Spo00968.1 (mRNA)

Overview
NameSpo00968.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description60S acidic ribosomal protein P3, putative
LocationSpoScf_03688 : 6901 .. 9145 (-)
Sequence length927
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAATTTGGGCTACACTTTGAAGGCCAACCTGATCTTACTCCATCAAAAAGAGTTTTGAATAGTGCGGAGATCTCCAATTCTAGGGTTTTTGGTAACAACCACATATAAACTCTCTTCACTAGATTCCTAAACTCCGAAAGCCGTACTTTGAAACTCTGAACTCTACTCTCTCCTTTTTCTATCTCCTAAATCCTTCGCAAACAATCGACAATGGGAGTATACACCTTTGTTTGCAAGAAATCCGGCGCCGAATGGTCTGCCAAGCAACACTCCGGCGACCTTGAAGCCTCCGCCGACTGCCCCTTTACTCTTCAGAGGAAGCTCGTCCAGTCCGCCCTTAACTCCGGCGATTCCGGCGCCATCCAGTCATCTTTCAATTACATCACCCCTTCTTCCGCCGTCTCTCAGGTATGGCCGGTTTAACTTATCATCATAATAATATCATCTTTGATTTAGCTTTTGTTTTTCTGGGTTGTTTTTTGTATGATTTGTTGTATGTTATGTCAATTGTATGGTAAGGAGATAATCGTATTCGATTTTTGTTGGTTGCAAATTTGAGACTTGTTTTATGATTTGTTTTTTGTTGAATTGAATTTAGGTTAGTATAATTGGTGTTTGGACTGACCCAATCTGATATGAGGTTGTATTATGCTTTGAATTTGAGTTTGTTTGATTTGAATCGAATGAAGTAATTCGAATTGAATAACTGAACTATTGAGCAATGATCGTCACCCATGTGAAACAAGTGGAGTATGATTTCAGTTTTAACCGAATGAACTGAAGTACTGAACAGTGAACACCGACCTTATGAAATTATGTCGAAGTCGCTTATGATGAGGCCTCAATTTATTCTGGGACTTTATCATGTCTTAATTCCAAAAGATGATTGATCGGAATTTAACCTGTACCGTTGCGGATTGATCTGAATATGATTGACTTATTTTAGAATATGTATAATGTATTAATGTAATTAACCTTATTTTTGTAATTGCGCTATTAGCTTTATATTAGCCCTAAATGCTTACTCCGTAATCCCTATGTGTAACTATTGAATGAGAAAGGCACGGCAAATACTTATCACAAAATAAACTAATTAGAACAGTTGTTAGGTTTGACCGTTTGAGTGTGTAACTATTGAATGAGAAAGGCACGGCAAATACTTATCACAAAATAAACTAATTAGAACAGTTGTTAGGTTTGACCGTTTGAGTGTGTAACTATTGAATGAGAAAGGCACGGCAAATACCTAGTCTTGTGATACCATGTGATAAATACATATTTTAACAGGAATTTAGTAGTGTATATTCAAACAGCCTATGAACTTGGTAGTTCGCTGGCTTCATTCTGTGGTTGAAAAGTAAACTACTCCGTAGTAGATATGCTTCTATATGTTTATTGGAGTTTCCCAGATTAGACGTTGGCTGATTAATATTGTGATTGATATTTAGGACATATGCATGTGAAGGTGGCTGATTCTGCTTTGCTAATTAAATGTCTTTATAAAATTGATAAATGCAGTTAATAAAAAAGATCTATGCAATGTAATCAGTATTCAACCCTGCTCTAAGTTGAGCCTTTCTCTTCTTGTTAAGCAAATTAAAGAATTTGTATGATGTAGTGAAACAATTTGTACCCTTTGACACTAAAGTGGAGCTTTTGTCATGCTTTTATTAAGATTTGTTTGGTGTTGTAATCTGATGTCCCCAATACCTTTTCTTTGTTTCAGGTGATCATTGGTGGAGCTGTTGCTGCCTCAATTGTTGGCGGTGGAGCAGGAGCTGCTGCAGCTCCCTCAGGTGGAGCAGCTGCCGCAGAGGCACCCAAGGAAGAGAAGAAGCCAGAGAAGGAAGAAAGTGAGGATGAGGACATGGGTTTTTCACTCTTTGACTAGAGTGTTATTACATGTAACATCTCTTTTTATGGCTTGTCAGTATGTTATCAAGTGTGTCGAATTACTAGAATTTTGTTAGATGTTCAGTATACTAGATGAACTTATTCGCTGAGATTTTTGTTTGGAGCTGCTGAATACAGTTCTTGCCATGTCTTTAATTGTATGGTCTAATTATTTGAATGATAATGCCATTTTTATGCCTTCGTCCCTGTAACAGTTGCACCGTGTTTTTGAACTTGAGATGTTAGGAAATAAGAGTTAAGCTAATAAATGGTGTCTAACCTTTTGAACTTTTCACCGTTTAGGACCTATACCTTTTTTTTCACCGTTTGGGACCTGATCCCCCTTTTCCG

mRNA sequence

TGAATTTGGGCTACACTTTGAAGGCCAACCTGATCTTACTCCATCAAAAAGAGTTTTGAATAGTGCGGAGATCTCCAATTCTAGGGTTTTTGGTAACAACCACATATAAACTCTCTTCACTAGATTCCTAAACTCCGAAAGCCGTACTTTGAAACTCTGAACTCTACTCTCTCCTTTTTCTATCTCCTAAATCCTTCGCAAACAATCGACAATGGGAGTATACACCTTTGTTTGCAAGAAATCCGGCGCCGAATGGTCTGCCAAGCAACACTCCGGCGACCTTGAAGCCTCCGCCGACTGCCCCTTTACTCTTCAGAGGAAGCTCGTCCAGTCCGCCCTTAACTCCGGCGATTCCGGCGCCATCCAGTCATCTTTCAATTACATCACCCCTTCTTCCGCCGTCTCTCAGGTGATCATTGGTGGAGCTGTTGCTGCCTCAATTGTTGGCGGTGGAGCAGGAGCTGCTGCAGCTCCCTCAGGTGGAGCAGCTGCCGCAGAGGCACCCAAGGAAGAGAAGAAGCCAGAGAAGGAAGAAAGTGAGGATGAGGACATGGGTTTTTCACTCTTTGACTAGAGTGTTATTACATGTAACATCTCTTTTTATGGCTTGTCAGTATGTTATCAAGTGTGTCGAATTACTAGAATTTTGTTAGATGTTCAGTATACTAGATGAACTTATTCGCTGAGATTTTTGTTTGGAGCTGCTGAATACAGTTCTTGCCATGTCTTTAATTGTATGGTCTAATTATTTGAATGATAATGCCATTTTTATGCCTTCGTCCCTGTAACAGTTGCACCGTGTTTTTGAACTTGAGATGTTAGGAAATAAGAGTTAAGCTAATAAATGGTGTCTAACCTTTTGAACTTTTCACCGTTTAGGACCTATACCTTTTTTTTCACCGTTTGGGACCTGATCCCCCTTTTCCG

Coding sequence (CDS)

ATGGGAGTATACACCTTTGTTTGCAAGAAATCCGGCGCCGAATGGTCTGCCAAGCAACACTCCGGCGACCTTGAAGCCTCCGCCGACTGCCCCTTTACTCTTCAGAGGAAGCTCGTCCAGTCCGCCCTTAACTCCGGCGATTCCGGCGCCATCCAGTCATCTTTCAATTACATCACCCCTTCTTCCGCCGTCTCTCAGGTGATCATTGGTGGAGCTGTTGCTGCCTCAATTGTTGGCGGTGGAGCAGGAGCTGCTGCAGCTCCCTCAGGTGGAGCAGCTGCCGCAGAGGCACCCAAGGAAGAGAAGAAGCCAGAGAAGGAAGAAAGTGAGGATGAGGACATGGGTTTTTCACTCTTTGACTAG

Protein sequence

MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITPSSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00968Spo00968gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00968.1Spo00968.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00968.1.utr5p.1Spo00968.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00968.1.CDS.2Spo00968.1.CDS.2CDS
Spo00968.1.CDS.1Spo00968.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00968.1.utr3p.1Spo00968.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00968.1.exon.2Spo00968.1.exon.2exon
Spo00968.1.exon.1Spo00968.1.exon.1exon


Homology
[Close]
BLAST of Spo00968.1 vs. NCBI nr
Match: gi|902181805|gb|KNA09804.1| (hypothetical protein SOVF_150260 [Spinacia oleracea])

HSP 1 Score: 220.7 bits (561), Expect = 1.400e-54
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP
Sbjct: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
           SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD
Sbjct: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
[Close]
BLAST of Spo00968.1 vs. NCBI nr
Match: gi|698567626|ref|XP_009773828.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Nicotiana sylvestris])

HSP 1 Score: 156.8 bits (395), Expect = 2.400e-35
Identity = 88/121 (72.73%), Postives = 99/121 (81.82%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLVQ+AL++  SG +QSSF+Y+TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQLKGDLEASASCTYDLQRKLVQAALSTDSSGGVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAP-KEEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIGG      +GGGA AAAAPSGGAAAAE P  EEKK EKEES+D+DMGFSLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAAPSGGAAAAETPAAEEKKEEKEESDDDDMGFSLF 120
[Close]
BLAST of Spo00968.1 vs. NCBI nr
Match: gi|697148752|ref|XP_009628566.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Nicotiana tomentosiformis])

HSP 1 Score: 154.8 bits (390), Expect = 9.300e-35
Identity = 87/121 (71.90%), Postives = 99/121 (81.82%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLVQ+AL++  SG +QSSF+Y+TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQLKGDLEASASCTYDLQRKLVQAALSTDSSGGVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAP-KEEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIGG      +G GA AAAAPSGGAAAAEAP  EEKK EKEES+D+D+GFSLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGSGAAAAAAPSGGAAAAEAPAAEEKKEEKEESDDDDLGFSLF 120
[Close]
BLAST of Spo00968.1 vs. NCBI nr
Match: gi|747092607|ref|XP_011094078.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Sesamum indicum])

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-33
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SGAEWSAKQ +GDLEASAD  F LQRKLVQ+AL++  SGA+QSSF+Y+TP
Sbjct: 1   MGVFTFVCKGSGAEWSAKQLNGDLEASADSTFDLQRKLVQAALSADSSGAVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAV-AASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLF 120
           SSAV QVI+GGAV   + +GGGA AA A SGG AAAEAP  E+K E++E  D+DMGFSLF
Sbjct: 61  SSAVFQVIVGGAVGGGAFIGGGAAAAPAASGGGAAAEAPPAEEKKEEKEESDDDMGFSLF 120
[Close]
BLAST of Spo00968.1 vs. NCBI nr
Match: gi|976907616|gb|KVH94947.1| (hypothetical protein Ccrd_002991 [Cynara cardunculus var. scolymus])

HSP 1 Score: 146.0 bits (367), Expect = 4.300e-32
Identity = 81/120 (67.50%), Postives = 95/120 (79.17%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  G+LEASAD  +TLQRKLVQ AL+S  SG +QSSF+Y+ P
Sbjct: 1   MGVFTFVCKCSGGEWSAKQLKGELEASADSTYTLQRKLVQVALSSDSSGGVQSSFSYVLP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
            SAV QVIIGG    + +G GA AA+APSGGAAAAEAP  E+K E++E  D+DMGFSLFD
Sbjct: 61  DSAVFQVIIGGGGGGAAIGAGAAAASAPSGGAAAAEAPAAEEKKEEKEESDDDMGFSLFD 120
[Close]
BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR70_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150260 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 9.600e-55
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP
Sbjct: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
           SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD
Sbjct: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
[Close]
BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: A0A118JWU7_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_002991 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.000e-32
Identity = 81/120 (67.50%), Postives = 95/120 (79.17%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  G+LEASAD  +TLQRKLVQ AL+S  SG +QSSF+Y+ P
Sbjct: 1   MGVFTFVCKCSGGEWSAKQLKGELEASADSTYTLQRKLVQVALSSDSSGGVQSSFSYVLP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
            SAV QVIIGG    + +G GA AA+APSGGAAAAEAP  E+K E++E  D+DMGFSLFD
Sbjct: 61  DSAVFQVIIGGGGGGAAIGAGAAAASAPSGGAAAAEAPAAEEKKEEKEESDDDMGFSLFD 120
[Close]
BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: K4CC52_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.100e-31
Identity = 83/120 (69.17%), Postives = 93/120 (77.50%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLV++AL S  SG +QSSF+++TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQLKGDLEASASCTYDLQRKLVKAALASDSSGGVQSSFSFVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLFD 120
           SSAV QVIIGG      +GGGA AAA   GGAAA  AP EEKK EKEES D+DMGFSLFD
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAPSGGGAAAEAAPAEEKKEEKEES-DDDMGFSLFD 119
[Close]
BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: B9SNZ6_RICCO (60S acidic ribosomal protein P3, putative OS=Ricinus communis GN=RCOM_0440640 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.900e-31
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVC++S  EWSAKQ SGDLEASA  PF LQRKLV  A +S  SG +QSSF+Y+TP
Sbjct: 1   MGVYTFVCRQSDGEWSAKQLSGDLEASAAVPFELQRKLVNLAASSDSSGGVQSSFSYVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGG-AAAAEAPKEEKKPEK-EESEDEDMGFSL 120
           SSAV QVIIGG      +GGGA AAAAP+GG AAAAEAP EEKK E+  E  D+DMGFSL
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAAPAGGAAAAAEAPAEEKKKEEPAEESDDDMGFSL 120
[Close]
BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H2T6_SOLCH (Putative 60S acidic ribosomal protein P3-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.500e-31
Identity = 87/121 (71.90%), Postives = 95/121 (78.51%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK SG EWSAKQ  GDLEASA C + LQRKLVQ AL S  SG +QSSF+++TP
Sbjct: 1   MGVFTFVCKGSGDEWSAKQFKGDLEASASCTYDLQRKLVQVALASDSSGGVQSSFSFVTP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAE-APKEEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIGG       GGG  AAAAPSGGAAAAE AP EEKK EKEES D+D+GFSLF
Sbjct: 61  SSAVFQVIIGGGGG----GGGGAAAAAPSGGAAAAEAAPAEEKKEEKEES-DDDLGFSLF 116
[Close]
BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-28
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVC+ +G EW+AKQHSG++EASA  P+ LQR+LV +A  +     +QSSF+ +TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  SSAVSQVIIG--GAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSL 120
           SSAV QVI+G  G  A  + GGG G AAA   G AAAEAPKEEKK E++E  D+DMGFSL
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAA--SGGAAAEAPKEEKKEEEKEESDDDMGFSL 120
[Close]
BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.000e-26
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV++FVCK  G EW+AKQH GDLEASA   + LQRKLVQ+AL++  SG +QSSF+ ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLF 120
           +SAV  V+IGG        GG  AA    GG AAA   +EEKK E+ E E+ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119
[Close]
BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 7.900e-26
Identity = 70/121 (57.85%), Postives = 89/121 (73.55%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGVYTFVC+ SG EW+AKQ  G+LEASA  P+ LQR+LV +A  +  +  +QSSF+ ++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPK-EEKKPEKEESEDEDMGFSLF 120
           SSAV QVIIG     + +GGGA A AA   G AAAEAPK EEKK E++E  ++D+GFSLF
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAA--SGGAAAEAPKAEEKKEEEKEESEDDLGFSLF 119
[Close]
BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.400e-24
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK  G  WSAKQH G+LE+SA   + LQRKLVQ +L++  SG +QSSF+ ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGG---AGAAAAPSGGAA-AAEAPKE-EKKPEKEESEDEDMG 120
           +SAV QVI+GG       GGG   AG AA+  GGA  AA APKE EKK E+ E E+ D G
Sbjct: 61  TSAVFQVIVGGG------GGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEEEGDFG 118
[Close]
BLAST of Spo00968.1 vs. TAIR (Arabidopsis)
Match: AT5G57290.1 (60S acidic ribosomal protein family)

HSP 1 Score: 118.2 bits (295), Expect = 3.400e-27
Identity = 65/119 (54.62%), Postives = 81/119 (68.07%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV++FVCK  G EW+AKQH GDLEASA   + LQRKLVQ+AL++  SG +QSSF+ ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGGAGAAAAPSGGAAAAEAPKEEKKPEKEESEDEDMGFSLF 120
           +SAV  V+IGG        GG  AA    GG AAA   +EEKK E+ E E+ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119
[Close]
BLAST of Spo00968.1 vs. TAIR (Arabidopsis)
Match: AT4G25890.1 (60S acidic ribosomal protein family)

HSP 1 Score: 111.3 bits (277), Expect = 4.100e-25
Identity = 70/124 (56.45%), Postives = 86/124 (69.35%), Query Frame = 1 

		  

Query: 1   MGVYTFVCKKSGAEWSAKQHSGDLEASADCPFTLQRKLVQSALNSGDSGAIQSSFNYITP 60
           MGV+TFVCK  G  WSAKQH G+LE+SA   + LQRKLVQ +L++  SG +QSSF+ ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVSQVIIGGAVAASIVGGG---AGAAAAPSGGAA-AAEAPKE-EKKPEKEESEDEDMG 120
           +SAV QVI+GG       GGG   AG AA+  GGA  AA APKE EKK E+ E E+ D G
Sbjct: 61  TSAVFQVIVGGG------GGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEEEGDFG 118
The following BLAST results are available for this feature:
BLAST of Spo00968.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902181805|gb|KNA09804.1|1.4e-54100.hypothetical protein SOVF_1502... [more]
gi|698567626|ref|XP_009773828.1|2.4e-3572.7PREDICTED: 60S acidic ribosoma... [more]
gi|697148752|ref|XP_009628566.1|9.3e-3571.9PREDICTED: 60S acidic ribosoma... [more]
gi|747092607|ref|XP_011094078.1|1.7e-3370.2PREDICTED: 60S acidic ribosoma... [more]
gi|976907616|gb|KVH94947.1|4.3e-3267.5hypothetical protein Ccrd_0029... [more]
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BLAST of Spo00968.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QR70_SPIOL9.6e-55100.Uncharacterized protein OS=Spi... [more]
A0A118JWU7_CYNCS3.0e-3267.5Uncharacterized protein OS=Cyn... [more]
K4CC52_SOLLC1.1e-3169.1Uncharacterized protein OS=Sol... [more]
B9SNZ6_RICCO1.9e-3169.660S acidic ribosomal protein P... [more]
A0A0V0H2T6_SOLCH2.5e-3171.9Putative 60S acidic ribosomal ... [more]
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BLAST of Spo00968.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA3_MAIZE1.3e-2860.660S acidic ribosomal protein P... [more]
RLA32_ARATH6.0e-2654.660S acidic ribosomal protein P... [more]
RLA3_ORYSJ7.9e-2657.860S acidic ribosomal protein P... [more]
RLA31_ARATH7.4e-2456.460S acidic ribosomal protein P... [more]
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BLAST of Spo00968.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G57290.13.4e-2754.660S acidic ribosomal protein f... [more]
AT4G25890.14.1e-2556.460S acidic ribosomal protein f... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 37..119
score: 2.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome