTCTTGTTTTATATTGTGATACTAGCTCATTTATTTTCCGTGTGATCTTAAGGTGTTTGACTTTGGCTTATAAATGGTATTCTTGCAACATTCGTTTTTCCAGAACATGTTTTTATCTCAGCAGATGTCAAACTAAACTGGTTAAAGGTTCTCTTTGCATGGTCATAGATTGTAGGATCTCTGCATCTGTTTCATTTAGTTCATTTATAACATAAGAAGTTGGAGCTGCTGAAATCGCAGCTCCTAGACATGGGTGCGTCAGGGAAGTTATTTGAATGATTTCCAAATGGCTATATCATGCTATATGTAGAAATATTAAGAGGAAACTGGAGAATTTGGTCTTGCCTTTTTTGGGAAACTCTCCCCTGCAATTTTTCTTCCGGCAAAACTACAAATTGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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CTTGGATCCTTTTCAGTCTTCTTAATCCTAGAGGTAAGCTTCCAGTAAAGAAATTATCAGACATGACAAGTGAAGTTAACTTGCTGAGCTTAGTAACACTGTCAGGAACTGGTCCTCTGAACTTGTTTCTGCTCAAGTTAAGGATGGTGAGCTCAGTCAAGTTACCAATATCGCTAGTGAGAAATCCATCATAACCAACACCATCTAAGTCAAGTATCGTGATACGGCTGGTTGAGTTGTTGTCCTCTGGAATTGAGCAGAGGATACCGAGGAAGTGGGCCCCTGTGCTCTCACAAGGGTCAAGTGCGAAATCCCAGGAACTGATGAATGAATTGCTGGGAATGGAGTTTGGATCAATCCCTTCTTTTAATGCCCGAAGGACATCGACTTCTGTGCTTAAGGTGATCGAGTGAACTGATATTGATCTGAAAATGGCAAGAATGACCGCCATGAACAAGTAATAAGACATCTTCTGGTTCTCGTTATGTGCCATCGATGTAGTTAAGGTTTGTGTTGTAGTAAATGTGGTTGAATTGATGAAGATTATGCAGTGAAGCTGTTTATATATTGAATTACTCGAAATTAAGAGAGAGAAAAAGAATGTAGCATGAGATACTTCATATCAAGAACCTGTTAATTTTATCAATTATTTGTAAGCTTAGGAAGATGGTGAATCATTTGTTTTGGCAGTCTGCAATAAATAAAGGCATCATTTGAAGAGGTTAGATCAACCTAAACTTCTTTCTTAATTGATCTGTTAGAACACTTCCTTTTTCTGTCTTTCTTTGGATCAAATTTTTTTTGCTTTCTTTTATCTCTATTTCTTGGTGTATGTTTAGTTATTATATGATGTGCAATATTTGGGTGATGAGCTGAGCCCTCTGATTTGGTTTGTCAATAGTGAACCATTTGTTTGTTATGGAAAAAAGATATTTTTTGCGTAGTTTTGGTTTGAGTTGGTAAATTTCGATTCTAATGATGTGTTACTTCCTCCCTATTTTTTCAGGGGTCACATATATTATTTCCGACCGTCTTTTTTTAGGGGCCATATTTTCATTTTTGGTAACTTTTCTAACACACCTCCTAATTATCTAATACTCCGTATATCTAACTTTCTCTAGGGGCCACCACTAAACAATTGTTTTCATTAGACTCGCCCTCCACCCCTCAAAAATATTATAATCCCCACTCTGTTTCGTTGATTAAAATATTTACCCCACCCCACTTGTTTTACGGAGTATTATTATTTGATTAACTCTCCTTCCTCAATCCGTGTGCCGATCAACATGTAACCCCTAGGGAGTATCAAGTTTGGTTATAGTTTGGGTCTAGGTTGGATCATTCAAAATAAGTCATTTCGGGTTAGGTCGTTGTTAGTTTTCACCCAATTAGAGTTCTCTATGCTTTTTGTGTTTTGTTTGTGATGTAGTTTAAGCTGAAGTGATGTAACCTAATTGACAAACACCAAAAAATGTTTTTTTTACATAGGATAAAAGGACAAAAACAAAAACAAGAACTTAACCTAGAAGAAAAAGAGACAATCTAATCGAATTCTGGCGGGTGGAGTGTAGGAACAATGCCATTCACAACTGCAGACTTATGTGCAAATGAGCTTTGTGAAAAGATTTGCTCTCACACATAACATTGGAATGACTTAACACCAAAGAATGTCAAGATTGTGGATTTCTTAGCCAACATAATGATATTTTCTCGTAGGGCTCCATCTTCTGCACTTTTCCTGCCCTCACAGATGCTCGTGACAGTCACATCATCGTTTCGAACGGTGTC

mRNA sequence

GAAATGCTAATAATCAGCACTGGTGTTATTTCAGGAAATCAGATTCTATTGCAGATATCCATAACAATGTGGGATCTCAGCCTGGTATGCTGACACTTCCTGCTAATCCCCTGCCAATCCATTTCTCTGCAGCCGGTTCTGAAATTATCCAAGGTGGTTTGTGCGCGTATGTGCAGATATTTCCAAGGTCTACCTTTGAGTTTGTACAAATTAAAATGTTCACAATGCTATTAGTTTCAGATGTCATTGCCTTATCAAGAGATGAGGAAACAAAGTACACCTCCCACCAGAAAGTTGTGATTGAAGAAAACATGCCTCCAAGGAGCACCAAGTCTCACCCCAAAACTCTTTGGTATAGGTCCAGAAAGCTGGTTGTGACTCAGGGCTCCATCTTCTGCACTTTTCCTGCCCTCACAGATGCTCGTGACAGTCACATCATCGTTTCGAACGGTGTC

Coding sequence (CDS)

ATGCTGACACTTCCTGCTAATCCCCTGCCAATCCATTTCTCTGCAGCCGGTTCTGAAATTATCCAAGGTGGTTTGTGCGCGTATGTGCAGATATTTCCAAGGTCTACCTTTGAGTTTGTACAAATTAAAATGTTCACAATGCTATTAGTTTCAGATGTCATTGCCTTATCAAGAGATGAGGAAACAAAGTACACCTCCCACCAGAAAGTTGTGATTGAAGAAAACATGCCTCCAAGGAGCACCAAGTCTCACCCCAAAACTCTTTGGTATAGGTCCAGAAAGCTGGTTGTGACTCAGGGCTCCATCTTCTGCACTTTTCCTGCCCTCACAGATGCTCGTGACAGTCACATCATCGTTTCGAACGGTGTC

Protein sequence

MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIKMFTMLLVSDVIALSRDEETKYTSHQKVVIEENMPPRSTKSHPKTLWYRSRKLVVTQGSIFCTFPALTDARDSHIIVSNGV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00564Spo00564gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00564.1Spo00564.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00564.1.exon.1Spo00564.1.exon.1exon
Spo00564.1.exon.2Spo00564.1.exon.2exon
Spo00564.1.exon.3Spo00564.1.exon.3exon
Spo00564.1.exon.4Spo00564.1.exon.4exon
Spo00564.1.exon.5Spo00564.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00564.1.utr5p.1Spo00564.1.utr5p.1five_prime_UTR
Spo00564.1.utr5p.2Spo00564.1.utr5p.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00564.1.CDS.1Spo00564.1.CDS.1CDS
Spo00564.1.CDS.2Spo00564.1.CDS.2CDS
Spo00564.1.CDS.3Spo00564.1.CDS.3CDS
Spo00564.1.CDS.4Spo00564.1.CDS.4CDS


Homology
[Close]
BLAST of Spo00564.1 vs. NCBI nr
Match: gi|902183249|gb|KNA10086.1| (hypothetical protein SOVF_147680, partial [Spinacia oleracea])

HSP 1 Score: 93.6 bits (231), Expect = 2.600e-16
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 

		  

Query: 1  MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIKMFTML 49
          MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIK+ T+L
Sbjct: 15 MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIKVSTIL 62
[Close]
BLAST of Spo00564.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUA4_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_147680 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.800e-16
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 1 

		  

Query: 1  MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIKMFTML 49
          MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIK+ T+L
Sbjct: 15 MLTLPANPLPIHFSAAGSEIIQGGLCAYVQIFPRSTFEFVQIKVSTIL 62
The following BLAST results are available for this feature:
BLAST of Spo00564.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902183249|gb|KNA10086.1|2.6e-1693.7hypothetical protein SOVF_1476... [more]
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BLAST of Spo00564.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QUA4_SPIOL1.8e-1693.7Uncharacterized protein (Fragm... [more]
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BLAST of Spo00564.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00564.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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