Spo01262.1 (mRNA)

Overview
NameSpo01262.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal S30-like protein
Locationchr4 : 74658655 .. 74665686 (-)
Sequence length808
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGGATGGAGTATCATCCACATTCACGACCGCGTCAACTTGTTCTTCCACCTTCAACTTCATGATGTTCACATGTTCCTCCAATTATCTGAATTTTTAAGCTTCACATGTTCAACTACAACAAACAGTTTTGAGCACATAATTTTTTGGTAATATACATGACAATGCTTAACTTTAAGCTGGTCAGAAATGAAATCAATGTTTTAAAAATTTCAAGCAACAAAAAAAAGCTAGCTTTACTCCCCTTCGGTCTAATGGGCTTTGCAATCTCTATTAACTTACATCTCCACCTTATAATGGAAAAGAATTTTTAAAAAGCAAATGAAGTTGAGATAGTAACATCTCAACTCCTAATTGGCAATGACGTTGATATTCCATTTCCATCAACATAGGATTTATCATTGGTGGACTAATTTTTGTAAACACAAAAAGACTAACATAAAAAATATGCAACCAATTTGGATATCACAACCAAATCGAATAATCATCATCATCACTGTTTTGTCAAATTTGGTCTAATTAAAAAATTTATTCTCAGACAAAAACCCTAAAAAATCGAAAACCCTAAGAAAAAATGGTTTGATTATGAAACTCAGACAAATCACAATGGAATACGAAGATTTCTCAGCAATTATATAACATCTAACTCTAATCATCTTAACAACAAATATAAACAACATAAATTATTAATCATACAAAAAAATCGAATGAAAGTTTTAAAAAGACTTACTTGGATGTTGAATCAGAGTGGGTGATCGACTAGCGTCGTCGGGGATCGACGAGCGGCGCAGTGGTGAGTGGAGGAGGCGCCGTGTGAGAGATTAGGGTTTCACCGTTTCAGTTTAGAGAGAGAGAGTGAGAGAGAGTGACTGAGTGAGAGACTGAGAGAATGAGAGATAGGCGTGAGAAATTCTAGGGTTTTCTTAGACCTAAAGGCTAAAGCCCAAACAAAAGAAGCCCAGAAATAATTAAAGATTTTTAGTAATTTTTTAAAAAAACATCTAAACGGGTTAGCGGGTTGGGTTAGCGGGTTGACAGGTTGACGGGTTGGCGGGTTGACCTGTGACCCAATAATTAAACGGGTTAGGCGGGTTGCTTTCGGGTTGGAGTTTTCAACCTGACCCAACCTATTTATTAAACGGGTTGGGTTGGGTCGACCTGTTTAGTTAAACGGGTTGAAAAATCTTGACCCAACCCAATAATAACGGGTTGGGTTCGGGTCGGGTTGGTGGGTTGGGTCAGCTTTTGCCAGCTCTAGAATTAAGATCAAATATGGGTATGATACCTTATTTGATCAACTACCATAAAACCACAACCGTTTCAAATCAACTATTTATTTAGTATTCTATTAATTAATTCAATTGATGAAAACGGTCAAAAGTAAATTGAGGAAAATGAAGAATTAAGAAAGAATTCATTACCTTGTATGAATCAATTCATGGTTTCAATGTCACTTTATTTGCTGAAAACGGTTAGAGGGTAGATGGATTGAGAAGTGAATTTAATTAATGGTTGAAGGTATCTCAATTAAATGGGCATTTGATTTGAAGGGTGAAGGAAAAATATGAAGGGGATGGGATCATGGAAGATGAGGGGAGGCTGAAAACGGGGAAATGAATAAAGGGGAAAAGGGAGAAAATTTTGGTGAAAATACAAAATGACACGTGGCAGATGTGGTTAGGATTTTATAAAAGAAAAGATGACATGTGGCAGATGTGGTTTGGGTTTTTATAGACTAGGTATAGATTGTATTGATTTTTGGTTGTTAATAACATCACATAACCTTGGATGATGCGACGTAAGCAGGAGAGTTCTATGTGACACATAAATATTTTTCGCAATGCCTTTTAATATATTAGTATAGATAGATAAGGAAGGCGTTACGCCGCTGTTGATGATGATCCAAAGGTGGAGTGTTGGCGTTAGTTGGGTTTCAATGTTAGTGCATGCTTGACTACTTCAACTAAGAATATGAATAATATGAAGAAGACGGTGGTTGGAAATGAGTGTCATGGGCTCAAGGGCATTCTTAGTTTATTGGGCATGACAAAGAAGTCGGTTTTTCTTGGGTTGAGAGAGTAAGATGTAATAGAGTGAGGGAGTCGGTTATTTTTTTTTTGGGAAACAAATCGTGTTATGTCAAGTAGTGGAATGATCAATTATGATTAAAACCGATTTTTAGAGTGTTTAAATTTTGAAATGTTGGGGGTGTAAATGTACTTTTGGCCGGAGTGACGAATGAGAATGGTTAGATGAGGTTTTGGAGGCTTTGCCTTAAGGCCCTATTTGGTTAGGAGCTGTTAATTATTATCTGGTCTGATTAGCTGTTAGTTGTTTGTATTAGCTTGTTTGACTAGCTGGTTGAATTAGTTGTTTGTGTAACAGTGTTTGGTAAATTAGCTGTGAGCTGGTAGCTGTTTAATATATAAAATGACCATTAAGGAAATTGATATAATTTGTTGTTTGAAACTTTGTTTCTTATCAATATTAAACAAATGGTTTATTGTGTTGATTATTTTCTTTTTATGTCTTGAATAAGCATTGAATAAATAAAACAAGTTTATTTTAAATAAATTATTCTTAATTTGAAATTTTAAATATACAAATTTTTGATTTGCAAATAGAGAAACACTACTCATAACATTACAAACATGATTACAAACAAACAAACATTTACATCAAAAAAAAATAACATTACAAACATGATTACAATAGTTTTCAAGTATTTCAAAGTTCTAATATATAGGGATTGTTTTGTACTCCCTCTGTATTTTTTTAAGAGATACACTTGTCTTTTCCGGCCGTATTTATTTAAGAGATACACTTGCTATTTTTGGTAACTTATCAACCCCACCATCTAATTAAATAATCTATTTACACCCACCCCCACCACCATCCCCTAAAATGACATGGTCCCCACTTATTTTACTTATTAAAATATCTACCCAACCCCACTNTCTATTTACACCCACCCCCACTACCATCCCCTAAAATGACATGGTCCCCACTTATTTTACTTATTAAAATATCTACCCAACCCCACTTGTTTTATTACTTTATTTCATTCAATTCTTTTTCTTAATACCCGTGCCCGACCAAGTGTATCTCTTAAAAAAATACGGAGAGAGTACAAAAGAGGGAAAGGAAATGCCATCAAGAAAGGGAAAGAAGGGGAAATGAATGTAAAAGTGTTTGATTTCAAAGGTTGTTTGTTTCATAATAACCCCACCACAATCCGTCACTTAGGAGTCACGACTTTGCACCTCCCCCACCCCCCTTCACCGGCACGGCGCGCGACGCCTCCCTTCCCCCTTCTCCAGCCCTCCGGAGTCTCCCTCCCCCCTTTTTCGGCGCCTCCTCTTCCCCTCAACACCAGGTGATATGTTTCTCTCTCCTCTCCTCATCTCCTCTCCTCTCCTCTCCTCTCTTTTAGATCTGGTGGTTGGGGTTGTTCACGGGTGGTTTCGAGGTCGTTGGTTTGTTTTTTAAGTAGGTGTGGTGATTTTGGTGGGTGGGTGGGTTGTTTACATGGTGGATTTTGGGTGGGTTTTGTGGTGGTTGACCCCGATGAACGATGACAACACCGACGAATGATGACAATTACCGACGAACGATGACAACACCGACGAATGATGACAATTACCGACGAACGATGACAACACCGACGAAAATGGCGACTCCGACGAGGATGACGGCTCCGACGATCTAATGAGGGTGTCATGTGGTTGTGGGATGGTGTTGGCATGGAGGTGTGTTAGTGGTCATGGTGGATGTGTTGTTGACTTAGGGAAAGGGAATGGAAATATCATAGGGGGTGGGGTGAAATGGTGAATCAGAGTAGAGCCATTTGGGGGTAAAGGTAATGATTAAAATGACATAACAAACAACAAGGGAACTTGCCAAATTCATTCCCATCCCTTTCCTAAATACCTCCAACCAAACAGCCCCATAATGCAATACAATACACGAGTCTAGTGTAACAAATATATTGAACATTCAAACATCAAGTAAGAAGAAAATTGAGTTTAGATGACGGAGGCTAATGTAGAACCAAAATTCTGAATTTAAATTGTAAAAAACATTAAAAATTCTATACTCAATTAGAATTAGAAATTAAAATAAATAAATTAGTTTACATGGATACAAAGTTACGGATAGAAAAAAGAAAATAAAGGTCAAATGAGGAGACTAATGTGTGAATAATGTTTTTAGAGGGAAACTAGTATTTGGGCCGGGGCGATGCCCCGGGTTGATACACGTATAAAAATTTTAAATAAATTTCAATACTCTGTATTATTAAATTGTCATTTATTATATTTTGTTATGAAAAAATGACATATAATTTGATTTGGAGTAGTGGTTAATTGTTTGTTTACAATTAGAGGTCACGGGTTCAAGACTTGTACCACACATATTTATCATTTTTAAATAATTGTGTATGACATGGAACATTGAAATGAGATTAGTGCGAGTGCCACGTGGCACATAGGCTTGTTTATCCACGCCTTTTAATATATTAGTATAGATATTTGAGGTTGGTAAGGGTTGTAATTTTAGGCAATGTTAGGACAAAATAGGAAATTGATATTCACTCTCTCAAACCTCTAATTACAAAAAAGTCCTATAGTGAGCTTTTTCAGAATTACTCCAAAACTCTCTTCCAATCATCTCCTAACCAAACACTTCTAATTAGCATTTTTTAAAGGTTAATCCTTTAATTCAATTCAAAAAGCTCTTTTTCCTCAAACATTTAATTCAATATAAAAATTGTTGTTTTTAATTTCTTTAAAAAAAAATTAAAAAAAATCAGCCAGCAGTTTAATTTTGGGCCCCGAATTTGTGTATGTCCACCTAGATCTCCCAAGAGCAGGCCCCGTCATATAAAACCCAATTGTTTTTTTTCTTTTTTTCTTTTATCTTTCTTATCAGCCGTATAAAGACTCACACCAAAGCTGAAATCCTGAAATCCTAAAACCCTAGCCGGCGCATTCGAGGAGAGAGAAAAGCGAAGCAACTGCAGCAGAAGAACAACAGCTATGGGTAATCTCCAAATCCCTCTTCTTCTCTTTAAAGAACTTTCAATATCCACTTTTTCATTCGAAAAGTTCGTCACTTTTGAGTTTCAATGGTGTTTATGTTTATGATTTGGTTATGGTGATCATTGATTTTCAGGTAAGGTTCACGGATCATTGGCGCGTGCCGGTAAGGTGAGAGGGCAAACCCCCAAGGTTGCCAGTCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTTTGCAATACAATCGCCGTTTTGTTACTGCTGGTACGTTTTTCTCTCTCTTCTAATTTTTGAAGTTGTTTCTGGATTTCACTTTGATTAATGTTTAAAGCATATAGATTAATTTGTTTGTGGAATCACCAAATAATAGTGATTATAGTTAATGCGATTGTTTGCTTTAAATTGAAGGACATTAACGATAAACCGCTATCAGAACATCAGATGATTTTTCTCCTTTTATCTGATTTCATCCCTTTCCGTTTCTTGTACTTGGTGCGATTTTTGTGAGTGCATTAAAATATACTAGTAGTAATTTAGTAAGATACTAGTTTGATTTTAGGTAGAAAAAACCATCAAATTATTGATTTGATACCGAGCTTTGTTATCACGCTGTTAATTAAGCACATTTTCCCCTTAAATTTCTCTATGTTGCTTGATGTAGAATATGAGTGAGTTGTTTATGTTGTCTTTTAGTTTTAGATTTATTACCGTTTATGCTAAAATTAATCTTTTTCCTTGTTGGACTTTTAAGTGCCATGAAATAATGATATAGCATATAAGTAGCTGTTAATTCACTGTTGGCGAATGCAGAAAACTTACCGAAGTTCATTGTTTGAGCTGAATTTGTGGGATGGGGGTTGTGTTTGTTGTTTGTGTTTGTGAATTACTGCGAATTATTGCTACATTGGCTTTCTGTTTGGTTGCCATGTTCTTATTTTAAAAATCTAGCATGTTAGGTATCAAATGGGGTATAACTGAGTTCATTAATCCTTGTTGATCTTGAATGGTTTTGGTTAAACCTTTTAAAATGTCGCTGAAGTTTATGTTATTGAAGTTCAATTGGTAGTTTGGTATGGTTTTTGGTATAGTTGTGAGCCTAACTGAAGTTTATGCTATAAACTTATAGTAGCATTGTAATTTGTAGTGTTATACTGTAACTTTACACCAATATAAGTTTTTGGTATAAACTAGCAATGTAAGATGAGTATTATACTGTGTGCTAGTCCTTTTTGTCCCTTTGTCCTACTCAGTTAGGCTTTGATATACTTCCTCCATTCTTTTTACTTGCACCATTTGATGTTTCATGCTTTGCTTACGTGCTTGATCATCTTGTTCTACTTTTCAATATAGATATGAAAGTTATTTATAGCCAAAATAATATTTTTGCGACAAGGTAATTATGTGCTTGATTATTTTGTTCTGGTTTTCATTATGTTAAATTTGATTTCAGTTGTTGGATTCGGCAAGAAGAGGGGACCCAATTCCTCAGAGAAGTAAAGAGATTGAATAGCAAAATGTGAAGTCATGCACGCAGCAAGAATGTCATATTGCTTTAGGATATCTTAGTATTGCTCTATTACCTCTTGCCTCCGGATGTTAATGGCTTCAGAATCGTATTTTATTTTATTTTGAGCTAGAGAGCTAAACTATGTAGTTGGAGCCTTGTTTTTCCGAGCTAGTTAAAAATTGTCACCTTGTCGCATATTTGCACTATTCCATTTGAAGTTTTGTTGGTCTTGAAGCGAATAGGTGATCAACGTGTACCTATTGGCCATGAATCTAGGTTTCTTTTACAAGGAAATTTTGTTGCATATTTGTGATTTATTGTTCTTATCACGGTTTGATCAACTTTCTGGTAATTTGTTAGATTATCTTGAAACATGTTCTTGCTGATGATATGCTATCAAGAATTGGTGCATACATATTCTTAATAGTTTGGATTTTCTTCTCAATTTCAATCCGCCAATCATTCATTTGAAAA

mRNA sequence

ATGGGTGAGGATGGAGTATCATCCACATTCACGACCGCGTCAACTTGTTCTTCCACCTTCAACTTCATGATGTTCACATCCGGCGCATTCGAGGAGAGAGAAAAGCGAAGCAACTGCAGCAGAAGAACAACAGCTATGGGTAAGGTTCACGGATCATTGGCGCGTGCCGGTAAGGTGAGAGGGCAAACCCCCAAGGTTGCCAGTCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTTTGCAATACAATCGCCGTTTTGTTACTGCTGTTGTTGGATTCGGCAAGAAGAGGGGACCCAATTCCTCAGAGAAGTAAAGAGATTGAATAGCAAAATGTGAAGTCATGCACGCAGCAAGAATGTCATATTGCTTTAGGATATCTTAGTATTGCTCTATTACCTCTTGCCTCCGGATGTTAATGGCTTCAGAATCGTATTTTATTTTATTTTGAGCTAGAGAGCTAAACTATGTAGTTGGAGCCTTGTTTTTCCGAGCTAGTTAAAAATTGTCACCTTGTCGCATATTTGCACTATTCCATTTGAAGTTTTGTTGGTCTTGAAGCGAATAGGTGATCAACGTGTACCTATTGGCCATGAATCTAGGTTTCTTTTACAAGGAAATTTTGTTGCATATTTGTGATTTATTGTTCTTATCACGGTTTGATCAACTTTCTGGTAATTTGTTAGATTATCTTGAAACATGTTCTTGCTGATGATATGCTATCAAGAATTGGTGCATACATATTCTTAATAGTTTGGATTTTCTTCTCAATTTCAATCCGCCAATCATTCATTTGAAAA

Coding sequence (CDS)

ATGGGTGAGGATGGAGTATCATCCACATTCACGACCGCGTCAACTTGTTCTTCCACCTTCAACTTCATGATGTTCACATCCGGCGCATTCGAGGAGAGAGAAAAGCGAAGCAACTGCAGCAGAAGAACAACAGCTATGGGTAAGGTTCACGGATCATTGGCGCGTGCCGGTAAGGTGAGAGGGCAAACCCCCAAGGTTGCCAGTCAAGACAAGAAGAAGAAGCCCCGTGGACGCGCTCACAAGCGTTTGCAATACAATCGCCGTTTTGTTACTGCTGTTGTTGGATTCGGCAAGAAGAGGGGACCCAATTCCTCAGAGAAGTAA

Protein sequence

MGEDGVSSTFTTASTCSSTFNFMMFTSGAFEEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSSEK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo01262Spo01262gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo01262.1Spo01262.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01262.1.CDS.4Spo01262.1.CDS.4CDS
Spo01262.1.CDS.3Spo01262.1.CDS.3CDS
Spo01262.1.CDS.2Spo01262.1.CDS.2CDS
Spo01262.1.CDS.1Spo01262.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01262.1.utr3p.1Spo01262.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01262.1.exon.4Spo01262.1.exon.4exon
Spo01262.1.exon.3Spo01262.1.exon.3exon
Spo01262.1.exon.2Spo01262.1.exon.2exon
Spo01262.1.exon.1Spo01262.1.exon.1exon


Homology
[Close]
BLAST of Spo01262.1 vs. NCBI nr
Match: gi|674900075|emb|CDY32875.1| (BnaC09g33220D [Brassica napus])

HSP 1 Score: 125.2 bits (313), Expect = 7.000e-26
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 1 

		  

Query: 36  RSNCSRRT------TAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRF 95
           RS CSRR       +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRF
Sbjct: 15  RSYCSRRKRKQRSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRF 74

Query: 96  VTAVVGFGKKRGPNSSEK 108
           VTAVVGFGKKRGPNSSEK
Sbjct: 75  VTAVVGFGKKRGPNSSEK 92
[Close]
BLAST of Spo01262.1 vs. NCBI nr
Match: gi|641836965|gb|KDO55923.1| (hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 21  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 80

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 81  TAVVGFGKKRGPNSSEK 97
[Close]
BLAST of Spo01262.1 vs. NCBI nr
Match: gi|703063147|ref|XP_010086894.1| (40S ribosomal protein S30 [Morus notabilis])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-25
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 

		  

Query: 42  RTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRG 101
           R +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRG
Sbjct: 73  RKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 132

Query: 102 PNSSEK 108
           PNSSEK
Sbjct: 133 PNSSEK 138
[Close]
BLAST of Spo01262.1 vs. NCBI nr
Match: gi|567918728|ref|XP_006451370.1| (hypothetical protein CICLE_v10009868mg [Citrus clementina])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 57  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 116

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 117 TAVVGFGKKRGPNSSEK 133
[Close]
BLAST of Spo01262.1 vs. NCBI nr
Match: gi|567178433|ref|XP_006401298.1| (hypothetical protein EUTSA_v10015110mg [Eutrema salsugineum])

HSP 1 Score: 123.6 bits (309), Expect = 2.000e-25
Identity = 65/88 (73.86%), Postives = 69/88 (78.41%), Query Frame = 1 

		  

Query: 20  FNFMMFTSGAFEEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRA 79
           F    FT        +R    R  +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRA
Sbjct: 12  FTITQFTLAFQHSCSRRKKKERSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 71

Query: 80  HKRLQYNRRFVTAVVGFGKKRGPNSSEK 108
           HKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 72  HKRMQHNRRFVTAVVGFGKKRGPNSSEK 99
[Close]
BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: A0A078H2N5_BRANA (BnaC09g33220D protein OS=Brassica napus GN=BnaC09g33220D PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.900e-26
Identity = 67/78 (85.90%), Postives = 69/78 (88.46%), Query Frame = 1 

		  

Query: 36  RSNCSRRT------TAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRF 95
           RS CSRR       +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRF
Sbjct: 15  RSYCSRRKRKQRSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRF 74

Query: 96  VTAVVGFGKKRGPNSSEK 108
           VTAVVGFGKKRGPNSSEK
Sbjct: 75  VTAVVGFGKKRGPNSSEK 92
[Close]
BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: A0A067ELF8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042287mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 21  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 80

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 81  TAVVGFGKKRGPNSSEK 97
[Close]
BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: V4UK23_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009868mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 

		  

Query: 31  EEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFV 90
           +++++R     + +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFV
Sbjct: 57  QQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFV 116

Query: 91  TAVVGFGKKRGPNSSEK 108
           TAVVGFGKKRGPNSSEK
Sbjct: 117 TAVVGFGKKRGPNSSEK 133
[Close]
BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: W9QWZ6_9ROSA (40S ribosomal protein S30 OS=Morus notabilis GN=L484_005479 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.100e-25
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 

		  

Query: 42  RTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRG 101
           R +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKR+QYNRRFVTAVVGFGKKRG
Sbjct: 73  RKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRG 132

Query: 102 PNSSEK 108
           PNSSEK
Sbjct: 133 PNSSEK 138
[Close]
BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Match: V4NAB3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015110mg PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.400e-25
Identity = 65/88 (73.86%), Postives = 69/88 (78.41%), Query Frame = 1 

		  

Query: 20  FNFMMFTSGAFEEREKRSNCSRRTTAMGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRA 79
           F    FT        +R    R  +AMGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRA
Sbjct: 12  FTITQFTLAFQHSCSRRKKKERSKSAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRA 71

Query: 80  HKRLQYNRRFVTAVVGFGKKRGPNSSEK 108
           HKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 72  HKRMQHNRRFVTAVVGFGKKRGPNSSEK 99
[Close]
BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=3 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 1.800e-26
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62
[Close]
BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_MOUSE (40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Match: RS30_HUMAN (40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.500e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 

		  

Query: 48  KVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 106
           KVHGSLARAGKVRGQTPKVA Q+KKKK  GRA +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Match: AT2G19750.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62
[Close]
BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Match: AT4G29390.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62
[Close]
BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Match: AT5G56670.1 (Ribosomal protein S30 family protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.000e-27
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 

		  

Query: 46  MGKVHGSLARAGKVRGQTPKVASQDKKKKPRGRAHKRLQYNRRFVTAVVGFGKKRGPNSS 105
           MGKVHGSLARAGKVRGQTPKVA QDKKKKPRGRAHKRLQ+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 106 EK 108
           EK
Sbjct: 61  EK 62
The following BLAST results are available for this feature:
BLAST of Spo01262.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|674900075|emb|CDY32875.1|7.0e-2685.9BnaC09g33220D [Brassica napus][more]
gi|641836965|gb|KDO55923.1|1.6e-2580.5hypothetical protein CISIN_1g0... [more]
gi|703063147|ref|XP_010086894.1|1.6e-2593.940S ribosomal protein S30 [Mor... [more]
gi|567918728|ref|XP_006451370.1|1.6e-2580.5hypothetical protein CICLE_v10... [more]
gi|567178433|ref|XP_006401298.1|2.0e-2573.8hypothetical protein EUTSA_v10... [more]
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BLAST of Spo01262.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A078H2N5_BRANA4.9e-2685.9BnaC09g33220D protein OS=Brass... [more]
A0A067ELF8_CITSI1.1e-2580.5Uncharacterized protein (Fragm... [more]
V4UK23_9ROSI1.1e-2580.5Uncharacterized protein OS=Cit... [more]
W9QWZ6_9ROSA1.1e-2593.940S ribosomal protein S30 OS=M... [more]
V4NAB3_EUTSA1.4e-2573.8Uncharacterized protein OS=Eut... [more]
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BLAST of Spo01262.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS30_ARATH1.8e-2696.740S ribosomal protein S30 OS=A... [more]
RS30_RAT3.5e-1775.840S ribosomal protein S30 OS=R... [more]
RS30_MUSSI3.5e-1775.840S ribosomal protein S30 OS=M... [more]
RS30_MOUSE3.5e-1775.840S ribosomal protein S30 OS=M... [more]
RS30_HUMAN3.5e-1775.840S ribosomal protein S30 OS=H... [more]
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BLAST of Spo01262.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G19750.11.0e-2796.7Ribosomal protein S30 family p... [more]
AT4G29390.11.0e-2796.7Ribosomal protein S30 family p... [more]
AT5G56670.11.0e-2796.7Ribosomal protein S30 family p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 48..104
score: 2.0
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 46..106
score: 1.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005730 nucleolus
molecular_function GO:0003735 structural constituent of ribosome