Spo00968.1 (mRNA) | SpinachBase

Overview


Name	Spo00968.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S acidic ribosomal protein P3, putative
Location	SpoScf_03688 : 6901 .. 9145 (-)
Sequence length	927

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATTTGGGCTACACTTTGAAGGCCAACCTGATCTTACTCCATCAAAAAGAGTTTTGAATAGTGCGGAGATCTCCAATTCTAGGGTTTTTGGTAACAACCACATATAAACTCTCTTCACTAGATTCCTAAACTCCGAAAGCCGTACTTTGAAACTCTGAACTCTACTCTCTCCTTTTTCTATCTCCTAAATCCTTCGCAAACAATCGACAATGGGAGTATACACCTTTGTTTGCAAGAAATCCGGCGCCGAATGGTCTGCCAAGCAACACTCCGGCGACCTTGAAGCCTCCGCCGACTGCCCCTTTACTCTTCAGAGGAAGCTCGTCCAGTCCGCCCTTAACTCCGGCGATTCCGGCGCCATCCAGTCATCTTTCAATTACATCACCCCTTCTTCCGCCGTCTCTCAGGTATGGCCGGTTTAACTTATCATCATAATAATATCATCTTTGATTTAGCTTTTGTTTTTCTGGGTTGTTTTTTGTATGATTTGTTGTATGTTATGTCAATTGTATGGTAAGGAGATAATCGTATTCGATTTTTGTTGGTTGCAAATTTGAGACTTGTTTTATGATTTGTTTTTTGTTGAATTGAATTTAGGTTAGTATAATTGGTGTTTGGACTGACCCAATCTGATATGAGGTTGTATTATGCTTTGAATTTGAGTTTGTTTGATTTGAATCGAATGAAGTAATTCGAATTGAATAACTGAACTATTGAGCAATGATCGTCACCCATGTGAAACAAGTGGAGTATGATTTCAGTTTTAACCGAATGAACTGAAGTACTGAACAGTGAACACCGACCTTATGAAATTATGTCGAAGTCGCTTATGATGAGGCCTCAATTTATTCTGGGACTTTATCATGTCTTAATTCCAAAAGATGATTGATCGGAATTTAACCTGTACCGTTGCGGATTGATCTGAATATGATTGACTTATTTTAGAATATGTATAATGTATTAATGTAATTAACCTTATTTTTGTAATTGCGCTATTAGCTTTATATTAGCCCTAAATGCTTACTCCGTAATCCCTATGTGTAACTATTGAATGAGAAAGGCACGGCAAATACTTATCACAAAATAAACTAATTAGAACAGTTGTTAGGTTTGACCGTTTGAGTGTGTAACTATTGAATGAGAAAGGCACGGCAAATACTTATCACAAAATAAACTAATTAGAACAGTTGTTAGGTTTGACCGTTTGAGTGTGTAACTATTGAATGAGAAAGGCACGGCAAATACCTAGTCTTGTGATACCATGTGATAAATACATATTTTAACAGGAATTTAGTAGTGTATATTCAAACAGCCTATGAACTTGGTAGTTCGCTGGCTTCATTCTGTGGTTGAAAAGTAAACTACTCCGTAGTAGATATGCTTCTATATGTTTATTGGAGTTTCCCAGATTAGACGTTGGCTGATTAATATTGTGATTGATATTTAGGACATATGCATGTGAAGGTGGCTGATTCTGCTTTGCTAATTAAATGTCTTTATAAAATTGATAAATGCAGTTAATAAAAAAGATCTATGCAATGTAATCAGTATTCAACCCTGCTCTAAGTTGAGCCTTTCTCTTCTTGTTAAGCAAATTAAAGAATTTGTATGATGTAGTGAAACAATTTGTACCCTTTGACACTAAAGTGGAGCTTTTGTCATGCTTTTATTAAGATTTGTTTGGTGTTGTAATCTGATGTCCCCAATACCTTTTCTTTGTTTCAGGTGATCATTGGTGGAGCTGTTGCTGCCTCAATTGTTGGCGGTGGAGCAGGAGCTGCTGCAGCTCCCTCAGGTGGAGCAGCTGCCGCAGAGGCACCCAAGGAAGAGAAGAAGCCAGAGAAGGAAGAAAGTGAGGATGAGGACATGGGTTTTTCACTCTTTGACTAGAGTGTTATTACATGTAACATCTCTTTTTATGGCTTGTCAGTATGTTATCAAGTGTGTCGAATTACTAGAATTTTGTTAGATGTTCAGTATACTAGATGAACTTATTCGCTGAGATTTTTGTTTGGAGCTGCTGAATACAGTTCTTGCCATGTCTTTAATTGTATGGTCTAATTATTTGAATGATAATGCCATTTTTATGCCTTCGTCCCTGTAACAGTTGCACCGTGTTTTTGAACTTGAGATGTTAGGAAATAAGAGTTAAGCTAATAAATGGTGTCTAACCTTTTGAACTTTTCACCGTTTAGGACCTATACCTTTTTTTTCACCGTTTGGGACCTGATCCCCCTTTTCCG

mRNA sequence

TGAATTTGGGCTACACTTTGAAGGCCAACCTGATCTTACTCCATCAAAAAGAGTTTTGAATAGTGCGGAGATCTCCAATTCTAGGGTTTTTGGTAACAACCACATATAAACTCTCTTCACTAGATTCCTAAACTCCGAAAGCCGTACTTTGAAACTCTGAACTCTACTCTCTCCTTTTTCTATCTCCTAAATCCTTCGCAAACAATCGACAATGGGAGTATACACCTTTGTTTGCAAGAAATCCGGCGCCGAATGGTCTGCCAAGCAACACTCCGGCGACCTTGAAGCCTCCGCCGACTGCCCCTTTACTCTTCAGAGGAAGCTCGTCCAGTCCGCCCTTAACTCCGGCGATTCCGGCGCCATCCAGTCATCTTTCAATTACATCACCCCTTCTTCCGCCGTCTCTCAGGTGATCATTGGTGGAGCTGTTGCTGCCTCAATTGTTGGCGGTGGAGCAGGAGCTGCTGCAGCTCCCTCAGGTGGAGCAGCTGCCGCAGAGGCACCCAAGGAAGAGAAGAAGCCAGAGAAGGAAGAAAGTGAGGATGAGGACATGGGTTTTTCACTCTTTGACTAGAGTGTTATTACATGTAACATCTCTTTTTATGGCTTGTCAGTATGTTATCAAGTGTGTCGAATTACTAGAATTTTGTTAGATGTTCAGTATACTAGATGAACTTATTCGCTGAGATTTTTGTTTGGAGCTGCTGAATACAGTTCTTGCCATGTCTTTAATTGTATGGTCTAATTATTTGAATGATAATGCCATTTTTATGCCTTCGTCCCTGTAACAGTTGCACCGTGTTTTTGAACTTGAGATGTTAGGAAATAAGAGTTAAGCTAATAAATGGTGTCTAACCTTTTGAACTTTTCACCGTTTAGGACCTATACCTTTTTTTTCACCGTTTGGGACCTGATCCCCCTTTTCCG

Coding sequence (CDS)

ATGGGAGTATACACCTTTGTTTGCAAGAAATCCGGCGCCGAATGGTCTGCCAAGCAACACTCCGGCGACCTTGAAGCCTCCGCCGACTGCCCCTTTACTCTTCAGAGGAAGCTCGTCCAGTCCGCCCTTAACTCCGGCGATTCCGGCGCCATCCAGTCATCTTTCAATTACATCACCCCTTCTTCCGCCGTCTCTCAGGTGATCATTGGTGGAGCTGTTGCTGCCTCAATTGTTGGCGGTGGAGCAGGAGCTGCTGCAGCTCCCTCAGGTGGAGCAGCTGCCGCAGAGGCACCCAAGGAAGAGAAGAAGCCAGAGAAGGAAGAAAGTGAGGATGAGGACATGGGTTTTTCACTCTTTGACTAG

Protein sequence

MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITPSSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo00968	Spo00968	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo00968.1	Spo00968.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00968.1.utr5p.1	Spo00968.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00968.1.CDS.2	Spo00968.1.CDS.2	CDS
Spo00968.1.CDS.1	Spo00968.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00968.1.utr3p.1	Spo00968.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00968.1.exon.2	Spo00968.1.exon.2	exon
Spo00968.1.exon.1	Spo00968.1.exon.1	exon

Homology

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BLAST of Spo00968.1 vs. NCBI nr
Match: gi|902181805|gb|KNA09804.1| (hypothetical protein SOVF_150260 [Spinacia oleracea])

HSP 1 Score: 220.7 bits (561), Expect = 1.400e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP
Sbjct: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
           SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD
Sbjct: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120

[Close]

BLAST of Spo00968.1 vs. NCBI nr
Match: gi|698567626|ref|XP_009773828.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Nicotiana sylvestris])

HSP 1 Score: 156.8 bits (395), Expect = 2.400e-35
Identity = 88/121 (72.73%), Postives = 99/121 (81.82%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLVQ+AL++  SG +QSSF+Y+TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQLKGDLEASASCTYDLQRKLVQAALSTDSSGGVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAP-KEEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIGG      +GGGA AAAAPSGGAAAAE P  EEKK EKEES+D+DMGFSLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAAPSGGAAAAETPAAEEKKEEKEESDDDDMGFSLF 120

[Close]

BLAST of Spo00968.1 vs. NCBI nr
Match: gi|697148752|ref|XP_009628566.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Nicotiana tomentosiformis])

HSP 1 Score: 154.8 bits (390), Expect = 9.300e-35
Identity = 87/121 (71.90%), Postives = 99/121 (81.82%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLVQ+AL++  SG +QSSF+Y+TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQLKGDLEASASCTYDLQRKLVQAALSTDSSGGVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAP-KEEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIGG      +G GA AAAAPSGGAAAAEAP  EEKK EKEES+D+D+GFSLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGSGAAAAAAPSGGAAAAEAPAAEEKKEEKEESDDDDLGFSLF 120

[Close]

BLAST of Spo00968.1 vs. NCBI nr
Match: gi|747092607|ref|XP_011094078.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Sesamum indicum])

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-33
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SGAEWSAKQ +GDLEASAD  F LQRKLVQ+AL++  SGA+QSSF+Y+TP
Sbjct: 1   MGVFTFVCKGSGAEWSAKQLNGDLEASADSTFDLQRKLVQAALSADSSGAVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAV-AASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLF 120
           SSAV QVI+GGAV   + +GGGA AA A SGG AAAEAP  E+K E++E  D+DMGFSLF
Sbjct: 61  SSAVFQVIVGGAVGGGAFIGGGAAAAPAASGGGAAAEAPPAEEKKEEKEESDDDMGFSLF 120

[Close]

BLAST of Spo00968.1 vs. NCBI nr
Match: gi|976907616|gb|KVH94947.1| (hypothetical protein Ccrd_002991 [Cynara cardunculus var. scolymus])

HSP 1 Score: 146.0 bits (367), Expect = 4.300e-32
Identity = 81/120 (67.50%), Postives = 95/120 (79.17%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  G+LEASAD  +TLQRKLVQ AL+S  SG +QSSF+Y+ P
Sbjct: 1   MGVFTFVCKCSGGEWSAKQLKGELEASADSTYTLQRKLVQVALSSDSSGGVQSSFSYVLP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
            SAV QVIIGG    + +G GA AA+APSGGAAAAEAP  E+K E++E  D+DMGFSLFD
Sbjct: 61  DSAVFQVIIGGGGGGAAIGAGAAAASAPSGGAAAAEAPAAEEKKEEKEESDDDMGFSLFD 120

[Close]

BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR70_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150260 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.600e-55
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP
Sbjct: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
           SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD
Sbjct: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120

[Close]

BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: A0A118JWU7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_002991 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.000e-32
Identity = 81/120 (67.50%), Postives = 95/120 (79.17%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  G+LEASAD  +TLQRKLVQ AL+S  SG +QSSF+Y+ P
Sbjct: 1   MGVFTFVCKCSGGEWSAKQLKGELEASADSTYTLQRKLVQVALSSDSSGGVQSSFSYVLP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
            SAV QVIIGG    + +G GA AA+APSGGAAAAEAP  E+K E++E  D+DMGFSLFD
Sbjct: 61  DSAVFQVIIGGGGGGAAIGAGAAAASAPSGGAAAAEAPAAEEKKEEKEESDDDMGFSLFD 120

[Close]

BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: K4CC52_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-31
Identity = 83/120 (69.17%), Postives = 93/120 (77.50%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLV++AL S  SG +QSSF+++TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQLKGDLEASASCTYDLQRKLVKAALASDSSGGVQSSFSFVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
           SSAV QVIIGG      +GGGA AAA   GGAAA  AP EEKK EKEES D+DMGFSLFD
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAPSGGGAAAEAAPAEEKKEEKEES-DDDMGFSLFD 119

[Close]

BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: B9SNZ6_RICCO (60S acidic ribosomal protein P3, putative OS=Ricinus communis GN=RCOM_0440640 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.900e-31
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVC++S  EWSAKQ SGDLEASA  PF LQRKLV  A +S  SG +QSSF+Y+TP
Sbjct: 1   MGVYTFVCRQSDGEWSAKQLSGDLEASAAVPFELQRKLVNLAASSDSSGGVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGG-AAAAEAPKEEKKPEK-EESEDEDMGFSL 120
           SSAV QVIIGG      +GGGA AAAAP+GG AAAAEAP EEKK E+  E  D+DMGFSL
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAAPAGGAAAAAEAPAEEKKKEEPAEESDDDMGFSL 120

[Close]

BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H2T6_SOLCH (Putative 60S acidic ribosomal protein P3-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.500e-31
Identity = 87/121 (71.90%), Postives = 95/121 (78.51%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLVQ AL S  SG +QSSF+++TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQFKGDLEASASCTYDLQRKLVQVALASDSSGGVQSSFSFVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAE-APKEEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIGG       GGG  AAAAPSGGAAAAE AP EEKK EKEES D+D+GFSLF
Sbjct: 61  SSAVFQVIIGGGGG----GGGGAAAAAPSGGAAAAEAAPAEEKKEEKEES-DDDLGFSLF 116

[Close]

BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-28
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVC+ +G EW+AKQHSG++EASA  P+ LQR+LV +A  +     +QSSF+ +TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  SSAVSQVIIG--GAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSL 120
           SSAV QVI+G  G  A  + GGG G AAA   G AAAEAPKEEKK E++E  D+DMGFSL
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAA--SGGAAAEAPKEEKKEEEKEESDDDMGFSL 120

[Close]

BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.000e-26
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV++FVCK  G EW+AKQH GDLEASA   + LQRKLVQ+AL++  SG +QSSF+ ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLF 120
           +SAV  V+IGG        GG  AA    GG AAA   +EEKK E+ E E+ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 7.900e-26
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVC+ SG EW+AKQ  G+LEASA  P+ LQR+LV +A  +  +  +QSSF+ ++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPK-EEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIG     + +GGGA A AA   G AAAEAPK EEKK E++E  ++D+GFSLF
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAA--SGGAAAEAPKAEEKKEEEKEESEDDLGFSLF 119

[Close]

BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.400e-24
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK  G  WSAKQH G+LE+SA   + LQRKLVQ +L++  SG +QSSF+ ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGG---AGAAAAPSGGAA-AAEAPKE-EKKPEKEESEDEDMG 120
           +SAV QVI+GG       GGG   AG AA+  GGA  AA APKE EKK E+ E E+ D G
Sbjct: 61  TSAVFQVIVGGG------GGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEEEGDFG 118

[Close]

BLAST of Spo00968.1 vs. TAIR (Arabidopsis)
Match: AT5G57290.1 (60S acidic ribosomal protein family)

HSP 1 Score: 118.2 bits (295), Expect = 3.400e-27
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV++FVCK  G EW+AKQH GDLEASA   + LQRKLVQ+AL++  SG +QSSF+ ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLF 120
           +SAV  V+IGG        GG  AA    GG AAA   +EEKK E+ E E+ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of Spo00968.1 vs. TAIR (Arabidopsis)
Match: AT4G25890.1 (60S acidic ribosomal protein family)

HSP 1 Score: 111.3 bits (277), Expect = 4.100e-25
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 1

		  
Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK  G  WSAKQH G+LE+SA   + LQRKLVQ +L++  SG +QSSF+ ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGG---AGAAAAPSGGAA-AAEAPKE-EKKPEKEESEDEDMG 120
           +SAV QVI+GG       GGG   AG AA+  GGA  AA APKE EKK E+ E E+ D G
Sbjct: 61  TSAVFQVIVGGG------GGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEEEGDFG 118

The following BLAST results are available for this feature:

BLAST of Spo00968.1 vs. NCBI nr
BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
BLAST of Spo00968.1 vs. TAIR (Arabidopsis)

BLAST of Spo00968.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902181805\|gb\|KNA09804.1\|	1.4e-54	100.	hypothetical protein SOVF_1502...	[more]
gi\|698567626\|ref\|XP_009773828.1\|	2.4e-35	72.7	PREDICTED: 60S acidic ribosoma...	[more]
gi\|697148752\|ref\|XP_009628566.1\|	9.3e-35	71.9	PREDICTED: 60S acidic ribosoma...	[more]
gi\|747092607\|ref\|XP_011094078.1\|	1.7e-33	70.2	PREDICTED: 60S acidic ribosoma...	[more]
gi\|976907616\|gb\|KVH94947.1\|	4.3e-32	67.5	hypothetical protein Ccrd_0029...	[more]

BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QR70_SPIOL	9.6e-55	100.	Uncharacterized protein OS=Spi...	[more]
A0A118JWU7_CYNCS	3.0e-32	67.5	Uncharacterized protein OS=Cyn...	[more]
K4CC52_SOLLC	1.1e-31	69.1	Uncharacterized protein OS=Sol...	[more]
B9SNZ6_RICCO	1.9e-31	69.6	60S acidic ribosomal protein P...	[more]
A0A0V0H2T6_SOLCH	2.5e-31	71.9	Putative 60S acidic ribosomal ...	[more]

BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
RLA3_MAIZE	1.3e-28	60.6	60S acidic ribosomal protein P...	[more]
RLA32_ARATH	6.0e-26	54.6	60S acidic ribosomal protein P...	[more]
RLA3_ORYSJ	7.9e-26	57.8	60S acidic ribosomal protein P...	[more]
RLA31_ARATH	7.4e-24	56.4	60S acidic ribosomal protein P...	[more]

BLAST of Spo00968.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT5G57290.1	3.4e-27	54.6	60S acidic ribosomal protein f...	[more]
AT4G25890.1	4.1e-25	56.4	60S acidic ribosomal protein f...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 37..119 score: 2.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome