Spo00782.1 (mRNA) | SpinachBase

Overview


Name	Spo00782.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 97061696 .. 97061893 (+)
Sequence length	198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTCTATGAGCATCAACTCATTCACATTCTTTGTTGCTGCTATCCTCGCAATCGTTGCTTCAGTTAATGCTCAAGAGATGGCTCCATCACCGGCACCAGCCGCCGGAGCTGGGTTCTCTCTCCCTGTTTCTACGGCCGTCGTTGCTTTCTCTCTTCTATTTTCCGTATTTTCTCTCATCTTTAAGCATTAA

mRNA sequence

ATGGCAAAGTCTATGAGCATCAACTCATTCACATTCTTTGTTGCTGCTATCCTCGCAATCGTTGCTTCAGTTAATGCTCAAGAGATGGCTCCATCACCGGCACCAGCCGCCGGAGCTGGGTTCTCTCTCCCTGTTTCTACGGCCGTCGTTGCTTTCTCTCTTCTATTTTCCGTATTTTCTCTCATCTTTAAGCATTAA

Coding sequence (CDS)

ATGGCAAAGTCTATGAGCATCAACTCATTCACATTCTTTGTTGCTGCTATCCTCGCAATCGTTGCTTCAGTTAATGCTCAAGAGATGGCTCCATCACCGGCACCAGCCGCCGGAGCTGGGTTCTCTCTCCCTGTTTCTACGGCCGTCGTTGCTTTCTCTCTTCTATTTTCCGTATTTTCTCTCATCTTTAAGCATTAA

Protein sequence

MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFSLIFKH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo00782	Spo00782	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo00782.1	Spo00782.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00782.1.exon.1	Spo00782.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00782.1.CDS.1	Spo00782.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo00782.1 vs. NCBI nr
Match: gi|902189520|gb|KNA11392.1| (hypothetical protein SOVF_135650 [Spinacia oleracea])

HSP 1 Score: 114.4 bits (285), Expect = 7.500e-23
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS
Sbjct: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864280|gb|KMT15400.1| (hypothetical protein BVRB_3g061040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 103.6 bits (257), Expect = 1.300e-19
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ N+FTFFVAAILAIVA+VNAQEM PSPAPAAGAGFSLPVSTAVVAFS+LFSVFS
Sbjct: 1  MAKSINNNAFTFFVAAILAIVAAVNAQEMPPSPAPAAGAGFSLPVSTAVVAFSVLFSVFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864283|gb|KMT15403.1| (hypothetical protein BVRB_3g061070 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 101.3 bits (251), Expect = 6.600e-19
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ NSFTFFVAAILAIVA+VNAQEM PSPAPAAGAGFSLP+ST VVAFSL+FS FS
Sbjct: 1  MAKSINNNSFTFFVAAILAIVAAVNAQEMPPSPAPAAGAGFSLPISTTVVAFSLIFSFFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864281|gb|KMT15401.1| (hypothetical protein BVRB_3g061050 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.7 bits (234), Expect = 6.200e-17
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ NSFTFFVAAILAIVA+VNAQEM P+ AP AGAGFSLPVSTAVVAFS+LFS+FS
Sbjct: 1  MAKSIN-NSFTFFVAAILAIVAAVNAQEMPPTQAPDAGAGFSLPVSTAVVAFSVLFSIFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 64

[Close]

BLAST of Spo00782.1 vs. NCBI nr
Match: gi|870864282|gb|KMT15402.1| (hypothetical protein BVRB_3g061060 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.4 bits (233), Expect = 8.100e-17
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ NSFTFFVAAILAI+A+VNAQEM PS AP  GAGFSLPVST VVAFS+ FSVFS
Sbjct: 1  MAKSINNNSFTFFVAAILAIIAAVNAQEMPPSQAPDVGAGFSLPVSTVVVAFSVFFSVFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVT2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135650 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.200e-23
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS
Sbjct: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNR9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061040 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 9.300e-20
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ N+FTFFVAAILAIVA+VNAQEM PSPAPAAGAGFSLPVSTAVVAFS+LFSVFS
Sbjct: 1  MAKSINNNAFTFFVAAILAIVAAVNAQEMPPSPAPAAGAGFSLPVSTAVVAFSVLFSVFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTV9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061070 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.600e-19
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ NSFTFFVAAILAIVA+VNAQEM PSPAPAAGAGFSLP+ST VVAFSL+FS FS
Sbjct: 1  MAKSINNNSFTFFVAAILAIVAAVNAQEMPPSPAPAAGAGFSLPISTTVVAFSLIFSFFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

[Close]

BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FHL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061050 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.300e-17
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ NSFTFFVAAILAIVA+VNAQEM P+ AP AGAGFSLPVSTAVVAFS+LFS+FS
Sbjct: 1  MAKSIN-NSFTFFVAAILAIVAAVNAQEMPPTQAPDAGAGFSLPVSTAVVAFSVLFSIFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 64

[Close]

BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPE7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061060 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.600e-17
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1


		  
Query: 1  MAKSMSINSFTFFVAAILAIVASVNAQEMAPSPAPAAGAGFSLPVSTAVVAFSLLFSVFS 60
          MAKS++ NSFTFFVAAILAI+A+VNAQEM PS AP  GAGFSLPVST VVAFS+ FSVFS
Sbjct: 1  MAKSINNNSFTFFVAAILAIIAAVNAQEMPPSQAPDVGAGFSLPVSTVVVAFSVFFSVFS 60

Query: 61 LIFKH 66
          LIFKH
Sbjct: 61 LIFKH 65

The following BLAST results are available for this feature:

BLAST of Spo00782.1 vs. NCBI nr
BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
BLAST of Spo00782.1 vs. ExPASy Swiss-Prot
BLAST of Spo00782.1 vs. TAIR (Arabidopsis)

BLAST of Spo00782.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902189520\|gb\|KNA11392.1\|	7.5e-23	100.	hypothetical protein SOVF_1356...	[more]
gi\|870864280\|gb\|KMT15400.1\|	1.3e-19	89.2	hypothetical protein BVRB_3g06...	[more]
gi\|870864283\|gb\|KMT15403.1\|	6.6e-19	86.1	hypothetical protein BVRB_3g06...	[more]
gi\|870864281\|gb\|KMT15401.1\|	6.2e-17	84.6	hypothetical protein BVRB_3g06...	[more]
gi\|870864282\|gb\|KMT15402.1\|	8.1e-17	81.5	hypothetical protein BVRB_3g06...	[more]

BLAST of Spo00782.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVT2_SPIOL	5.2e-23	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CNR9_BETVU	9.3e-20	89.2	Uncharacterized protein OS=Bet...	[more]
A0A0J8CTV9_BETVU	4.6e-19	86.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8FHL9_BETVU	4.3e-17	84.6	Uncharacterized protein OS=Bet...	[more]
A0A0J8CPE7_BETVU	5.6e-17	81.5	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo00782.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo00782.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659	FAMILY NOT NAMED	coord: 1..65 score: 1.7