Spo00626.1 (mRNA)

Overview
NameSpo00626.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47)
Locationchr3 : 56082044 .. 56082487 (+)
Sequence length444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAACGGCGATGGAATAGCTGTTGGATGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGACGTGAACTCTTTGTACGACGTATGCCTACTTTTTTTGAAACCTTTCCGGTCGTTTTGATAGATGGGGACGGAATTGTTCGAGCTGATGTTCCTTTTAGAAGAGCAGAATCTAAGTATAGCGTTGAACAAGTAGGTGTAACTGTTGAGTTTTACGGCGGCGAACTAAACGGAGTTAGTTATAGCGATCCTGCTACTGTCAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTCGAATTAGACCGTGCTACTTTGAAATCAGATGGTGTTTTTCGCAGTAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCCCTATACGGGAACACACAAAAAAATATACACAGAGAAAGAGACGACACACACAAGAGTTAG

mRNA sequence

ATGGACAACGGCGATGGAATAGCTGTTGGATGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGACGTGAACTCTTTGTACGACGTATGCCTACTTTTTTTGAAACCTTTCCGGTCGTTTTGATAGATGGGGACGGAATTGTTCGAGCTGATGTTCCTTTTAGAAGAGCAGAATCTAAGTATAGCGTTGAACAAGTAGGTGTAACTGTTGAGTTTTACGGCGGCGAACTAAACGGAGTTAGTTATAGCGATCCTGCTACTGTCAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTCGAATTAGACCGTGCTACTTTGAAATCAGATGGTGTTTTTCGCAGTAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCCCTATACGGGAACACACAAAAAAATATACACAGAGAAAGAGACGACACACACAAGAGTTAG

Coding sequence (CDS)

ATGGACAACGGCGATGGAATAGCTGTTGGATGGTTAGGACACCCTATTTTTAGAGATAAAGAAGGACGTGAACTCTTTGTACGACGTATGCCTACTTTTTTTGAAACCTTTCCGGTCGTTTTGATAGATGGGGACGGAATTGTTCGAGCTGATGTTCCTTTTAGAAGAGCAGAATCTAAGTATAGCGTTGAACAAGTAGGTGTAACTGTTGAGTTTTACGGCGGCGAACTAAACGGAGTTAGTTATAGCGATCCTGCTACTGTCAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTCGAATTAGACCGTGCTACTTTGAAATCAGATGGTGTTTTTCGCAGTAGTCCGAGGGGTTGGTTTACTTTTGGACATGCTTCCCTATACGGGAACACACAAAAAAATATACACAGAGAAAGAGACGACACACACAAGAGTTAG

Protein sequence

MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASLYGNTQKNIHRERDDTHKS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00626Spo00626gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00626.1Spo00626.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00626.1.exon.1Spo00626.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00626.1.CDS.1Spo00626.1.CDS.1CDS


Homology
[Close]
BLAST of Spo00626.1 vs. NCBI nr
Match: gi|959122459|ref|YP_009183015.1| (photosystem II CP47 chlorophyll apoprotein (plastid) [Plantago maritima])

HSP 1 Score: 270.8 bits (691), Expect = 1.400e-69
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASL 130
           WFTFGHASL
Sbjct: 450 WFTFGHASL 458
[Close]
BLAST of Spo00626.1 vs. NCBI nr
Match: gi|27446519|gb|AAG12383.1| (photosystem II CP47 protein [Rheum x hybridum])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 317 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 376

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 377 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 436

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 437 WFTFGHAS 444
[Close]
BLAST of Spo00626.1 vs. NCBI nr
Match: gi|12278|emb|CAA26691.1| (unnamed protein product (chloroplast) [Spinacia oleracea])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. NCBI nr
Match: gi|305672023|gb|ADM63396.1| (photosystem II cp47 protein, partial (chloroplast) [Ilex crenata])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 320 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 379

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 380 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 439

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 440 WFTFGHAS 447
[Close]
BLAST of Spo00626.1 vs. NCBI nr
Match: gi|910354342|ref|YP_009160828.1| (PsbB (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 269.2 bits (687), Expect = 4.100e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: A0A0S1EIH0_9LAMI (Photosystem II CP47 reaction center protein OS=Plantago maritima GN=psbB PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 9.900e-70
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHASL 130
           WFTFGHASL
Sbjct: 450 WFTFGHASL 458
[Close]
BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: H6T962_MOLVE (Photosystem II CP47 reaction center protein (Fragment) OS=Mollugo verticillata GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: G4WP22_CLAVI (Photosystem II CP47 reaction center protein (Fragment) OS=Claytonia virginica GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 283 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 342

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 343 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 402

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 403 WFTFGHAS 410
[Close]
BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K898_9CARY (Photosystem II CP47 reaction center protein OS=Haloxylon ammodendron GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Match: Q8HS22_9CARY (Photosystem II CP47 reaction center protein (Fragment) OS=Rheum rhabarbarum GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.900e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 317 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 376

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 377 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 436

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 437 WFTFGHAS 444
[Close]
BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_FAGEA (Photosystem II CP47 reaction center protein OS=Fagopyrum esculentum subsp. ancestrale GN=psbB PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.600e-71
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_SPIOL (Photosystem II CP47 reaction center protein OS=Spinacia oleracea GN=psbB PE=1 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 2.600e-71
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_NANDO (Photosystem II CP47 reaction center protein OS=Nandina domestica GN=psbB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.400e-71
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_CARPA (Photosystem II CP47 reaction center protein OS=Carica papaya GN=psbB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.400e-71
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Match: PSBB_LOTJA (Photosystem II CP47 reaction center protein OS=Lotus japonicus GN=psbB PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.400e-71
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
[Close]
BLAST of Spo00626.1 vs. TAIR (Arabidopsis)
Match: ATCG00680.1 (photosystem II reaction center protein B)

HSP 1 Score: 266.5 bits (680), Expect = 9.400e-72
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 1 

		  

Query: 1   MDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESK 60
           MDNGDGIAVGWLGHP+FR+KEGRELFVRRMPTFFETFPVVL+DGDGIVRADVPFRRAESK
Sbjct: 330 MDNGDGIAVGWLGHPVFRNKEGRELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESK 389

Query: 61  YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 120
           YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG
Sbjct: 390 YSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRG 449

Query: 121 WFTFGHAS 129
           WFTFGHAS
Sbjct: 450 WFTFGHAS 457
The following BLAST results are available for this feature:
BLAST of Spo00626.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|959122459|ref|YP_009183015.1|1.4e-6999.2photosystem II CP47 chlorophyl... [more]
gi|27446519|gb|AAG12383.1|4.1e-69100.photosystem II CP47 protein [R... [more]
gi|12278|emb|CAA26691.1|4.1e-69100.unnamed protein product (chlor... [more]
gi|305672023|gb|ADM63396.1|4.1e-69100.photosystem II cp47 protein, p... [more]
gi|910354342|ref|YP_009160828.1|4.1e-69100.PsbB (chloroplast) [Haloxylon ... [more]
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BLAST of Spo00626.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0S1EIH0_9LAMI9.9e-7099.2Photosystem II CP47 reaction c... [more]
H6T962_MOLVE2.9e-69100.Photosystem II CP47 reaction c... [more]
G4WP22_CLAVI2.9e-69100.Photosystem II CP47 reaction c... [more]
A0A0K0K898_9CARY2.9e-69100.Photosystem II CP47 reaction c... [more]
Q8HS22_9CARY2.9e-69100.Photosystem II CP47 reaction c... [more]
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BLAST of Spo00626.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBB_FAGEA2.6e-71100.Photosystem II CP47 reaction c... [more]
PSBB_SPIOL2.6e-71100.Photosystem II CP47 reaction c... [more]
PSBB_NANDO3.4e-7199.2Photosystem II CP47 reaction c... [more]
PSBB_CARPA3.4e-7199.2Photosystem II CP47 reaction c... [more]
PSBB_LOTJA3.4e-7199.2Photosystem II CP47 reaction c... [more]
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BLAST of Spo00626.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00680.19.4e-7297.6photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..128
score: 5.8
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 1..129
score: 8.37
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 1..129
score: 2.2E
NoneNo IPR availablePANTHERPTHR33180:SF8SUBFAMILY NOT NAMEDcoord: 1..129
score: 2.2E

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding