Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGTGTTTTCTTTTGTCATTATTTATCCAGGACTATGGATTTCGTTTCATATGATATATAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGGTATCATCAATATTTCTTCATCTTTACATCATCAAGTGATTTCTAAGTTGTTAATCTGATTTTATTTAAGTATTAAATTAGAGTAATGTGTGTTGCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGATGAAGATAATATGTAAAATATTTATGGAGCTTGAGTAAGGGGGGGCTTGATATGGGACTTTTCAACATGACAAAGAAGAAGATCGAAACTATTTATGAAGGTGATGACGTACGTTCTATTTTCTGCACTGCCTTGTGGTTTATGCCTATGTTTTAGTGGGTTATTATTTTCATTTTTTATTAAGTATTGTATCATCAAATGTAACTTTAATAATTTGCTTAATGTTGATGGGCTAAGTTTGTTTTTTCTGCGTGTATCATTAATACTTTTGTGCCCCTTCAATAATTCTCTTTATTATATTTTTTTGGTTTGAAGCAATGTAGGCACGGAATATGATTAAGACTTTTTGTGTAACTTATTCAAATAAGATCCATTTTTCTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTTACATGCCTTATCTTGTTAGAGCATCCATAAATTATGTTCATGTTATCATGTATATACGAAATTACGAGTATGTACGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTGTCTCCACTGCAATATAATTGTATAATCTGCAATGGAATGACAATATAAGCTCCTAAATGAAAAGAAACCAAGCAAACAAAAGACCTTGAATCTTTGGTTGAACGAAAGAATGTTATATCAACATTGATATCAAGAAAACTGGACAACTCATTTTTACTTTGTTAGCATATTCAATCCTTGTCATTCATTAAGGTAAATGTTGTTGTTATCTGACAACTTGTTACGCCATTGGTTGAAAATCGAATTCAATTTGTTACTAAGATATATCATACATGACCTTATATGACTTTTGGACACTTAGAAGGTTCGAACTACCTTGATTTGCTCTTATGAAGGTTTGCATTTGCTTATATAGTGGAGCAACTTTTGATATCTCTTGCATTTGTTCAAATGACATGGTTCTGTCTTTTTATCACTTCTGTCATACTTGCTTCTTTACTTTATCATCTATGTATATATTGGTTAGATCGTTGAAGAAAGTAATAGGCCCGTTAGCATGGTTGTTGACCAAAATTAAGGGGTTGTGTGTTTCGTGGGTTGTTCTTTGTTGATAAAATAATATGTCATGTTTTGAAAACATATCATATTAATTTTGCTGTTTCTGAGATGGGAAGAATTGTCAGTTGGCCTGTGGCACTAGGTTCTGGTAGATTGCCTTCTATGATATAATTTAGGAGCTATTGTGCAGCCTGTGAAAATCTGGTGCAAGATCATGCGCTAATACCTGTTGTGTTGTTCTTAAAACTATAATGTATGCAATATATTGTCTGCATCACTGTTGACAACCTATTAGTTCATATTTGTATATTTGCATTTTCTCTTTACTGGTTTGGTTATTTTTGCTTGAAAGAATCAAATATAAAAATTGAACTAATGAGAGTGATATAATTATAAGGAGGCAATGTGACTAGAATTAATGAGGCTAAGAATTATATCTCTTGATGTCTTTGAACTTCAGATTATTGAGCAGACTATGAATTGCATGCATTGCTATTATTGATGTCTGATTTTATAGTCGTTTTGGACTCCTGTCCTGATGACCGTCTTTTAGTTTATTTACTTTGTAAAACCTAGGAGTGTATGTGGCATAGATGTTCAGGAGTAAAAATTATCTAACTGTAAGGCATGACCTAAGACAATCAGTTTGGGACAGGCAATAAAGAGATTGAAGAGAGATGATACGCATACAATGGGTGTATGTGTTGGACCACATACAAAACAATCTCAGCCGTTAGATTTAGATCTGTCCAAAATTTTAGGCGGGGAAAAAGGGTGATAGAAGGCGGTAAAATTTTGGGATTTTCCCGGGTAATAGAAGAACGCAGCGGGAAGTTTTGGCATGGGCGCCAAACTTCTGCATAGAAAAATTGGAAGCGTGTTAATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCTGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATGCGTCGGAGGTTAAGGGGGGGCATGATATGGGACTTTTCAACATGACAAAAAAGAAG
mRNA sequence
ATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGATGAAGATAATATGTAAAATATTTATGGAGCTTGAGTAAGGGGGGGCTTGATATGGGACTTTTCAACATGACAAAGAAGAAGATCGAAACTATTTATGAAGGTGATGACGTACGTTCTATTTTCTGCACTGCCTTGTGGTTTATGCCTATGTTTTAGTGGGTTATTATTTTCATTTTTTATTAAGTATTGTATCATCAAATGTAACTTTAATAATTTGCTTAATGTTGATGGGCTAAGTTTGTTTTTTCTGCGTGTATCATTAATACTTTTGTGCCCCTTCAATAATTCTCTTTATTATATTTTTTTGGTTTGAAGCAATGTAGGCACGGAATATGATTAAGACTTTTTGTGTAACTTATTCAAATAAGATCCATTTTTCTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTTACATGCCTTATCTTGTTAGAGCATCCATAAATTATGTTCATGTTATCATGTATATACGAAATTACGAGTATGTACGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTGTCTCCACTGCAATATAATTGTATAATCTGCAATGGAATGACAATATAAGCTCCTAAATGAAAAGAAACCAAGCAAACAAAAGACCTTGAATCTTTGGTTGAACGAAAGAATGTTATATCAACATTGATATCAAGAAAACTGGACAACTCATTTTTACTTTGTTAGCATATTCAATCCTTGTCATTCATTAAGGTAAATGTTGTTGTTATCTGACAACTTGTTACGCCATTGGTTGAAAATCGAATTCAATTTGTTACTAAGATATATCATACATGACCTTATATGACTTTTGGACACTTAGAAGGTTCGAACTACCTTGATTTGCTCTTATGAAGGTTTGCATTTGCTTATATAGTGGAGCAACTTTTGATATCTCTTGCATTTGTTCAAATGACATGGTTCTGTCTTTTTATCACTTCTGTCATACTTGCTTCTTTACTTTATCATCTATGTATATATTGGTTAGATCGTTGAAGAAAGTAATAGGCCCGTTAGCATGGTTGTTGACCAAAATTAAGGGGTTGTGTGTTTCGTGGGTTGTTCTTTGTTGATAAAATAATATGTCATGTTTTGAAAACATATCATATTAATTTTGCTGTTTCTGAGATGGGAAGAATTGTCAGTTGGCCTGTGGCACTAGGTTCTGGTAGATTGCCTTCTATGATATAATTTAGGAGCTATTGTGCAGCCTGTGAAAATCTGGTGCAAGATCATGCGCTAATACCTGTTGTGTTGTTCTTAAAACTATAATGTATGCAATATATTGTCTGCATCACTGTTGACAACCTATTAGTTCATATTTGTATATTTGCATTTTCTCTTTACTGGTTTGGTTATTTTTGCTTGAAAGAATCAAATATAAAAATTGAACTAATGAGAGTGATATAATTATAAGGAGGCAATGTGACTAGAATTAATGAGGCTAAGAATTATATCTCTTGATGTCTTTGAACTTCAGATTATTGAGCAGACTATGAATTGCATGCATTGCTATTATTGATGTCTGATTTTATAGTCGTTTTGGACTCCTGTCCTGATGACCGTCTTTTAGTTTATTTACTTTGTAAAACCTAGGAGTGTATGTGGCATAGATGTTCAGGAGTAAAAATTATCTAACTGTAAGGCATGACCTAAGACAATCAGTTTGGGACAGGCAATAAAGAGATTGAAGAGAGATGATACGCATACAATGGGTGTATGTGTTGGACCACATACAAAACAATCTCAGCCGTTAGATTTAGATCTGTCCAAAATTTTAGGCGGGGAAAAAGGGTGATAGAAGGCGGTAAAATTTTGGGATTTTCCCGGGTAATAGAAGAACGCAGCGGGAAGTTTTGGCATGGGCGCCAAACTTCTGCATAGAAAAATTGGAAGCGTGTTAATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCTGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATGCGTCGGAGGTTAAGGGGGGGCATGATATGGGACTTTTCAACATGACAAAAAAGAAG
Coding sequence (CDS)
ATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGA
Protein sequence
MLFSLFLLIVDEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSGIFSRLFFIMELD
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Spo00927 | Spo00927 | gene |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo00927.1 | Spo00927.1-protein | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo00927.1.exon.1 | Spo00927.1.exon.1 | exon |
| Spo00927.1.exon.2 | Spo00927.1.exon.2 | exon |
| Spo00927.1.exon.3 | Spo00927.1.exon.3 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo00927.1.CDS.1 | Spo00927.1.CDS.1 | CDS |
| Spo00927.1.CDS.2 | Spo00927.1.CDS.2 | CDS |
| Spo00927.1.CDS.3 | Spo00927.1.CDS.3 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo00927.1.utr3p.1 | Spo00927.1.utr3p.1 | three_prime_UTR |
Homology
BLAST of Spo00927.1 vs. NCBI nr
Match:
gi|902194110|gb|KNA12455.1| (hypothetical protein SOVF_125880 isoform A [Spinacia oleracea])
HSP 1 Score: 151.4 bits (381), Expect = 7.900e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 11 DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
D+ Y + +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238
Query: 71 GDVKKFFGSGIFSRLFFIMELD 93
GDVKKFFGSGIFSRLFFIMELD
Sbjct: 239 GDVKKFFGSGIFSRLFFIMELD 260
BLAST of Spo00927.1 vs. NCBI nr
Match:
gi|902194111|gb|KNA12456.1| (hypothetical protein SOVF_125860 isoform B [Spinacia oleracea])
HSP 1 Score: 126.7 bits (317), Expect = 2.100e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 11 DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
D+ Y + +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238
Query: 71 GDVKKFFGS 80
GDVKKFFGS
Sbjct: 239 GDVKKFFGS 247
BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9QYW7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125880 PE=4 SV=1)
HSP 1 Score: 151.4 bits (381), Expect = 5.500e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1
Query: 11 DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
D+ Y + +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238
Query: 71 GDVKKFFGSGIFSRLFFIMELD 93
GDVKKFFGSGIFSRLFFIMELD
Sbjct: 239 GDVKKFFGSGIFSRLFFIMELD 260
BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9R0X0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125860 PE=4 SV=1)
HSP 1 Score: 126.7 bits (317), Expect = 1.400e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1
Query: 11 DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
D+ Y + +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238
Query: 71 GDVKKFFGS 80
GDVKKFFGS
Sbjct: 239 GDVKKFFGS 247
BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9RL41_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_060360 PE=4 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 8.200e-6
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1
Query: 45 PNPTPEMKIIAACLLVALGGKACTTAGDVKK 76
PNPTPEMKI+AACLL ALGGKAC T D+KK
Sbjct: 14 PNPTPEMKIVAACLLSALGGKACPTVDDIKK 44
The following BLAST results are available for this feature:
BLAST of Spo00927.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
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BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
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BLAST of Spo00927.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of Spo00927.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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