Spo00653.1 (mRNA)

Overview
NameSpo00653.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02294 : 62487 .. 65931 (+)
Sequence length780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGCCCGCTATTCTGCCACTTTTCAATTTCGTTATCCCGCTGCACCCTCACCTGCTCTCGTAAATTTTTTCTATTCATTCAATTTTGTCTCCGCTCTTGCAAATCCTCTCTAGTTCGAAAATTTTGGGTTTTTCATGGAAAAATTCGAGTCGTTAATTGCGACATCAGATGTTGAGCTGCTCGATAGAGCTTGACACAACGAAAAACCTGCTCAAGAAATTCTTCAATTCCAGGCTCTTTTGGTTCAGAGATCTTATCCTCAACAGATCTCGCTAGCAAATTCAATCTATGGTATACATTCTCTCTCAATCAAAAACCCTAATTTTTTTTGTAGTATAACACTTTTTAAATACAATTGACAGTCAGTTCAGAATTTCTCTTTCTTAAATTTCGTATGATAAATTAATAATACATTTATTATTAGACTACAAGATCTGGCTGAAACAACTGGAAATTTTGGTGCTTTTTAATTGGGAAAAATCTGCTAACTGGCTAACTGCTCCAATTTTGTAATAAGCTGGTTTCTTGGATTAGAAGTGAAAGAGATGCAGTTACAATTGCTTTTTCTAATTTAATATCTCACCCTTTTGCTGCTTGCTACTTGTTGAAATTGTCGATTAACCTGAATGGCAGCTCTATGCTCTCGTTATTGTCAAAATCTTAAACTTCAGATTATGCAGTTCTTGAAGCAATATCAACGGCGACTTCAGATTCGCCTAATTCATCAATTCCAGTCCAAATCAGTAGAATTTGGGTGATTAAAATTCCCAAGTTCATTTCGAGTTTCCATTATTATCTCCATATCTTGCTTATTAGTAGAATTTGGGTGTTTCAAATCCTGTGTATTCTTCTTAAAAAAAATTCGGAATGTTATTCTAATGGGTTGAGAAATTGGGGTTTCTAACTTTTTATTTATTTATTATTTTTTGGGTTTGTTTTTGGTTAAATTGAATTGAGGTCAGGTTCGAATCATTGACCTGAATTACCCGGTGATGAATTGAACTTGAAGTAACCCAATTTGATCCTTTGTCGTTGCTCTTTTCTTACGCGTTTGATTATGATTTTGGATTCCATTTATGTTTTTCTCAATTGGATTAGTTTCTCTGTTTGTTAAAATGGTCTAATATCAATTGAATTAGGAAATGAAGTTAGGGTTTGAGTTATTGCTTTTGCTAAATATGATAGAACTACATAAACGAAAACTGTAGTTTAAGCGCCTAAGGCGTTTCATGGATAAGTGTCATTGTAAAAAAGTTGTTTGTTTTGTGAATATCTTAGTAAAGAGCTTAATATTAGCAAAGAAAAATTTTATGTTTAAAAGAAATGGTTTTTTTGGAGTCACTATGAACTTCAGGAACTCGGCTTCAACGGACATCCCGAGTCAATTTCGTAATTCACCTTCGTTTTATAGAGTTCTTATGCCTTATATCTCAAATTTGTTATTTTTAATTAATTCATGTGATTTATGTCAGTTTTATCTGATATGTTTTATGCAATAAGTGCTACTCTTGGTTGTTCTTTTTCTCTGTTTTTCTTTTTCCAAATTAATTTCAGGATTGAAGAATGTTTCATCCAAATTCTGGTCATGGTTTCATGGTCTGTGCAGGACATATATGAACAAAGTTGGGTAAAAAGTATGATAAGGAGAAATCAGAAAAGTTTGACTCCTAAATCTGTTGCTTCCGTTTTAAGGTGTAAAATAAGTACTGGTGGATTGAATCTAAAATAAGTAATGTTGCTTCTGTTTTGAGTGAACTCCTAATGTTTATCTTTACTGCTGTTGTTGCTGCTACTTCTGTTTTAAGGTTTTAAATATGTTCTAAATCTTGTTATATATTGAATCTGAACATTTCAAGATGATCAGAGTTACATGTACAGAAGCAAACTAATTGAAACAAGGGTAGTTGAGTTGTTAGCATGTTGTCTAAACTCTAAAGTTCTTTTCATAGATTGAATTGATTAGGATGCTGAGTTCGTGGTTACACAAGTTTGGTTTTAGTGTTAGAATGGGTATTTGAGGTGAAATAAAGAGCCGGGAGTACCCATAGGCTTTAGGACTCACTGAGTAATTGATCTGATGACTATCCTGGAATTGCAGTGGACTATTTTCAGTCACTTTTGTCACTAAAGTTAAATGTAGTGCCTGAAGTGTTGTCATGATAATTCTTCTTTGCTGCTGGGTTTTGGCCCTTCCTAGAAGGTTCGGAAACACAGTTTTGAACTAGGTTATAACTGTGTTCAGTTTTGAATATATCAGCTATAACTGTAATTGTGTTATGTTACAGTTGCTTATGACCTCACTGTGCACCCTAACCTTCATGGTGGATATCTTGCTTTAACTTCACATGTACTTTAATGATTCTCTTTCTTCTGGTCAGTAAAATAATGTTCTTCAACCTGCTTGGATGTTTTCTTCATTAGATCGATTCAATAATGAAAATAAATTCATGTTTCCACATTAGAAACTTGTAGTATAGTACCTGTGTTATGTAACATAGTACTATACCAAAAATTTCCTTAATAGACTGATATTGAAGTTACTCTTAAACCGATGTTTTGTTACCTATCATGTTTATGTTTCCATTCAATACTGAAAATAAAATCCCACCCGACTCATGTTTCCACAACAAGCATCAACAATGATCAACATAGTTTAAATTTAGCAATCTCTTGATATGTACTGAATCATGCCGCAATGTCTACCAGAGAAAATGCTGCTAGAGTGTCAGTACGTGCTAGTCGAAAGACATGATTTTTAAGCATTAAGCATATCCGTTTTACCTTTCTTATCGGTCTTTAATTGAATCTCTCTGACACGTCCTGTGATCTCTGTAATTTTCTTTGTTCGGTCAGAGACAATATACAAGGTACATTGTCTTGATTAGGAGCTGTACCTAGTTCATCAGATGCGTTGCAGCAACGAGCTTAAAATGGTGGATTCCGATTGCCATTTGCATAATTTTTATCCTTCTCAGGGATTCCATAGCTTTTCTGCTTGGAAAATTTTATTACAACAAGGGAGGGAACAACAAATGGATGGTTACACTGGTGCTAAATTTCCCAGTTTTACTTCTCCTTTATTACATTTTTCCAGAGCAATATACCCAAGAAAACGCACCAAAAATGCAGCCTCCATTCATAAAGGGTTCATCAATCTACATAGTCTTGGGGTTGTTCGGAGTAGGAGCGAGTATGCTGTACTCAGTAGGACTTGCATATATGTCAGTCTCTACATTTTCTCTCATATGTACTTGTTCAGTGTGTTGTTGTGTACAGATGTATGCATTACTAATAAATATGACTTTTTCACTTGTTTTGTTCCAGCTTCAAGCTGAATTTCGCTATCAATGTATTGGCACTTATGCCTTGACAGAGTCAATGTTTCCCCTATTAGAGAAGGCTGCACCTGATTCCCAATTAGATGTAAATGTATTTCGCTGTTGA

mRNA sequence

GGTGCCCGCTATTCTGCCACTTTTCAATTTCGTTATCCCGCTGCACCCTCACCTGCTCTCGTAAATTTTTTCTATTCATTCAATTTTGTCTCCGCTCTTGCAAATCCTCTCTAGTTCGAAAATTTTGGGTTTTTCATGGAAAAATTCGAGTCGTTAATTGCGACATCAGATGTTGAGCTGCTCGATAGAGCTTGACACAACGAAAAACCTGCTCAAGAAATTCTTCAATTCCAGGCTCTTTTGGTTCAGAGATCTTATCCTCAACAGATCTCGCTAGCAAATTCAATCTATGAGACAATATACAAGGTACATTGTCTTGATTAGGAGCTGTACCTAGTTCATCAGATGCGTTGCAGCAACGAGCTTAAAATGGTGGATTCCGATTGCCATTTGCATAATTTTTATCCTTCTCAGGGATTCCATAGCTTTTCTGCTTGGAAAATTTTATTACAACAAGGGAGGGAACAACAAATGGATGGTTACACTGGTGCTAAATTTCCCAGTTTTACTTCTCCTTTATTACATTTTTCCAGAGCAATATACCCAAGAAAACGCACCAAAAATGCAGCCTCCATTCATAAAGGGTTCATCAATCTACATAGTCTTGGGGTTGTTCGGAGTAGGAGCGAGTATGCTGTACTCAGTAGGACTTGCATATATCTTCAAGCTGAATTTCGCTATCAATGTATTGGCACTTATGCCTTGACAGAGTCAATGTTTCCCCTATTAGAGAAGGCTGCACCTGATTCCCAATTAGATGTAAATGTATTTCGCTGTTGA

Coding sequence (CDS)

ATGCGTTGCAGCAACGAGCTTAAAATGGTGGATTCCGATTGCCATTTGCATAATTTTTATCCTTCTCAGGGATTCCATAGCTTTTCTGCTTGGAAAATTTTATTACAACAAGGGAGGGAACAACAAATGGATGGTTACACTGGTGCTAAATTTCCCAGTTTTACTTCTCCTTTATTACATTTTTCCAGAGCAATATACCCAAGAAAACGCACCAAAAATGCAGCCTCCATTCATAAAGGGTTCATCAATCTACATAGTCTTGGGGTTGTTCGGAGTAGGAGCGAGTATGCTGTACTCAGTAGGACTTGCATATATCTTCAAGCTGAATTTCGCTATCAATGTATTGGCACTTATGCCTTGACAGAGTCAATGTTTCCCCTATTAGAGAAGGCTGCACCTGATTCCCAATTAGATGTAAATGTATTTCGCTGTTGA

Protein sequence

MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGAKFPSFTSPLLHFSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYALTESMFPLLEKAAPDSQLDVNVFRC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00653Spo00653gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00653.1Spo00653.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00653.1.exon.1Spo00653.1.exon.1exon
Spo00653.1.exon.2Spo00653.1.exon.2exon
Spo00653.1.exon.3Spo00653.1.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00653.1.utr5p.1Spo00653.1.utr5p.1five_prime_UTR
Spo00653.1.utr5p.2Spo00653.1.utr5p.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00653.1.CDS.1Spo00653.1.CDS.1CDS
Spo00653.1.CDS.2Spo00653.1.CDS.2CDS


Homology
[Close]
BLAST of Spo00653.1 vs. NCBI nr
Match: gi|902217521|gb|KNA17752.1| (hypothetical protein SOVF_077180 [Spinacia oleracea])

HSP 1 Score: 301.6 bits (771), Expect = 7.400e-79
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGAKFPSFTSPLLH 60
           MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGA+FPSFTSPLLH
Sbjct: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGARFPSFTSPLLH 60

Query: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120
           FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL
Sbjct: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120

Query: 121 TESMFPLLEKAAPDSQLDVNVFRC 145
           TESMFPLLEKAAPDSQLDVNVFRC
Sbjct: 121 TESMFPLLEKAAPDSQLDVNVFRC 144
[Close]
BLAST of Spo00653.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFZ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077180 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 5.100e-79
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 1 

		  

Query: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGAKFPSFTSPLLH 60
           MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGA+FPSFTSPLLH
Sbjct: 1   MRCSNELKMVDSDCHLHNFYPSQGFHSFSAWKILLQQGREQQMDGYTGARFPSFTSPLLH 60

Query: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120
           FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL
Sbjct: 61  FSRAIYPRKRTKNAASIHKGFINLHSLGVVRSRSEYAVLSRTCIYLQAEFRYQCIGTYAL 120

Query: 121 TESMFPLLEKAAPDSQLDVNVFRC 145
           TESMFPLLEKAAPDSQLDVNVFRC
Sbjct: 121 TESMFPLLEKAAPDSQLDVNVFRC 144
The following BLAST results are available for this feature:
BLAST of Spo00653.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902217521|gb|KNA17752.1|7.4e-7999.3hypothetical protein SOVF_0771... [more]
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BLAST of Spo00653.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RFZ4_SPIOL5.1e-7999.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00653.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00653.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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