Spo01514.1 (mRNA)

Overview
NameSpo01514.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01296 : 43564 .. 46186 (-)
Sequence length2421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCTTCAACGCCCCATCCCTGTTCTTTTCTCTCCATCAGAAAAATAAAATATAAAAAAAATACCGAAATTGGGAAACGAAAGAGGAAGGAATGATCAGGAATGGGCTTAAGCCAAAAATATTGTTAGCCCTATCTTCCTAACGGTGCTATAGGTTAGGACTACTTACGTGGGTCAACCTAATCCCCGCCTTATGTTTATAAAAAATTAAAAATGGAAATAAGTTAGCACTGTTTTCCTTTCTCCCAATCACATAAAAGATCATTATTTCATGTCACTTCATTTCATCTCCAAAGAAGCAAATCTGTAAGTCTTTGATAGACAGCTATGTATACGAGACTGTAATAAACGTGGTGGTCCTAAACTATCTAATAATTTCTATTCAGACACACATAAGGGTATAGAGAGAAGAGGGGGCACATAGAATGAATAATGGATCTCTATTTATAAGTAAGGTATTGTATATCCAATTCCTTCAATTCAAAATAACTCAGCCACCTAGCTAACAGAATGAAACATTCTTGCTTGATTCTATATTTCATCATTATTGCTACAACTTTCTGTTTCTTCACCAAATACACAGGTCTATGTTCGTCACCTCTTTTCAGTGCATCCTTTCCTACAAACAATCTACACGGACGAGCATCAAGGAGAGCTTTGAGCACACATCTCATTCAACATGAATCAGAAGCAGTTAAGGTCAGCTTATAAATAATTATCACATCTTATATGCCATCATCAAGTTAATATTTATCATTATTCACAAGACATACATCAAAATCGTGATAGTTTATATATTTCATCATTATTCACAAGATAGTTTAACATTGAAATCATGATAGTTGATATTTCATCATTATTCACGAGATAGTGTTACATCAAAATCATGATAAACACACAGGTTTTGAATGCAACTAAGCGTTCACCTCACCAAGTAGCATACAGAAGGGAAGAACCTGTGAAGAGCGGCATCGATGGTGATGAGGGAGAAGATGAATTAGTCTATCACATAGATTATCACGGTGTGACGACCCATCCTGGTTCAAATCCTAAACATGGAAAGCCATAAAACAGTCATCAGATCGTTTTTTATTCTTTTGAATATATGTAACATGATCTAGCTAATCAATGAGATGTAGTTGTTCTAATTTCATTTTACCACCTCGAACTTGAGTAAAAAAAAATGAGAGCATTGCAAACCTTACAAGCCTCAATCATGTCTATTCCGCTGTATCTTCAACACCTTATGCCATACCAAGATCTTTCAACATGAAGTAAATTAAAAATCCATTATAAAAAGATGCATCCTTCTGCAAAATATCAGACTAGAGATAGAAAGTAAATTTGATCAGCTCTCACCAGGCAAGTTTTCCTTTTAAACAGTAAGTACCACCATAATAAAATGTATGGAATAGCACAGTTGGAATAAAGCTGTGTTGCTCAACAGGAAACATCAGAGCTTGTGGAAGAGATAAATAAGCAAGACTGCAACAGTCAAGATACATATCTGTCTGGAAGGTAATGGTGAAACCAAAATCCAGGAAAAGAATGATTTGATATAATTTGATTGATTAATAATGTAAGGAAAGCATGCCGTTCATATATCGCATTCTGGCCTCCTTGTACAAGACATGCAAAGTTTTAAAGCTCTCTTTTGCATCATCAAAGAGAACTTCATTACAAAAATTCGACTTAACATGGGCAAATGCAGCCTCTGCATCTTCCTTGTGTTGATTTATAAACGACAAAGTTTCGCAAATTCCGTCTGAAGTAAAATAACAAAAATCCCGAGCGTATTCTTCTCTCCCACTGAGATGCTCGAGCCATCTGAGCCAATGAAAAGGATCATCGTCTCTCTCAACAGCCATTTGCAAAAATTCGAAAGAATCTGCAAAGCTGGATAGTTCACTTATTTTATCAGTGACTATATTGAAAATGGCTCTCTGGTTCTTGTCAAACCAGTTTTCAGTCCCTGTAGGCAAAGAACTCAAAGCAACCAAGCAAGCTTTCCGAAGCACGGGCTCAGCACTGCTAATAAGCTTGATTGCAACATGCAAAATATTCACAGAAATAGCTAACATCCCAGAAGCGTAACAAGCAATAGAATCAGGCCCTTTTTTCTGGATCCACTGATAAAGTGCAATATGCGCAAATCCTTCCCACCTGTTTTCATCAAAAGTTATCAACAGAAAGGGTAATCAGCAAACCTTAATGTCAATTAAGTTGGAACCTTGGAGGGTTAGAGGTTTACTCTGAAACCCAAGGACTTCATACCCAATGAAAAAAAAAGTTAGTAGTTAGCATGAAAGGAAATGATGGCAAGAATGTTAATGAAGGCAATGCTGAGATCAGTATCCAGGTTGTATTTAGAAAACCTAAGGGCTCAATAACTCGGGAAACGGAATAAAAATTAAATTCCGGGATCACTGGTGACTTGAAATGGAGGGGTACTTCAAATGATTGAGTAACAAGAAGATTAGAATTAGACTCAAACTATAAGCATGTGTTAATAAGACCAACATAGTGTAATGGTAAAGATAACTGGCTAAGAACTGTCTGTACCAGATCTGTAAGATTGTCATATTGAACTCAGGTACGAGGACATTACATTAAATATGTAGCCA

mRNA sequence

ACTCTTCAACGCCCCATCCCTGTTCTTTTCTCTCCATCAGAAAAATAAAATATAAAAAAAATACCGAAATTGGGAAACGAAAGAGGAAGGAATGATCAGGAATGGGCTTAAGCCAAAAATATTGTTAGCCCTATCTTCCTAACGGTGCTATAGGTTAGGACTACTTACGTGGGTCAACCTAATCCCCGCCTTATGTTTATAAAAAATTAAAAATGGAAATAAGTTAGCACTGTTTTCCTTTCTCCCAATCACATAAAAGATCATTATTTCATGTCACTTCATTTCATCTCCAAAGAAGCAAATCTGTAAGTCTTTGATAGACAGCTATGTATACGAGACTGTAATAAACGTGGTGGTCCTAAACTATCTAATAATTTCTATTCAGACACACATAAGGGTATAGAGAGAAGAGGGGGCACATAGAATGAATAATGGATCTCTATTTATAAGTAAGGTATTGTATATCCAATTCCTTCAATTCAAAATAACTCAGCCACCTAGCTAACAGAATGAAACATTCTTGCTTGATTCTATATTTCATCATTATTGCTACAACTTTCTGTTTCTTCACCAAATACACAGGTCTATGTTCGTCACCTCTTTTCAGTGCATCCTTTCCTACAAACAATCTACACGGACGAGCATCAAGGAGAGCTTTGAGCACACATCTCATTCAACATGAATCAGAAGCAGTTAAGGTTTTGAATGCAACTAAGCGTTCACCTCACCAAGTAGCATACAGAAGGGAAGAACCTGTGAAGAGCGGCATCGATGGTGATGAGGGAGAAGATGAATTAGTCTATCACATAGATTATCACGGTGTGACGACCCATCCTGGTTCAAATCCTAAACATGGAAAGCCATAAAACAGTCATCAGATCGTTTTTTATTCTTTTGAATATATGTAACATGATCTAGCTAATCAATGAGATGTAGTTGTTCTAATTTCATTTTACCACCTCGAACTTGAGTAAAAAAAAATGAGAGCATTGCAAACCTTACAAGCCTCAATCATGTCTATTCCGCTGTATCTTCAACACCTTATGCCATACCAAGATCTTTCAACATGAAGTAAATTAAAAATCCATTATAAAAAGATGCATCCTTCTGCAAAATATCAGACTAGAGATAGAAAGTAAATTTGATCAGCTCTCACCAGGCAAGTTTTCCTTTTAAACAGTAAGTACCACCATAATAAAATGTATGGAATAGCACAGTTGGAATAAAGCTGTGTTGCTCAACAGGAAACATCAGAGCTTGTGGAAGAGATAAATAAGCAAGACTGCAACAGTCAAGATACATATCTGTCTGGAAGGTAATGGTGAAACCAAAATCCAGGAAAAGAATGATTTGATATAATTTGATTGATTAATAATGTAAGGAAAGCATGCCGTTCATATATCGCATTCTGGCCTCCTTGTACAAGACATGCAAAGTTTTAAAGCTCTCTTTTGCATCATCAAAGAGAACTTCATTACAAAAATTCGACTTAACATGGGCAAATGCAGCCTCTGCATCTTCCTTGTGTTGATTTATAAACGACAAAGTTTCGCAAATTCCGTCTGAAGTAAAATAACAAAAATCCCGAGCGTATTCTTCTCTCCCACTGAGATGCTCGAGCCATCTGAGCCAATGAAAAGGATCATCGTCTCTCTCAACAGCCATTTGCAAAAATTCGAAAGAATCTGCAAAGCTGGATAGTTCACTTATTTTATCAGTGACTATATTGAAAATGGCTCTCTGGTTCTTGTCAAACCAGTTTTCAGTCCCTGTAGGCAAAGAACTCAAAGCAACCAAGCAAGCTTTCCGAAGCACGGGCTCAGCACTGCTAATAAGCTTGATTGCAACATGCAAAATATTCACAGAAATAGCTAACATCCCAGAAGCGTAACAAGCAATAGAATCAGGCCCTTTTTTCTGGATCCACTGATAAAGTGCAATATGCGCAAATCCTTCCCACCTGTTTTCATCAAAAGTTATCAACAGAAAGGGTAATCAGCAAACCTTAATGTCAATTAAGTTGGAACCTTGGAGGGTTAGAGGTTTACTCTGAAACCCAAGGACTTCATACCCAATGAAAAAAAAAGTTAGTAGTTAGCATGAAAGGAAATGATGGCAAGAATGTTAATGAAGGCAATGCTGAGATCAGTATCCAGGTTGTATTTAGAAAACCTAAGGGCTCAATAACTCGGGAAACGGAATAAAAATTAAATTCCGGGATCACTGGTGACTTGAAATGGAGGGGTACTTCAAATGATTGAGTAACAAGAAGATTAGAATTAGACTCAAACTATAAGCATGTGTTAATAAGACCAACATAGTGTAATGGTAAAGATAACTGGCTAAGAACTGTCTGTACCAGATCTGTAAGATTGTCATATTGAACTCAGGTACGAGGACATTACATTAAATATGTAGCCA

Coding sequence (CDS)

ATGAAACATTCTTGCTTGATTCTATATTTCATCATTATTGCTACAACTTTCTGTTTCTTCACCAAATACACAGGTCTATGTTCGTCACCTCTTTTCAGTGCATCCTTTCCTACAAACAATCTACACGGACGAGCATCAAGGAGAGCTTTGAGCACACATCTCATTCAACATGAATCAGAAGCAGTTAAGGTTTTGAATGCAACTAAGCGTTCACCTCACCAAGTAGCATACAGAAGGGAAGAACCTGTGAAGAGCGGCATCGATGGTGATGAGGGAGAAGATGAATTAGTCTATCACATAGATTATCACGGTGTGACGACCCATCCTGGTTCAAATCCTAAACATGGAAAGCCATAA

Protein sequence

MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESEAVKVLNATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo01514Spo01514gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo01514.1Spo01514.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01514.1.utr5p.1Spo01514.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01514.1.CDS.2Spo01514.1.CDS.2CDS
Spo01514.1.CDS.1Spo01514.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01514.1.utr3p.1Spo01514.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01514.1.exon.2Spo01514.1.exon.2exon
Spo01514.1.exon.1Spo01514.1.exon.1exon


Homology
[Close]
BLAST of Spo01514.1 vs. NCBI nr
Match: gi|902225627|gb|KNA20131.1| (hypothetical protein SOVF_054620 [Spinacia oleracea])

HSP 1 Score: 240.4 bits (612), Expect = 1.600e-60
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESE 60
           MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESE
Sbjct: 1   MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESE 60

Query: 61  AVKVLNATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP 119
           AVKVL+ATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP
Sbjct: 61  AVKVLDATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP 118
[Close]
BLAST of Spo01514.1 vs. NCBI nr
Match: gi|870851641|gb|KMT03673.1| (hypothetical protein BVRB_8g190110 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 153.7 bits (387), Expect = 2.000e-34
Identity = 80/119 (67.23%), Postives = 90/119 (75.63%), Query Frame = 1 

		  

Query: 1   MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASF-PTNNLHGRASRRALSTHLIQHES 60
           MKHS +ILYF II TT C F +YTGLCSSPL   SF PTNN +  A RRALSTH+ +H  
Sbjct: 1   MKHSGIILYFTII-TTLCLFIRYTGLCSSPLSCVSFSPTNNFNRIAVRRALSTHITEHVK 60

Query: 61  EAVKVLNATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP 119
           E VKV +  K SP + AYRREE VKSGI+GD+ EDEL+YHIDYHGVTTHP   PKHGKP
Sbjct: 61  EQVKVFHGMKHSPQEHAYRREELVKSGINGDDAEDELMYHIDYHGVTTHPSPTPKHGKP 118
[Close]
BLAST of Spo01514.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKU9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_054620 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.100e-60
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESE 60
           MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESE
Sbjct: 1   MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASFPTNNLHGRASRRALSTHLIQHESE 60

Query: 61  AVKVLNATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP 119
           AVKVL+ATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP
Sbjct: 61  AVKVLDATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP 118
[Close]
BLAST of Spo01514.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUS8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g190110 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.400e-34
Identity = 80/119 (67.23%), Postives = 90/119 (75.63%), Query Frame = 1 

		  

Query: 1   MKHSCLILYFIIIATTFCFFTKYTGLCSSPLFSASF-PTNNLHGRASRRALSTHLIQHES 60
           MKHS +ILYF II TT C F +YTGLCSSPL   SF PTNN +  A RRALSTH+ +H  
Sbjct: 1   MKHSGIILYFTII-TTLCLFIRYTGLCSSPLSCVSFSPTNNFNRIAVRRALSTHITEHVK 60

Query: 61  EAVKVLNATKRSPHQVAYRREEPVKSGIDGDEGEDELVYHIDYHGVTTHPGSNPKHGKP 119
           E VKV +  K SP + AYRREE VKSGI+GD+ EDEL+YHIDYHGVTTHP   PKHGKP
Sbjct: 61  EQVKVFHGMKHSPQEHAYRREELVKSGINGDDAEDELMYHIDYHGVTTHPSPTPKHGKP 118
The following BLAST results are available for this feature:
BLAST of Spo01514.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902225627|gb|KNA20131.1|1.6e-6099.1hypothetical protein SOVF_0546... [more]
gi|870851641|gb|KMT03673.1|2.0e-3467.2hypothetical protein BVRB_8g19... [more]
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BLAST of Spo01514.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RKU9_SPIOL1.1e-6099.1Uncharacterized protein OS=Spi... [more]
A0A0J8BUS8_BETVU1.4e-3467.2Uncharacterized protein OS=Bet... [more]
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BLAST of Spo01514.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01514.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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