Spo00860.1 (mRNA) | SpinachBase

Overview


Name	Spo00860.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ribosomal protein S19
Location	chr3 : 45050340 .. 45054336 (+)
Sequence length	719

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGAGCTGAGACCAAGCTTAGGTAAGCTTGGCTCGAACTGACGTTTCTTTTTGTTTTTTCCACGTTGAAATTATTTCATTTATGGCAAATAATTCTACCCAAAATAACCTCATCCTAAAATTCTAATTCCAACTCTATGTCTTATCTCAAACTCTTATTTAATTAATCAGTGCAAGACTCTTATTTTCTTAATTCCCTTTCCTATTTCAGACAGGGAGAACATTAAAGAACGGAAAAATATCATGTCCATTTGTGACATTGTAATCTAATCAAGGTCACCTCGACAATTTCTTCTAGCTTTTGGCTGGACTGAATTTCTTAAACATGTTGGTGTATAGTTCTTAAACAGAAGATGGCTTCCTAGGAAAGCAGCTGTTACTGAAAAACATTATATTTCTGATGCTTTAGTTCAAAGCTATAGCTAGATAAGATCCTGTTTTTCTTATACCACTTCAACCAAATCCAAGTATGTTTCTTTTTCGTATAGATTATCCTTTCTTCTTTTCTATCGTACCGGGTTTATAAAATATAAATGTATGAACCACAGTAGGGATGACATGTGGGTGCAAATTTGTGCATACCACACTGCACCCGCACCAGTTGAGACGGGGATGGATACAACTTTGACGGATAGTAGGCGGATAGTGAGTAGGTGATGGGATTTAAGCTCATACCCTCTCCACATCCGCCTACCGACTCCGCGTCCTACCCGCCCGCCCGTCATTATACCCGTATGCTTTGTTTTTATTTTACAACTTTTTAATACTATACTACAGGTCATATTAATATTAGGCCCATTTAGAATTAAAACCCTATTTTCTTATTTAGTCTTCACTCCCTTTTTATCTCTCCTAATTTAGCTGTGCTTTCTCCGACTCCTTCCGTCGAGGTTCATCTTCCGTCGTCCTTGGTGCCGGTGCACCTCCTCCTCTCCCTCATCTCTCACTTTGTACCTCAAGGTCAGTTTTACCAATTCTTTACTTTCTATTTAATTGTAATTTCTGCCAAATCTGTTAATTTGAGTGTCGGTCTTTGAGTCATTGAGACCCATTAATTTGCTTAAATGAATCGCAAAAAAAAAAAATCAATTGTACAACTTGCCAATTTGCTTCAATCGCTAGCTAGTACGGAGTACTAAATTGATAAATTGATTACTTAACTTGTAAATTTATTATGCATTGAAAGTCCATGTGGGTTTTATCCAATGTTGTTTGCCACTTGCGAGCTCATCTATTGATTTTGGGAAGCTTGTAAACTTTAATGGGGTTTCTGATTTTACTCGAAAAATGAGGTCATCGAGTATTCATCATTGATAATTCTTTAATTCTTCCATCAATTATAAGCATAATATTTTATAAATAACTTGTTGGTCGGTGATTAAATTTGTTGAAAAAGCTATTAAGATTAACAATAAAATAAAGCATGAACATAAATTTTGATATGTTCACAGCCGCATCAAATCGAATAAGCTAAAAGAGAGGATCTTGTTTGATAATTTATTCCTGTTCCGTATTTGAAAGGGAGAATTTACATATTATTGCTTATCTTTTGATAATTCTTCACCAATTTTTGATGTTTGGGGGTAATGTTAGATGTAGGAAGATAAAGTACTTAATACATCCAACTAATTTTAGATGGCTGGGGTGATGTTACATGCAGGGAACGCAATACTGAATGATTGCTTGAATTTAGTTGGGTTTTAGCTTTAGCTTAAAATTTTCAGGCTTCAATTTATTTTGGGACTTTATCTTGTCGGGAATTTAACTCATACCATAAGTTGAGTTGATAGTCACATGAAACTATCATTCAAATTAATATGCAAGACCTAATTAACCACCAAGATTCGCCCCTAAAACCACAACAAAAATGTTCAAATGCAACAATAACATCCAATTTTCAACAAAATCAAGTAGACCTTTGTTAATTAAATCAAACCCAGAATTTGAAAGACCTAATTAACCACCAAGATTCTCCCCCAAAACCACAACAAAAATGTTCAAATGTAACAAAAACATCCAATTTTCAATAAAATCAAGTAGAGCTAATTGATTAAATGGAACACACAATTTTCCCCCAAATGATCGACAAATTCCCTCCATCTATTGGCGGAGCCAGGATTTTTTATTTGGGGTGTCGACATTATAACTACATGCTGAAAATGTTTTATAAAATATTTATTTGACACATTTCATAAACTTTATTCACGAGTTATGACACATTAATCAACAATCCTCTTAAATTAACAGTACGAGGACTAAATCAACTTATTAAATAAAGTTTTGCATTGATAATTTGATATTTGACAAGTATCATTTATGTGTGAGATCCATTCAACTCTTAAGATTATTATACAAGTACAAGTTCCTCCTTAATCCTTATACCTTAAGTACTGCGTTGTTAATGTGTAGTCCTTCCACCTCAAATTGATCGTCAATTTCTATTTAGGATGTCAGAGACAATTGTGCTCCTACAATTTGCTCTTGAATTTACTCTTAGCTTGCTCTTGCCTCTGATCTTTCCCAACTACTTGTGAGAATGTGCACTAAAACAGAGTAAGACTGCTATCGTGTTTCTTGTTATAAAGCACCCACATATGTCAGGGAGCCAGAGAGGTGAATTCTCAGGTCCTTGTGGCCGTTGTCATCCATAATCAGTCCTATAATGAGATGTGCTGATTAATTTTGAGTTGTGACTTTGAAGCTTGAGCTTCCTTTTTTAAAGATCAAAAGGTTTATGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGCAATGACTTGGTTTTGAGGTCGTTGTCTTTTCTCATGCGTGATTTATCTGATGATAATTAGGTTTTGACCATGGATCTATGTGGTGTTTGATTTAGTTGACCTTTTATTATTTCTTAATGGCTGCAATTTAGATTATATCACTTACATTGTTATCAGAGTGACAATCCCAGAATCATGCCTCGTCGAGCATTATGGAAAGGTCCTTTTGTTGATGCATTCTTGTTGAGACTGAAAGAGAACAAAGAACAGCTTGCAAACAAAAAGATATGGTCAAGGAGGTCTTCTATTCTTCCAGAATTTGTTGGTACCGTTGTTCGAATTTACAATGGAAAGTCTTTCGTTCGCTGTAAGATAAATGAAGCTAAAGTTGGTCATAAATTTGGAGAGTTTGCTTTCACGCGGAAAAGAAAGCCTCACAAAACAGATACTGGCAAGAAAAAGGGTGGTCGTTGAGCAAACTAGTGGTAGTGGCTGCCTCCCTCCATTTGCTGTGCTTCTATATTCCATGCACACAGAGGATTCTTACCTCGTGTTTTTCATCTTGTTGAACTAGCTTTTATGCCATTCCTAGTAACATTGTATTTCGTTGGGAAATTTATGAAAACCCTTGTAACTTTGTAAGCCCCTTTATGGAACTCGAATTGTTTTTGTTCCTCAACAATGTTTTCCAGCTAAAACAACCATTTTAGTCAATTAATTGCCTCATTTCAGTTAAAGAGAATAAGAAATGGGAAGAGCATACATTTTTGGTACTTGTACATCCC

mRNA sequence

ATGAGCCGAGCTGAGACCAAGCTTAGCTGTGCTTTCTCCGACTCCTTCCGTCGAGGTTCATCTTCCGTCGTCCTTGGTGCCGGTGCACCTCCTCCTCTCCCTCATCTCTCACTTTGTACCTCAAGAATCATGCCTCGTCGAGCATTATGGAAAGGTCCTTTTGTTGATGCATTCTTGTTGAGACTGAAAGAGAACAAAGAACAGCTTGCAAACAAAAAGATATGGTCAAGGAGGTCTTCTATTCTTCCAGAATTTGTTGGTACCGTTGTTCGAATTTACAATGGAAAGTCTTTCGTTCGCTGTAAGATAAATGAAGCTAAAGTTGGTCATAAATTTGGAGAGTTTGCTTTCACGCGGAAAAGAAAGCCTCACAAAACAGATACTGGCAAGAAAAAGGGTGGTCGTTGAGCAAACTAGTGGTAGTGGCTGCCTCCCTCCATTTGCTGTGCTTCTATATTCCATGCACACAGAGGATTCTTACCTCGTGTTTTTCATCTTGTTGAACTAGCTTTTATGCCATTCCTAGTAACATTGTATTTCGTTGGGAAATTTATGAAAACCCTTGTAACTTTGTAAGCCCCTTTATGGAACTCGAATTGTTTTTGTTCCTCAACAATGTTTTCCAGCTAAAACAACCATTTTAGTCAATTAATTGCCTCATTTCAGTTAAAGAGAATAAGAAATGGGAAGAGCATACATTTTTGGTACTTGTACATCCC

Coding sequence (CDS)

ATGAGCCGAGCTGAGACCAAGCTTAGCTGTGCTTTCTCCGACTCCTTCCGTCGAGGTTCATCTTCCGTCGTCCTTGGTGCCGGTGCACCTCCTCCTCTCCCTCATCTCTCACTTTGTACCTCAAGAATCATGCCTCGTCGAGCATTATGGAAAGGTCCTTTTGTTGATGCATTCTTGTTGAGACTGAAAGAGAACAAAGAACAGCTTGCAAACAAAAAGATATGGTCAAGGAGGTCTTCTATTCTTCCAGAATTTGTTGGTACCGTTGTTCGAATTTACAATGGAAAGTCTTTCGTTCGCTGTAAGATAAATGAAGCTAAAGTTGGTCATAAATTTGGAGAGTTTGCTTTCACGCGGAAAAGAAAGCCTCACAAAACAGATACTGGCAAGAAAAAGGGTGGTCGTTGA

Protein sequence

MSRAETKLSCAFSDSFRRGSSSVVLGAGAPPPLPHLSLCTSRIMPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo00860	Spo00860	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo00860.1	Spo00860.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00860.1.exon.1	Spo00860.1.exon.1	exon
Spo00860.1.exon.2	Spo00860.1.exon.2	exon
Spo00860.1.exon.3	Spo00860.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00860.1.CDS.1	Spo00860.1.CDS.1	CDS
Spo00860.1.CDS.2	Spo00860.1.CDS.2	CDS
Spo00860.1.CDS.3	Spo00860.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00860.1.utr3p.1	Spo00860.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo00860.1 vs. NCBI nr
Match: gi|902154914|gb|KNA05857.1| (hypothetical protein SOVF_186490 [Spinacia oleracea])

HSP 1 Score: 190.7 bits (483), Expect = 1.700e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI
Sbjct: 1   MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR
Sbjct: 61  NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 92

[Close]

BLAST of Spo00860.1 vs. NCBI nr
Match: gi|469402881|dbj|BAN04690.1| (ribosomal protein S19 [Beta vulgaris])

HSP 1 Score: 170.6 bits (431), Expect = 1.800e-39
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M RR+LWKG FVDAFLLRLKENKEQLANKKIWSRRSSILPEFVG+ VRIYNGKSFVRCKI
Sbjct: 1   MSRRSLWKGSFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGSAVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
            E+KVGHKFGEFAFTRKR+PHK D GKKKGGR
Sbjct: 61  TESKVGHKFGEFAFTRKRRPHKLDGGKKKGGR 92

[Close]

BLAST of Spo00860.1 vs. NCBI nr
Match: gi|514724809|ref|XP_004955585.1| (PREDICTED: ribosomal protein S19, mitochondrial [Setaria italica])

HSP 1 Score: 141.4 bits (355), Expect = 1.200e-30
Identity = 75/138 (54.35%), Postives = 89/138 (64.49%), Query Frame = 1

		  
Query: 8   LSCAFSDSFRRGSSSVVLGAGAPPPLPHLSLCTS----------RIMPRRALWKGPFVDA 67
           +S   +  F R S ++   A A    P      S          R    RALWKG FVDA
Sbjct: 3   ISSLIASRFARSSHALPAAAAAISQAPRAQHTASPLLSGLGAAARAFSSRALWKGAFVDA 62

Query: 68  FLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEAKVGHKFGEFAF 127
           FL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGK+ VRCKI E KVGHKFGEFAF
Sbjct: 63  FLARIKKNRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAF 122

Query: 128 TRKRKPHKTDTGKKKGGR 136
           TR+R+PH+T TGK K G+
Sbjct: 123 TRRRRPHRTITGKGKQGK 140

[Close]

BLAST of Spo00860.1 vs. NCBI nr
Match: gi|226528256|ref|NP_001143727.1| (uncharacterized protein LOC100276475 [Zea mays])

HSP 1 Score: 140.6 bits (353), Expect = 2.000e-30
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1

		  
Query: 41  SRIMPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVR 100
           +R    RALWKG FVDAFL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGKS VR
Sbjct: 47  ARDFSSRALWKGAFVDAFLARIKKNRENMNGKKIWSRRSSILPEFVGSTVLIYNGKSHVR 106

Query: 101 CKINEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           CKI E KVGHKFGEFAFTR+R+PH+T TGK   G+
Sbjct: 107 CKITEGKVGHKFGEFAFTRRRRPHRTITGKGNQGK 141

[Close]

BLAST of Spo00860.1 vs. NCBI nr
Match: gi|316996013|dbj|BAD83473.2| (ribosomal protein S19 (mitochondrion) [Nicotiana tabacum])

HSP 1 Score: 140.6 bits (353), Expect = 2.000e-30
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRR++WKG FVDAFLLR+K+ ++ L N+KIWSRRSSILPEFV   VRIYNGK+FVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLFNRKIWSRRSSILPEFVDCSVRIYNGKTFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTD--TGKKKG 134
            E KVGHKFGEFAFTRKR+P +T+   G+KKG
Sbjct: 61  TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKKG 92

[Close]

BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QF05_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186490 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.200e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI
Sbjct: 1   MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR
Sbjct: 61  NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 92

[Close]

BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BS99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193640 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.300e-39
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M RR+LWKG FVDAFLLRLKENKEQLANKKIWSRRSSILPEFVG+ VRIYNGKSFVRCKI
Sbjct: 1   MSRRSLWKGSFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGSAVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
            E+KVGHKFGEFAFTRKR+PHK D GKKKGGR
Sbjct: 61  TESKVGHKFGEFAFTRKRRPHKLDGGKKKGGR 92

[Close]

BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: M5AUG4_BETVU (Ribosomal protein S19 OS=Beta vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.300e-39
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M RR+LWKG FVDAFLLRLKENKEQLANKKIWSRRSSILPEFVG+ VRIYNGKSFVRCKI
Sbjct: 1   MSRRSLWKGSFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGSAVRIYNGKSFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
            E+KVGHKFGEFAFTRKR+PHK D GKKKGGR
Sbjct: 61  TESKVGHKFGEFAFTRKRRPHKLDGGKKKGGR 92

[Close]

BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: K4A177_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_032619mg PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.300e-31
Identity = 75/138 (54.35%), Postives = 89/138 (64.49%), Query Frame = 1

		  
Query: 8   LSCAFSDSFRRGSSSVVLGAGAPPPLPHLSLCTS----------RIMPRRALWKGPFVDA 67
           +S   +  F R S ++   A A    P      S          R    RALWKG FVDA
Sbjct: 3   ISSLIASRFARSSHALPAAAAAISQAPRAQHTASPLLSGLGAAARAFSSRALWKGAFVDA 62

Query: 68  FLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEAKVGHKFGEFAF 127
           FL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGK+ VRCKI E KVGHKFGEFAF
Sbjct: 63  FLARIKKNRENMNGKKIWSRRSSILPEFVGSSVLIYNGKTHVRCKITEGKVGHKFGEFAF 122

Query: 128 TRKRKPHKTDTGKKKGGR 136
           TR+R+PH+T TGK K G+
Sbjct: 123 TRRRRPHRTITGKGKQGK 140

[Close]

BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Match: B6TC74_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.400e-30
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 1

		  
Query: 41  SRIMPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVR 100
           +R    RALWKG FVDAFL R+K+N+E +  KKIWSRRSSILPEFVG+ V IYNGKS VR
Sbjct: 47  ARDFSSRALWKGAFVDAFLARIKKNRENMNGKKIWSRRSSILPEFVGSTVLIYNGKSHVR 106

Query: 101 CKINEAKVGHKFGEFAFTRKRKPHKTDTGKKKGGR 136
           CKI E KVGHKFGEFAFTR+R+PH+T TGK   G+
Sbjct: 107 CKITEGKVGHKFGEFAFTRRRRPHRTITGKGNQGK 141

[Close]

BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_PETHY (Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 2.800e-32
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           MPRR++WKG FVDAFLLR+K+ ++ L N+KIWSRRSSILPEFV   VRIYNGK+FVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 104 NEAKVGHKFGEFAFTRKRKPHKTD--TGKKKG 134
            E KVGHKFGEFAFTRKR+P +T+   G+K+G
Sbjct: 61  TEGKVGHKFGEFAFTRKRRPSRTNIGPGRKRG 92

[Close]

BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 2.800e-24
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M  R++WK PFVDAFL++    K    N+KIWSRRS+ILPE+V + VRIYNGK+ VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK---KKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 104 NEAKVGHKFGEFAFTRKRKPH 125
            E KVGHKFGEFAFTRK K H
Sbjct: 191 TEGKVGHKFGEFAFTRKVKKH 208

[Close]

BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_TETSU (Ribosomal protein S19, mitochondrial OS=Tetraselmis subcordiformis GN=RPS19 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.300e-18
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 1

		  
Query: 47  RALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEA 106
           RA+WKGPF+D F  R  +N    +N KI+SRRS + P+F+G  V IYNG  ++  KI E 
Sbjct: 3   RAIWKGPFIDPFFFR--KNGSSNSNNKIYSRRSVVSPKFIGREVEIYNGHKWITIKIKED 62

Query: 107 KVGHKFGEFAFTRKRKPHKTDT 129
            +GHKFGEFAFTRK   HK  T
Sbjct: 63  MIGHKFGEFAFTRKATIHKKKT 82

[Close]

BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RT19_MARPO (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha GN=RPS19 PE=3 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.400e-17
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1

		  
Query: 47  RALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKINEA 106
           R++WKGPFVD  L      K++    +IWSRRS ILP+FVG   +IYNGK FV  KI E 
Sbjct: 3   RSIWKGPFVDTCLF-----KQKKIRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 107 KVGHKFGEFAFTRK 121
            VGHKFGEFA TRK
Sbjct: 63  MVGHKFGEFASTRK 71

[Close]

BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Match: RS19_SPHWW (30S ribosomal protein S19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsS PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.700e-16
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1

		  
Query: 47  RALWKGPFVDAFLLRLKENKEQLANK---KIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 106
           R++WKGPFVD  LLR  E  +    +   K WSRRS+ILP+FVG    +YNG+ FV   +
Sbjct: 3   RSIWKGPFVDLHLLRKAEGAQDSGARAPIKTWSRRSTILPQFVGLTFNVYNGRKFVPVSV 62

Query: 107 NEAKVGHKFGEFAFTRKRKPHKTDTGKK 132
           +E  VGHK GEFA TR    H    GK+
Sbjct: 63  SEEMVGHKLGEFAPTRYFPGHADKKGKR 90

[Close]

BLAST of Spo00860.1 vs. TAIR (Arabidopsis)
Match: AT5G47320.1 (ribosomal protein S19)

HSP 1 Score: 112.8 bits (281), Expect = 1.600e-25
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1

		  
Query: 44  MPRRALWKGPFVDAFLLRLKENKEQLANKKIWSRRSSILPEFVGTVVRIYNGKSFVRCKI 103
           M  R++WK PFVDAFL++    K    N+KIWSRRS+ILPE+V + VRIYNGK+ VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMK---KKNAALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 104 NEAKVGHKFGEFAFTRKRKPH 125
            E KVGHKFGEFAFTRK K H
Sbjct: 191 TEGKVGHKFGEFAFTRKVKKH 208

The following BLAST results are available for this feature:

BLAST of Spo00860.1 vs. NCBI nr
BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
BLAST of Spo00860.1 vs. TAIR (Arabidopsis)

BLAST of Spo00860.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902154914\|gb\|KNA05857.1\|	1.7e-45	100.	hypothetical protein SOVF_1864...	[more]
gi\|469402881\|dbj\|BAN04690.1\|	1.8e-39	89.1	ribosomal protein S19 [Beta vu...	[more]
gi\|514724809\|ref\|XP_004955585.1\|	1.2e-30	54.3	PREDICTED: ribosomal protein S...	[more]
gi\|226528256\|ref\|NP_001143727.1\|	2.0e-30	70.5	uncharacterized protein LOC100...	[more]
gi\|316996013\|dbj\|BAD83473.2\|	2.0e-30	72.8	ribosomal protein S19 (mitocho...	[more]

BLAST of Spo00860.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QF05_SPIOL	1.2e-45	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BS99_BETVU	1.3e-39	89.1	Uncharacterized protein OS=Bet...	[more]
M5AUG4_BETVU	1.3e-39	89.1	Ribosomal protein S19 OS=Beta ...	[more]
K4A177_SETIT	8.3e-31	54.3	Uncharacterized protein OS=Set...	[more]
B6TC74_MAIZE	1.4e-30	70.5	Putative uncharacterized prote...	[more]

BLAST of Spo00860.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RT19_PETHY	2.8e-32	71.7	Ribosomal protein S19, mitocho...	[more]
RT19_ARATH	2.8e-24	66.6	40S ribosomal protein S19, mit...	[more]
RT19_TETSU	2.3e-18	53.6	Ribosomal protein S19, mitocho...	[more]
RT19_MARPO	3.4e-17	59.4	Ribosomal protein S19, mitocho...	[more]
RS19_SPHWW	3.7e-16	48.8	30S ribosomal protein S19 OS=S...	[more]

BLAST of Spo00860.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G47320.1	1.6e-25	66.6	ribosomal protein S19	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 106..121 score: 1.8E-14coord: 94..106 score: 1.8E-14coord: 74..93 score: 1.8
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 45..130 score:
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 44..135 score: 2.5
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 47..124 score: 1.3
IPR005732	Ribosomal protein S19, bacterial-type	TIGRFAMs	TIGR01050	TIGR01050	coord: 47..130 score: 7.4
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 94..118 scor
IPR023575	Ribosomal protein S19, superfamily	GENE3D	3.30.860.10		coord: 46..131 score: 1.5
IPR023575	Ribosomal protein S19, superfamily	unknown	SSF54570	Ribosomal protein S19	coord: 46..125 score: 1.05
None	No IPR available	PANTHER	PTHR11880:SF8	37S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL	coord: 44..135 score: 2.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding