Spo01059.1 (mRNA)

Overview
NameSpo01059.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L23A
Locationchr2 : 59808671 .. 59813763 (-)
Sequence length927
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCCTTATCACCAACATTTTGCAGGGAAAGGTTGGTTCTTACATAACATATGTCTTGCCTCAAAGCTATACTTTAGAAGGTGGACCATGGTGCACATAGAGCTACGTGCACCAAAAGAACACAGTATATAATTGAAAGAACATCTGGTTACGAGAAAAGAACATGAGTATTTTTTTTATTTAGGTTTTAATAAATAGTAAAATAATAAATTATTTTTATAATAAAATAGTGAAATATTATATCGCATGTTCTTTTGCCGTAGTGTCGTGCTCTTTTACTTATGCACACATGTTCTTTTGGTGCACGTAGCTCTATGTGCACCACAGTCCATAGTCTACGAATTGAGAGGGACTAAGAAAATAATTAAGTTAAAATTATTAGTGACTCTATGCTTAATAGTAACTATCCTTCGCGGGTTTAACTAAGGCATCGGTAACAAAATAGACAATAACTTTGACCCGAGGGTCAATATAATCCAATTTAACATGTTAGCCATCTAAAAAGTAAGGGGAACATTTACCACTACACCAAATATTCCCCATTGCATAGAAGAATGGTATATACTCGATGCATTATGAATGTCATTGACCATAAAAGATGATATTTCATATCAATCTTTACCCTACTTGTTTCATGTTCGGCAAAACTAGTTGTTGTTATATCAAAATTAGTAACTATCTTAAAAACTTATTCCTCTGTATTTATTTAAGGGATACACTTGTCTTTTCCGGCCGTAATTATTTAAGAGATACACTTGTCATTTTTAATAATTTATCAACCCCACCATCTAATTAAATAATCTATCTACACCCCAACCCCACTCCCACTACCTAAAATGACATAGTCCCCACTTGTTTTTCTTATTAAAATATCTACTCAACCCCACTTGTTTTATTACTTTATTTCATTTAATTCTTTTTCTTAATACACGTGTCCGGCCAAATGTATCTCTTAACACAAATAAATACGGAGGGAGTATGTCTGAACTACCTCTCATTAATTTTTGAACAATATTGTATTATTATCGATTTAGTGGAGTTCGATGATATTAGTTTTCCACCAAAATAAAATAAAAATTAAGGATGTTTTTATTATTTTTATTTTTTTGTTTTCATTTTTTCTTTTTTAGGATAGTTGGGTGTTTCAAAGGGGAAGGGACGCACCAATTCAGGCTTATCCGCTACTCCTACTCTCTCATCTGCGCTCCTTTTCTCTCTCCTCACTCTCCACCTCTCTCTACCAGCCATGGCGACCACCGCGCCAAACCTGCATTCTCTCTCATCATCTTTCGCCTTCTCAAACCCTTCATCTAATGTATCTGCTACTTCTTTCACTTTCCAAATTCCCAACAAAAAAGCTCAAATTTCCTGCATTTCCTCCAAAAAGCTTCATACCCAGAAGAGTTTCAATTTTCATGGTATGTGCCCTGCAAATTCGAACTTGTTTAGTTTTTTTATATTTATTATGTAATTGATTTATACTCCGTATTGCTTGTTGCTTGTTGCTTATTGCGTATTGCTTATTATAATGTTGAATTGCAAATATGCATATACTTTTAGGATTATTGATTACATTTATACTCCAAGTGGGAAACTAATGTGGGTTTAGAATCTGAGATGTGCCTGTATGAAGGAAAATTGAAGGGGGTGATACATTAGAGTTATGACGTAATATCAAATCCCGTCTACATCATTGTCTTTAGTGGCTTGATGTACAATGGGAAGTGAGTATAACTGTAGATTGTCGATACATTTGAAAAAATGATTGGTTGTTTGAATTGAGAATGGTGATAAGAGAAATATGAGGCTGAAGGTTTTCCCTTCTGATATACGAAGTATGTATTAATTTTAGTTGAAAGTGTGCTGGGAGATGATTTATCTATAAAGTATCCTATAGAAAGTAGTTGTGTCCTCCTACTGAGAAATTATAGAACTAGCTGTGATGAACAGATTAGTCTGAACGAAGTTATGTGACCGGCTCGTGCATTACATTCACCAGTACATTGATAAGCAGAATGTTGTTGTCTTCCAATCTGTCATGATGATTTTCTAGCTTTTTTTTACTTGTTGTGTAAAGGATTGGCGTCTTGGTTAATGGTGGCTTTGAAGAAATTTAGGACAAGATTATCTTTTGCAATGTTTTTTTGGTAATATATTGCAAGTGAGGTTTAGTATTAGTAAAATAAATGCTGTTTTCTTCTTACGAATCCTAGACATTCTTAGCATGACATTCGGAATACATTGGTATCAATCAAACAGACACAAATTGTATGCTTGCAATTTGGAGGTGAAGTTAGACGTTTTTTACAAATGTTGTTGGAGACTCAAAAGATGAATTGGGCAATTGGCAAACATAATAACTGATATGTTGTTCTACAACACCATGATTCTAGGACACTATACCATTTTTAGCAAAAAACCAATGCTGCACTCTTACCTAAGTCCCTACTGCTTTGGCCTTTAAAAAAAAAAAGCCCCTACAGCATTGAAAATCATACTAAATCATGGGAAGGTAGTTGCGATTCAGAAAATCTATCAGCCTATGGTGAAGCTGCACCCTTTGTTTCTAAATAGTCAAAAGTATGACAAACATTTGTAAATTTCCTCTCTTTGTAGCCTTGTGTTTGCATGTAGAGACTAGCTTAATTGTTTAATGTTTTGAGGTCGCAAATGATGTTATGCACCATGTTCCCAAAAGAATATAGTTTAAAGTAAAATAACACATCTCATTTTCATTCATAAACCATAGTCCATAGTAAATAACATACTATTCATAATAAAAGAATACGTAGTAAAAATAACATACAATAAAAAATAAAAAAAAACATGCAAGTATGATTAAAGGACATGCAACTATGCAAGTATAATGAACAAATATTAACTGGTACATACTGCTCTTGGGTGCAGATGCACTAAATCGAATACTGTATATATCATTGCCCTTTGTTGCTCGCCGTCACCCAAAAAGGGATCTTAGAGCCAAAGTGGATGATGAATATAAGAGATTAACGAAACATTTGAAAAAAACCTTGGTTTTTGGAGTTGGGGATTAGTGCTTTAAAAAAAATGGTTGACCGTGTGGGAATATGTAGGTAGGGATTAGAGATAACTCGATAAGGGAAATATGAGGTTGGCTCTTCTTATGTATGTATTTTCTTTGAATGTGTGCCGGGAGATGGGTTTTTTTTGCAAAGTGTCCTATTGAAACTAATTGTATCCCCTGCTGAGAAATTCTAGACCCAGCTGTGATGAACAGCTCTGCTTGGCCATCAGTCCATCACTATGTATGCAGCTCATGCATTGCATTCGCCAGTACTGTAATTGGCAATACCTGTTGTCTTCCACGATGATATTCTATCTTATCTCTTCTTATTGTGTGAAGGATTGGTGGTATTGGGGCTTTGAAGAAATTTAGGAATTAGGACAAGTTTTTTGTGTGGCAAAATCGTAGATATACTTAGCGTGACTATAGGAATGCCGAATGCATTTGTATTACGCAAACAAGCCCAATTGCATGTTCTCCTGAGTTCAAATGTGACGAGTATTACAAATGTTGTTGGAGTCGCAAAAGATGAATTGACAAGCATTCTGCCCCACCATGATTCTAGGACATCATACCACTTGGGCTGTTTAGAAATAAACCAGTGCTGCATTTTGACGTAAATCTACAGTTCTACCAATTCCTTGGAAGGTAGTACGGATTCAGAAAATCTATCAGCTTATGGTTATGCTGCATCCTTTGCTTCTATATAGTCAAAGTATGCCACACCATTCATAAATTTCTTCTCCTTGCAGCTAGCTACTTTGAAACACCCAATTGTCCTCTAAAAAGAAAAATAACCTCCTTAATTTTTATTTTGTGTGGAAACTTACATGATTGATATCGAGTCCCTTGTAAATTGAGAATATTGTTCTTAAATTAGTAAGAGACAAAAGCTTTTAAGGTAGATACTAATCCTGCTAAAACAACTAGTTTTGCCAAACATGAAATAAGTAGCATAACGATTGATGTGACTGGGTAATGTTTGGTCTAATTGATTAAAGTTTCCTGTACTTTAATGGTAATGTGCTAATGTCAATCAGTCTGTTCAAGTACTGTTTATAGGGATGTCAGTTGTGTAAAGTGGCAACTTTTATTTTGGCCATTTACTGAATCCAGTATATAAATGTGAGTTAATCTAACAAAATAGTTACTTGCAGATGCAGTTACTCCGATGAACAAGCCTAGTTTTGGTAGGGATCTGATGGTTGCCCAGGCCACCGAAGCAGTTGCTCCGACTACAGAGGAAGCAGCTACTTCTCAACCCAAAACATCAAAAAAGGCTAAAAAACTGAAGTACCCTCGGAGAGTACTTGATGTGTATCAGATCCTTCAATCCCCCATCATAACTGAGGCCGCCATAAAGAATATTGCTGATGAGAACTCACTGCTTTTCACTGTTGATGTTCGTGCTGATAAGAAGATGATTAGAGAGGCTATCAGTAACTTTTTTGGTGTGAAAGTTCGAAAAGTAAATACTTTGATCAGGTAAACTATAAGACCTTTTATTTTCCATTATCCTGCTGTTAAATTAATCCCTTTTACATCTTTCATACCATTGTAATGCCTTTTCTGGACAAAACCTAGAATTTTCAGCATAGTTCATTAATTATACATTTTATGTTGTTTTACAGGCCTGATGGAACAAAGAAAGCGTATATTATGTTGAATAAAGAGTACAATGCTTCAGAGCTGGCAAAGAAGATAGGAATTTTCCCAGGTGGAAACTAACTTGAATACTTTTAGATGTATAGTTGTGGCCTTCTTTCTCCTTTGTTGACGACGAAAGCTAAGTTGGAGCCTTGTTTGGAGATGGGATCACTAGTAATTTGCAATTATCAAGTATTTCACTCTTAGCCTTTCAAGTCTCTGTATCTCTAAAGTGTGTAACTTCCGTCAGTGAGTATTGCACTTAAGTTTGCTCATCCTTTTTACCTTCTCGAGCACCAGAAGTAGGTGTATTTCGCTCTGTATTTTTTTGTTTTTGTTTTACATTCGCTGTTGTAGTGTTAAGGTTCAAGGCTTTAAGCGGGATCAATGTGTTTTAG

mRNA sequence

ATGGGTGGCCTTATCACCAACATTTTGCAGGGAAAGGGGAAGGGACGCACCAATTCAGGCTTATCCGCTACTCCTACTCTCTCATCTGCGCTCCTTTTCTCTCTCCTCACTCTCCACCTCTCTCTACCAGCCATGGCGACCACCGCGCCAAACCTGCATTCTCTCTCATCATCTTTCGCCTTCTCAAACCCTTCATCTAATGTATCTGCTACTTCTTTCACTTTCCAAATTCCCAACAAAAAAGCTCAAATTTCCTGCATTTCCTCCAAAAAGCTTCATACCCAGAAGAGTTTCAATTTTCATGATGCAGTTACTCCGATGAACAAGCCTAGTTTTGGTAGGGATCTGATGGTTGCCCAGGCCACCGAAGCAGTTGCTCCGACTACAGAGGAAGCAGCTACTTCTCAACCCAAAACATCAAAAAAGGCTAAAAAACTGAAGTACCCTCGGAGAGTACTTGATGTGTATCAGATCCTTCAATCCCCCATCATAACTGAGGCCGCCATAAAGAATATTGCTGATGAGAACTCACTGCTTTTCACTGTTGATGTTCGTGCTGATAAGAAGATGATTAGAGAGGCTATCAGTAACTTTTTTGGTGTGAAAGTTCGAAAAGTAAATACTTTGATCAGGCCTGATGGAACAAAGAAAGCGTATATTATGTTGAATAAAGAGTACAATGCTTCAGAGCTGGCAAAGAAGATAGGAATTTTCCCAGTTGGAGCCTTGTTTGGAGATGGGATCACTAGTAATTTGCAATTATCAAGTATTTCACTCTTAGCCTTTCAAGTCTCTGTATCTCTAAAGTGTGTAACTTCCGTCACACCAGAAGTAGGTGTATTTCGCTCTGTATTTTTTTGTTTTTGTTTTACATTCGCTGTTGTAGTGTTAAGGTTCAAGGCTTTAAGCGGGATCAATGTGTTTTAG

Coding sequence (CDS)

ATGGGTGGCCTTATCACCAACATTTTGCAGGGAAAGGGGAAGGGACGCACCAATTCAGGCTTATCCGCTACTCCTACTCTCTCATCTGCGCTCCTTTTCTCTCTCCTCACTCTCCACCTCTCTCTACCAGCCATGGCGACCACCGCGCCAAACCTGCATTCTCTCTCATCATCTTTCGCCTTCTCAAACCCTTCATCTAATGTATCTGCTACTTCTTTCACTTTCCAAATTCCCAACAAAAAAGCTCAAATTTCCTGCATTTCCTCCAAAAAGCTTCATACCCAGAAGAGTTTCAATTTTCATGATGCAGTTACTCCGATGAACAAGCCTAGTTTTGGTAGGGATCTGATGGTTGCCCAGGCCACCGAAGCAGTTGCTCCGACTACAGAGGAAGCAGCTACTTCTCAACCCAAAACATCAAAAAAGGCTAAAAAACTGAAGTACCCTCGGAGAGTACTTGATGTGTATCAGATCCTTCAATCCCCCATCATAACTGAGGCCGCCATAAAGAATATTGCTGATGAGAACTCACTGCTTTTCACTGTTGATGTTCGTGCTGATAAGAAGATGATTAGAGAGGCTATCAGTAACTTTTTTGGTGTGAAAGTTCGAAAAGTAAATACTTTGATCAGGCCTGATGGAACAAAGAAAGCGTATATTATGTTGAATAAAGAGTACAATGCTTCAGAGCTGGCAAAGAAGATAGGAATTTTCCCAGTTGGAGCCTTGTTTGGAGATGGGATCACTAGTAATTTGCAATTATCAAGTATTTCACTCTTAGCCTTTCAAGTCTCTGTATCTCTAAAGTGTGTAACTTCCGTCACACCAGAAGTAGGTGTATTTCGCTCTGTATTTTTTTGTTTTTGTTTTACATTCGCTGTTGTAGTGTTAAGGTTCAAGGCTTTAAGCGGGATCAATGTGTTTTAG

Protein sequence

MGGLITNILQGKGKGRTNSGLSATPTLSSALLFSLLTLHLSLPAMATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFPVGALFGDGITSNLQLSSISLLAFQVSVSLKCVTSVTPEVGVFRSVFFCFCFTFAVVVLRFKALSGINVF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo01059Spo01059gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo01059.1Spo01059.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01059.1.CDS.6Spo01059.1.CDS.6CDS
Spo01059.1.CDS.5Spo01059.1.CDS.5CDS
Spo01059.1.CDS.4Spo01059.1.CDS.4CDS
Spo01059.1.CDS.3Spo01059.1.CDS.3CDS
Spo01059.1.CDS.2Spo01059.1.CDS.2CDS
Spo01059.1.CDS.1Spo01059.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01059.1.exon.6Spo01059.1.exon.6exon
Spo01059.1.exon.5Spo01059.1.exon.5exon
Spo01059.1.exon.4Spo01059.1.exon.4exon
Spo01059.1.exon.3Spo01059.1.exon.3exon
Spo01059.1.exon.2Spo01059.1.exon.2exon
Spo01059.1.exon.1Spo01059.1.exon.1exon


Homology
[Close]
BLAST of Spo01059.1 vs. NCBI nr
Match: gi|902202220|gb|KNA14201.1| (hypothetical protein SOVF_109700 isoform A [Spinacia oleracea])

HSP 1 Score: 370.5 bits (950), Expect = 2.800e-99
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197
[Close]
BLAST of Spo01059.1 vs. NCBI nr
Match: gi|75335589|sp|Q9LWB5.1|RK23_SPIOL (RecName: Full=50S ribosomal protein L23, chloroplastic; AltName: Full=PRPL23; Flags: Precursor)

HSP 1 Score: 370.2 bits (949), Expect = 3.600e-99
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRR+LDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRILDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197
[Close]
BLAST of Spo01059.1 vs. NCBI nr
Match: gi|902202221|gb|KNA14202.1| (hypothetical protein SOVF_109700 isoform B [Spinacia oleracea])

HSP 1 Score: 361.7 bits (927), Expect = 1.300e-96
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH  V
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH--V 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 195
[Close]
BLAST of Spo01059.1 vs. NCBI nr
Match: gi|731354926|ref|XP_010688865.1| (PREDICTED: 50S ribosomal protein L23, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 292.4 bits (747), Expect = 9.500e-76
Identity = 161/219 (73.52%), Postives = 175/219 (79.91%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKK------------- 104
           MATT+PNLHSLSSSF+ +N SSNVSATSFTFQIP K  QISC SSKK             
Sbjct: 1   MATTSPNLHSLSSSFSLTNHSSNVSATSFTFQIPKKTPQISCFSSKKTVFVHPTELHGMS 60

Query: 105 -----------LHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTS 164
                       HTQ SFNFHDAV+ M +P  GRDLMVAQATEAVA TTE  A SQ K++
Sbjct: 61  YGFSNVGTIASAHTQNSFNFHDAVSSMKRPGLGRDLMVAQATEAVATTTEAPAASQSKST 120

Query: 165 KKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFG 224
           KK +K+KYPRRVLDVYQILQ PIITEAAIK+I DEN+LLFTVDVRADKKMIR+AISNFFG
Sbjct: 121 KKREKIKYPRRVLDVYQILQVPIITEAAIKSIGDENTLLFTVDVRADKKMIRDAISNFFG 180

Query: 225 VKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFP 240
           VKVRKVNTLIRPDGTKKAYIML+KEYNAS+LAKKIGIFP
Sbjct: 181 VKVRKVNTLIRPDGTKKAYIMLSKEYNASDLAKKIGIFP 219
[Close]
BLAST of Spo01059.1 vs. NCBI nr
Match: gi|460408177|ref|XP_004249523.1| (PREDICTED: 60S ribosomal protein L23a-like isoform X1 [Solanum lycopersicum])

HSP 1 Score: 114.8 bits (286), Expect = 2.700e-22
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1 

		  

Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD YQILQ P+ TE+A+K I D N+L+F VD+ ADKK
Sbjct: 46  RPKTLKKDRNPKYPRISAPGRNRLDQYQILQCPLTTESAMKKIEDNNTLVFIVDIHADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            IR+A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIRDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3X1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109700 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.900e-99
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197
[Close]
BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5X3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109700 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 8.900e-97
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH  V
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFH--V 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 195
[Close]
BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EHG0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g203900 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 6.700e-76
Identity = 161/219 (73.52%), Postives = 175/219 (79.91%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKK------------- 104
           MATT+PNLHSLSSSF+ +N SSNVSATSFTFQIP K  QISC SSKK             
Sbjct: 1   MATTSPNLHSLSSSFSLTNHSSNVSATSFTFQIPKKTPQISCFSSKKTVFVHPTELHGMS 60

Query: 105 -----------LHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTS 164
                       HTQ SFNFHDAV+ M +P  GRDLMVAQATEAVA TTE  A SQ K++
Sbjct: 61  YGFSNVGTIASAHTQNSFNFHDAVSSMKRPGLGRDLMVAQATEAVATTTEAPAASQSKST 120

Query: 165 KKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFG 224
           KK +K+KYPRRVLDVYQILQ PIITEAAIK+I DEN+LLFTVDVRADKKMIR+AISNFFG
Sbjct: 121 KKREKIKYPRRVLDVYQILQVPIITEAAIKSIGDENTLLFTVDVRADKKMIRDAISNFFG 180

Query: 225 VKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGIFP 240
           VKVRKVNTLIRPDGTKKAYIML+KEYNAS+LAKKIGIFP
Sbjct: 181 VKVRKVNTLIRPDGTKKAYIMLSKEYNASDLAKKIGIFP 219
[Close]
BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: K4D3P5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.900e-22
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1 

		  

Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD YQILQ P+ TE+A+K I D N+L+F VD+ ADKK
Sbjct: 46  RPKTLKKDRNPKYPRISAPGRNRLDQYQILQCPLTTESAMKKIEDNNTLVFIVDIHADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            IR+A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIRDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Match: A0A061FN72_THECC (Ribosomal protein L23AB isoform 1 OS=Theobroma cacao GN=TCM_042948 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.500e-22
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 1 

		  

Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK
Sbjct: 46  RPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: RK23_SPIOL (50S ribosomal protein L23, chloroplastic OS=Spinacia oleracea GN=RPL23 PE=1 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 2.300e-101
Identity = 195/197 (98.98%), Postives = 196/197 (99.49%), Query Frame = 1 

		  

Query: 45  MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 104
           MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV
Sbjct: 1   MATTAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKKAQISCISSKKLHTQKSFNFHDAV 60

Query: 105 TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRVLDVYQILQSPII 164
           TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRR+LDVYQILQSPII
Sbjct: 61  TPMNKPSFGRDLMVAQATEAVAPTTEEAATSQPKTSKKAKKLKYPRRILDVYQILQSPII 120

Query: 165 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 224
           TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK
Sbjct: 121 TEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNK 180

Query: 225 EYNASELAKKIGIFPVG 242
           EYNASELAKKIGIFP G
Sbjct: 181 EYNASELAKKIGIFPGG 197
[Close]
BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 8.500e-24
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 1 

		  

Query: 135 SQPKTSKKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREA 194
           ++P+T K  K    PR  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK I++A
Sbjct: 51  TKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDA 110

Query: 195 ISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
           +   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 111 VKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.500e-24
Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 1 

		  

Query: 116 LMVAQATEAVAPTTEEAATS--------QPKTSKKAKKLKYPR------RVLDVYQILQS 175
           L VA+A ++   T ++ A          +PKT KK +  KYPR        LD YQIL+ 
Sbjct: 18  LKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKY 77

Query: 176 PIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIM 235
           P+ TE+A+K I D N+L+F VD+RADKK I+ A+   + ++ +KVNTLIRPDGTKKAY+ 
Sbjct: 78  PLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVR 137

Query: 236 LNKEYNASELAKKIGI 238
           L  +Y+A ++A KIGI
Sbjct: 138 LTPDYDALDIANKIGI 153
[Close]
BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.500e-23
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1 

		  

Query: 136 QPKTSKKAKKLKYP------RRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT    +K KYP      R  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK
Sbjct: 46  RPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.200e-23
Identity = 55/108 (50.93%), Postives = 77/108 (71.30%), Query Frame = 1 

		  

Query: 136 QPKTSKKAKKLKYPR------RVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT KK +  KYPR        LD Y IL+ P+ TE+A+K I D N+L+F VD++ADKK
Sbjct: 46  RPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. TAIR (Arabidopsis)
Match: AT2G39460.1 (ribosomal protein L23AA)

HSP 1 Score: 112.5 bits (280), Expect = 4.800e-25
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 1 

		  

Query: 135 SQPKTSKKAKKLKYPRRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREA 194
           ++P+T K  K    PR  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK I++A
Sbjct: 51  TKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDA 110

Query: 195 ISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
           +   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 111 VKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
[Close]
BLAST of Spo01059.1 vs. TAIR (Arabidopsis)
Match: AT3G55280.1 (ribosomal protein L23AB)

HSP 1 Score: 110.9 bits (276), Expect = 1.400e-24
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1 

		  

Query: 136 QPKTSKKAKKLKYP------RRVLDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK 195
           +PKT    +K KYP      R  LD YQIL+ P+ TE+A+K I D N+L+F VD+RADKK
Sbjct: 46  RPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 105

Query: 196 MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAKKIGI 238
            I++A+   + ++ +KVNTLIRPDGTKKAY+ L  +Y+A ++A KIGI
Sbjct: 106 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGI 153
The following BLAST results are available for this feature:
BLAST of Spo01059.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902202220|gb|KNA14201.1|2.8e-9999.4hypothetical protein SOVF_1097... [more]
gi|75335589|sp|Q9LWB5.1|RK23_SPIOL3.6e-9998.9RecName: Full=50S ribosomal pr... [more]
gi|902202221|gb|KNA14202.1|1.3e-9698.4hypothetical protein SOVF_1097... [more]
gi|731354926|ref|XP_010688865.1|9.5e-7673.5PREDICTED: 50S ribosomal prote... [more]
gi|460408177|ref|XP_004249523.1|2.7e-2253.7PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo01059.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R3X1_SPIOL1.9e-9999.4Uncharacterized protein OS=Spi... [more]
A0A0K9R5X3_SPIOL8.9e-9798.4Uncharacterized protein OS=Spi... [more]
A0A0J8EHG0_BETVU6.7e-7673.5Uncharacterized protein OS=Bet... [more]
K4D3P5_SOLLC1.9e-2253.7Uncharacterized protein OS=Sol... [more]
A0A061FN72_THECC2.5e-2252.7Ribosomal protein L23AB isofor... [more]
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BLAST of Spo01059.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RK23_SPIOL2.3e-10198.950S ribosomal protein L23, chl... [more]
R23A1_ARATH8.5e-2452.460S ribosomal protein L23a-1 O... [more]
RL23A_FRIAG8.5e-2446.360S ribosomal protein L23A OS=... [more]
R23A2_ARATH2.5e-2351.860S ribosomal protein L23a-2 O... [more]
RL23A_TOBAC4.2e-2350.960S ribosomal protein L23a OS=... [more]
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BLAST of Spo01059.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G39460.14.8e-2552.4ribosomal protein L23AA[more]
AT3G55280.11.4e-2451.8ribosomal protein L23AB[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 154..237
score: 4.5
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 156..229
score: 2.99
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 158..238
score: 21
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 158..218
score: 2.4
NoneNo IPR availablePANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 136..238
score: 3.4

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding