Spo01035.1 (mRNA)

Overview
NameSpo01035.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_05183 : 3 .. 4697 (-)
Sequence length546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTTAACTATACAACGGGTACAATTCCTACATTTGACACACCAGCCTTGGCTCCAATCTCGGATGGAAATCCAACTCTAACTCCACCATCTACAATAGATGGTTCTCTTCCACCAACATCCACAGCTACAAGAGTGAGTGCTACTCTCAATCCTTCAGTAGGAATGTTTTCTCTGAGTATCGAAGAATTTAAGAATTTAAATTGGGTATATTGTGCAATAAGTTTACAAATAGGTGTATTTGGTGAATTATAAATATGACTTAACGGAGGACTAACGGAAAATCATAATAGGGGTAATTTGGTGAACAATATGAAAAAAAGACTGCTGTTGCAATTCTCATCACTTTGAAATAAGAGAGCAAGAGAGGAGCCTACGGTTTCTCTCTTACACCTCAGTTATATGCCATTGGGGACATCGTTCTTAGGAAACTGAGAATGAGTATGCGTAAAGGATACCACTTTGTTTTATAGTAGTTGGCCCCGTAAGGTAAAATATTACTAACACATACACATAAATGAAAGCAAAACTAAAGAAATATTACTAACACATACACATACACATACACATTCATATAAGGTAGTTATTTTTAGGATCAACACCTTCACGTTTCCTGTGACCGAAGCGCCATCACAGTATCAATTTTTTACTCTGTTCCAGTTATAGAAATCTATAAAAACAACAATGTGAAGTTAGTTCAAGCTTAACACAAAGTATGGAAAATAATCCATCATATAAGAAATGGTGAAACCCGTATTCCACATTGGGTTATTGACATTGGGTTGTTGTCTAGAATTCCGGAAAAAGGCAATCTGTTTGTCCATTTTCCAGGGTGAACCTAAATGAGTGTACTTGTGTTCGATGCAAGTTGTGACATTGTTGCATAAACCCCCTCCCTGATCAGCAAAACCAAGATTGATTAACTATTTTAAATGTAATATTGCATTTACCTTTTATATTATGAAGTTGTACCTTCCATTTGGAGGGTAGGAGTACAATCAAATATGATTTCCCCCCACCTAATTACGATACGCTATAGTGTTCCTTTTTTTTTACTATCTAAAAGTGGTTTTGAAATTGTTTGTGGATACAGGTTCAATTCTTAGGATTATTTCATTTACCCGGCGTTCTAGAGGATTCAAGTCCCTACAAAGGTGTTCCCTTTTCTCTACTTCCTTTCCTTTATTCTCAAATAAATTAGTGTGTGTTATGTACTTTTTCATAACCTCAAGTGGTAAGAAATTAGGGTCTATTCCATCTTATATGGATGATCTCAAGTGGTAATATGGATACAATTGAGTTGTTGGGACCTAACAAATAAAGAATACTAAGGTTAAGTTAAACTTAATTATTAACTAAATAACATCAAAGATGACTGCGGGGATTTTTGACAAAGACGTGGAAAAAATCAAATGAACTGCAACAATGCGTTGGGAAGACATGTACACTCAAGCTCAAAGTCAACAACAAAGGCTACATACAAGAGCTGACTGCTATTAAGGTCTTCCATGTTGAGACAGATAAAAAAATAACAACAAAACGACAAGGGAAGGAGATACTAAAAGAAATAAAAAAAAGGAGGGTCATCCAAACAAAAAAACACAAAATCAATAGGTACTGACCTTACCAAAACCCAAATCAAATACACATAATTAACCAAAACAAATTCATCATCATTATTACACATGCATTGTTTATAAAATGTTGTACTAACATGCTATTTAATATAACAGGACCACCACAACAACAGAGGAGATACCTACAACAAACACAACTCCAACTTCAAATCAAGACCCAATCCAGCTAACGGAAGATGACCCGAACTCGTGAAAGATGAGCCAACATAATACGATCATGTGCATTGCATGGGCTCTTCTTTTAAAGGGGATATTACTCTGTACTTTTTAATATTTCAAAACCATGTTAATAGGTGTAGATTTATGTGTTTTGTGTTATGTTTTTCCCTCTTGGGTATTGTTCTTTAAACAAACGATTAATAAAATAAAAGGTGCTTTTTTCAATAATGAAGATTATAGTTCCTGAAAAGTAGGTGTAAACTGTGGGAATAAAAATTCAGATGAAGAATTACAGGGGAGTAAAGTCTACTGCTATTAATGATATTATTGTGTAAGCGTGAGTTCATCAAATATTGATGATGAGGTCAAACCTGGATAAATAACTGGACAATTGCACTTCACCAATTAACAAAAAGAATTGGTATTTGTGAGGGTCTTAGCGGGTAAAGAAATCAGTTCCAGTTGTTGCATCTCCCCGTACGTTCAGGATTTAAATGTAGATACAATACAAACAAAAATAAAAAAAATCACTCACAAACCACCCAAATAATAATTAAAAAAAACACAAAATAAATAAAGATATCCAAGATTCTAAGATTAGCCCGTGCCTTACACGGGTCAGACGACTAGTTTGAATAATAATTAACCTATTATAAATTTGTTACTTAATCTTTCTCAATTACTCAGACCATACTTGAAAAAAAAATTGATTGTCACACTAATCCGTACTACTTTAGCTATTACAATTGTGTGTTTTTCCAAAAGTATATGTTTTTGTTATTTAATTTATAATATATAATTAATACTTTAATAAATTTATTGTTTTTATATATAAGTGAATTAAAAAAAAGAAGGAAAGTTTATGTTTTACCACCTAAAAAATTCTAATTTTTGTTTTATAAACTAAAATTCTCTAACTTTTATTTTAGCACTTAAATAAAATAAAATAAAAAATTTATTTTACCACATTTTAACGGCAAAGTTAACGACACCGTTAGTGAAGCTCACAAATTAAGCTTCCCCCAATTCTTTATCCAATTTATGCGATTTTTTCTTTACGTACTCCTCCTTCTCATTCAATTTTTCACCTTATTATTTACTCTTTAATTCTCACCACCCATTTTTGCAATTTAAATCTCCAAATTAATAAATTACAAACTTATATTATACAACATGCTTAAAAACATCGTGCAATTTTATGAGGGAAATGCCAAGGCAGTTGTTGAAGTGGGTCCAATAACGATTTAGTTAACTTTGCTATTAAAAGGTGGTAAAACCATATTTTAATTTACTTTTAGGTGGTAAAATAAAAGTTTGAGATATTAAGGTGGCTTAACACAAATTTGACATTTTCTTAGGTGGTAAAACACAAAAAAATCCTAGAAAAAAAAGTTTTATACGGAATACCAAACAAGTAAGACTTGAAAAAAAAATAAAGTATATGAACTTAGGAATTATTCTGGAATCCCTCATATATTCAGAAGACCATCTGTAATATGGCAACAAATTATATAAAAAAAATACATAATGTATTATAAGGAAACAATCATCAATCGGACAAAGACCGAATAACAAAAATAATAACAAAATTCGGTGTATCATCCGAGTCACTAACTAGTTACATAGTAAATTTTAAAGGGCAAAATAACAACAAATCCTAAATCAAAAGGATATAGACGTTAAAACAAAAAATCAACGGATAGGATACAATCTCAAAACCTCAACCAACATCAAACCCTAGGAATAAATACCGCCCTCCTATATATAAAGCCCCAAACCCCTTTTTTCTGATACAAACCCTAGATTAGCCGAACCTGCAGAAGAAACCCGTTTGCTTCTTCCCACTCTCTCGAACCCAAATTCAACACCAGGTATCATCAATCTTTCTCCATCTTTACATTGTCAAGTAATTTCTAAGTTCTGAATCTGATGTAATCTAGTATTTAATTAGTTAATTTTTGTTGCAGAGATGAAGATTGTTGCCGCTTACTTGTTGGCTGCTTTGGGCGGTAAAGCTTCCCCTGCTGCCGATGATGTCAAGAAAATTCTTGAATCAGGTATTTTCTCTCGTCCTTTTTTCATAATGGTAGCCAGATTTGATGGAGATACATAAAATATTTGTCTTGTTCGATTATGTAAGCTAATAGATCCGATCATAATGTTAATGTCTTGTGTTGGGTGATAATATGAGTTGGGTGATAATATGAGATGGATTTAAGTCATTGATAGGGAATGAAGTTGCTGGAATTGTTTAGGTTTTGGCGTTTTTTGTATATCATATTTTGATTATGATAGATTCATATCTATTGATTCAAGGATGAATTTGAGGGTTAATCTCGTCTTTGTTACACATGAATGCATATTTAAGTAGTTATATGTTAGAGTGTATTATGAAGTTCAGGCGTTTCGACGGAGCATCAAATTTTAGCCGTGAGTTATTTGTTGTTGCGCTTGCTATTTATTGAAATTATAGTTGCCCGTGAATAGTTATTGGAGTTGCCCTATAATTTGTTGTATGGTATACTTTTGCAGTATGCTTTGTAGTTGGTAGGTTGAGTTTGTTGGAGGATTAAATTGGTTTTCATATGAATTTTGATGACTCTGGTTGATTTTAATTAAACAACACCTAATTGTTTATCTTAATTAGGGTGAATTGGTGCACTCTTAAAATGTGTACTGGATTATGTTGCTGGTGTAACTGTGGTGTTGTGTCAGGGATACTTTCTACCTTAATTTTATTCACAGTAGAATACAAGGGATAATTAACGAGTGGAATTTGTTCCGAGCTTCAATCCGGAATGAAACTGCAAAGTGGGGTTGTAGAGGGAATGGGACTGTACTTTCCTATTCTCAAAGGAGTAAACTAGACCACCTAAACTTATGGAGTATTACATAA

mRNA sequence

ATGTTGCTTAACTATACAACGGGTACAATTCCTACATTTGACACACCAGCCTTGGCTCCAATCTCGGATGGAAATCCAACTCTAACTCCACCATCTACAATAGATGGTTCTCTTCCACCAACATCCACAGCTACAAGAATGAAGAATTACAGGGGAGTAAAGTCTACTGCTATTAATGATATTATTGTATTAGCCGAACCTGCAGAAGAAACCCGTTTGCTTCTTCCCACTCTCTCGAACCCAAATTCAACACCAGAGATGAAGATTGTTGCCGCTTACTTGTTGGCTGCTTTGGGCGGTAAAGCTTCCCCTGCTGCCGATGATGTCAAGAAAATTCTTGAATCAGTATGCTTTGTAGTTGGTAGGGATACTTTCTACCTTAATTTTATTCACAGTAGAATACAAGGGATAATTAACGAGTGGAATTTGTTCCGAGCTTCAATCCGGAATGAAACTGCAAAGTGGGGTTGTAGAGGGAATGGGACTGTACTTTCCTATTCTCAAAGGAGTAAACTAGACCACCTAAACTTATGGAGTATTACATAA

Coding sequence (CDS)

ATGTTGCTTAACTATACAACGGGTACAATTCCTACATTTGACACACCAGCCTTGGCTCCAATCTCGGATGGAAATCCAACTCTAACTCCACCATCTACAATAGATGGTTCTCTTCCACCAACATCCACAGCTACAAGAATGAAGAATTACAGGGGAGTAAAGTCTACTGCTATTAATGATATTATTGTATTAGCCGAACCTGCAGAAGAAACCCGTTTGCTTCTTCCCACTCTCTCGAACCCAAATTCAACACCAGAGATGAAGATTGTTGCCGCTTACTTGTTGGCTGCTTTGGGCGGTAAAGCTTCCCCTGCTGCCGATGATGTCAAGAAAATTCTTGAATCAGTATGCTTTGTAGTTGGTAGGGATACTTTCTACCTTAATTTTATTCACAGTAGAATACAAGGGATAATTAACGAGTGGAATTTGTTCCGAGCTTCAATCCGGAATGAAACTGCAAAGTGGGGTTGTAGAGGGAATGGGACTGTACTTTCCTATTCTCAAAGGAGTAAACTAGACCACCTAAACTTATGGAGTATTACATAA

Protein sequence

MLLNYTTGTIPTFDTPALAPISDGNPTLTPPSTIDGSLPPTSTATRMKNYRGVKSTAINDIIVLAEPAEETRLLLPTLSNPNSTPEMKIVAAYLLAALGGKASPAADDVKKILESVCFVVGRDTFYLNFIHSRIQGIINEWNLFRASIRNETAKWGCRGNGTVLSYSQRSKLDHLNLWSIT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo01035Spo01035gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo01035.1Spo01035.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01035.1.CDS.6Spo01035.1.CDS.6CDS
Spo01035.1.CDS.5Spo01035.1.CDS.5CDS
Spo01035.1.CDS.4Spo01035.1.CDS.4CDS
Spo01035.1.CDS.3Spo01035.1.CDS.3CDS
Spo01035.1.CDS.2Spo01035.1.CDS.2CDS
Spo01035.1.CDS.1Spo01035.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01035.1.exon.6Spo01035.1.exon.6exon
Spo01035.1.exon.5Spo01035.1.exon.5exon
Spo01035.1.exon.4Spo01035.1.exon.4exon
Spo01035.1.exon.3Spo01035.1.exon.3exon
Spo01035.1.exon.2Spo01035.1.exon.2exon
Spo01035.1.exon.1Spo01035.1.exon.1exon


Homology
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BLAST of Spo01035.1 vs. NCBI nr
Match: gi|902223758|gb|KNA19567.1| (hypothetical protein SOVF_060360, partial [Spinacia oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 4.500e-9
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 

		  

Query: 73  LLLPTLSNPNSTPEMKIVAAYLLAALGGKASPAADDVKKILESVCFV 120
           LLLPTLSNPN TPEMKIVAA LL+ALGGKA P  DD+KK L S C +
Sbjct: 6   LLLPTLSNPNPTPEMKIVAACLLSALGGKACPTVDDIKKNLISACSI 52
[Close]
BLAST of Spo01035.1 vs. NCBI nr
Match: gi|902195721|gb|KNA12934.1| (hypothetical protein SOVF_121820 [Spinacia oleracea])

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-8
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 8   GTIPTFDTPALAPISDGNPTLTPPSTIDGSLPPTSTAT 46
           GT+PT DTPALAP+SD NPTLTPPST DGSLPPTSTAT
Sbjct: 141 GTVPTSDTPALAPVSDANPTLTPPSTADGSLPPTSTAT 178
[Close]
BLAST of Spo01035.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RL41_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_060360 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.200e-9
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1 

		  

Query: 73  LLLPTLSNPNSTPEMKIVAAYLLAALGGKASPAADDVKKILESVCFV 120
           LLLPTLSNPN TPEMKIVAA LL+ALGGKA P  DD+KK L S C +
Sbjct: 6   LLLPTLSNPNPTPEMKIVAACLLSALGGKACPTVDDIKKNLISACSI 52
[Close]
BLAST of Spo01035.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1X3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_121820 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.200e-9
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 8   GTIPTFDTPALAPISDGNPTLTPPSTIDGSLPPTSTAT 46
           GT+PT DTPALAP+SD NPTLTPPST DGSLPPTSTAT
Sbjct: 141 GTVPTSDTPALAPVSDANPTLTPPSTADGSLPPTSTAT 178
The following BLAST results are available for this feature:
BLAST of Spo01035.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902223758|gb|KNA19567.1|4.5e-974.4hypothetical protein SOVF_0603... [more]
gi|902195721|gb|KNA12934.1|1.3e-886.8hypothetical protein SOVF_1218... [more]
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BLAST of Spo01035.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RL41_SPIOL3.2e-974.4Uncharacterized protein (Fragm... [more]
A0A0K9R1X3_SPIOL9.2e-986.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo01035.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01035.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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