Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAGGAGAACCAATTAAGACTAATTATTATTCACAAATTAACTATATCAATTAATTACTATTAATAATAATCATATTATTATTATGGGAAGATCTCCATGTTGTGATGAAATTGGGCTGAAGAAAGGGCCATGGACCCCAGAAGAAGATCAGAAGCTTATCAATTACATCCACAAACATGGCCATGGCAGTTGGAGAGCTCTTCCTAAACTTGCAGGTAACTATCCCTTAATTATCTTTAGCCGGATACTTAATTATCCCTTAATTATCTTAGCCGGATACTTAACTATCGATCCCTTAATCTTTTGGATAATTAACTATCCCTTGAGTGTTCGATCATATTGTTAAATTTTGTTTGGAACATTTCAGGTTTGAACAGATGTGGGAAAAGCTGTAGGTTAAGGTGGACAAATTATCTAAGGCCGGATATCAAAAGAGGCAAATTTACGCCCGAGGAAGAACAAACAATTCTTAACCTCCATGCTATCCTTGGTAACAAGTAAGCATACTCTTTATCTTGATTTACATAACGATACTAAAGCTTTGAAAAATGTGTCTGAAATTTGAAAACTTTGACGGTAAAATTCCGTTATTCATATATTAAAACATATCATGTGAGATCTTGCTAGAGTCGTATTAATATGGCCTGGTTTGGCAATTAGCGGTTAGGTGTAACATATCGGATTAATAGTTTTGTCTAACTGATTGAATTAGCAGTTTTGACTAGCTGATGAAAGTGTTTGGTAAATACGGAGGGCCTGTTAGGTGTTTGAGCATGTAAATGACAAATAAGCGAGATGAATTGAAATATTATACTGCTTAATTTTAAATTACTAATTATTAAAATGATAGATATATATTTAATTTGTTCCCATCCTCTAATTTCTTCCCAATCCTGAACAACCAAATGCGCACAGACTATGTATTTCAAGATATTAACATTTTTTTTAATTTTTTCTCATACGAAACTAGAATATTAACGTGTAAAAAACTTAATAAAACGTACTGTAGGTAGTATACTTTATAAATGAATTATAGGGAGTCTGATCCTAGCTATTCTTTTTTTAAATTTTTTTTTCTTTGCCTATCCATTAATTAATTACTAATTAACATAATAATATGAGCAGGTGGTCAGCAATTGCAAACCATCTACCAGGAAGAACAGACAATGAAATCAAGAATTTCTGGAACACACACTTGAAGAAGAAGCTAATTCAAATGGGTTTTGACCCGATGACCCACCGCCCTCGAACCGACATATTTTCAAGCTTGCCTCACCTCATAGCCTTAGCAAACCTCAAGGATTTAGTGGACAACAACAACAACTCTTGCTGGGAAGAACAACAATCAATTAGACTTCAAACTGAGGTTGCTAAACTTCAATACTTACAATATCTTCTTCAACCACCTAATAATTATCCCATGCCTAACCTAGACATGGACACCCTTAATCTTTTGAACTCCCTCCCCTCTGCATTTTCCACCAAGGATTATGGTGATTTGGATAGTCCAAACCCGTTCGATGGTATCCGTGATCACTTGCCGGGTCTAAAAACCCTAGAAACACCAGCTAATAATTTCGTAACAAGTGATAATCAAGTTCAAGATCAAGTTTGTGAATATACAGTTTTAAGCCATGGGGAGAATTCATCAACTTCTCCTTGGCTTCCTTCTTCTCCGTCACCACCGCCACCTCCGGTTACCACCATCGCTACCGCCACCGCCACCTCGGCCCAACAACTAGTAGATTGTTGCACCACCCCTACTACTACTTCTACTAGTGGCTTCTGGCCTGATCATCTCCTCCTTGACGACACCTTGTTTAACGATATTCCATAGTACGTAATTATTATTTAATTTGGTAAATTTTATAGAGTATTTATTTTTCATACATATATATGCTGAGTACTGTGAAAAATTAAGGGTTTGTACTATATTTGCACCGTACCCTTATAC TATAGGAGAACCAATTAAGACTAATTATTATTCACAAATTAACTATATCAATTAATTACTATTAATAATAATCATATTATTATTATGGGAAGATCTCCATGTTGTGATGAAATTGGGCTGAAGAAAGGGCCATGGACCCCAGAAGAAGATCAGAAGCTTATCAATTACATCCACAAACATGGCCATGGCAGTTGGAGAGCTCTTCCTAAACTTGCAGGTTTGAACAGATGTGGGAAAAGCTGTAGGTTAAGGTGGACAAATTATCTAAGGCCGGATATCAAAAGAGGCAAATTTACGCCCGAGGAAGAACAAACAATTCTTAACCTCCATGCTATCCTTGGTAACAAGTGGTCAGCAATTGCAAACCATCTACCAGGAAGAACAGACAATGAAATCAAGAATTTCTGGAACACACACTTGAAGAAGAAGCTAATTCAAATGGGTTTTGACCCGATGACCCACCGCCCTCGAACCGACATATTTTCAAGCTTGCCTCACCTCATAGCCTTAGCAAACCTCAAGGATTTAGTGGACAACAACAACAACTCTTGCTGGGAAGAACAACAATCAATTAGACTTCAAACTGAGGTTGCTAAACTTCAATACTTACAATATCTTCTTCAACCACCTAATAATTATCCCATGCCTAACCTAGACATGGACACCCTTAATCTTTTGAACTCCCTCCCCTCTGCATTTTCCACCAAGGATTATGGTGATTTGGATAGTCCAAACCCGTTCGATGGTATCCGTGATCACTTGCCGGGTCTAAAAACCCTAGAAACACCAGCTAATAATTTCGTAACAAGTGATAATCAAGTTCAAGATCAAGTTTGTGAATATACAGTTTTAAGCCATGGGGAGAATTCATCAACTTCTCCTTGGCTTCCTTCTTCTCCGTCACCACCGCCACCTCCGGTTACCACCATCGCTACCGCCACCGCCACCTCGGCCCAACAACTAGTAGATTGTTGCACCACCCCTACTACTACTTCTACTAGTGGCTTCTGGCCTGATCATCTCCTCCTTGACGACACCTTGTTTAACGATATTCCATAGTACGTAATTATTATTTAATTTGGTAAATTTTATAGAGTATTTATTTTTCATACATATATATGCTGAGTACTGTGAAAAATTAAGGGTTTGTACTATATTTGCACCGTACCCTTATAC ATGGGAAGATCTCCATGTTGTGATGAAATTGGGCTGAAGAAAGGGCCATGGACCCCAGAAGAAGATCAGAAGCTTATCAATTACATCCACAAACATGGCCATGGCAGTTGGAGAGCTCTTCCTAAACTTGCAGGTTTGAACAGATGTGGGAAAAGCTGTAGGTTAAGGTGGACAAATTATCTAAGGCCGGATATCAAAAGAGGCAAATTTACGCCCGAGGAAGAACAAACAATTCTTAACCTCCATGCTATCCTTGGTAACAAGTGGTCAGCAATTGCAAACCATCTACCAGGAAGAACAGACAATGAAATCAAGAATTTCTGGAACACACACTTGAAGAAGAAGCTAATTCAAATGGGTTTTGACCCGATGACCCACCGCCCTCGAACCGACATATTTTCAAGCTTGCCTCACCTCATAGCCTTAGCAAACCTCAAGGATTTAGTGGACAACAACAACAACTCTTGCTGGGAAGAACAACAATCAATTAGACTTCAAACTGAGGTTGCTAAACTTCAATACTTACAATATCTTCTTCAACCACCTAATAATTATCCCATGCCTAACCTAGACATGGACACCCTTAATCTTTTGAACTCCCTCCCCTCTGCATTTTCCACCAAGGATTATGGTGATTTGGATAGTCCAAACCCGTTCGATGGTATCCGTGATCACTTGCCGGGTCTAAAAACCCTAGAAACACCAGCTAATAATTTCGTAACAAGTGATAATCAAGTTCAAGATCAAGTTTGTGAATATACAGTTTTAAGCCATGGGGAGAATTCATCAACTTCTCCTTGGCTTCCTTCTTCTCCGTCACCACCGCCACCTCCGGTTACCACCATCGCTACCGCCACCGCCACCTCGGCCCAACAACTAGTAGATTGTTGCACCACCCCTACTACTACTTCTACTAGTGGCTTCTGGCCTGATCATCTCCTCCTTGACGACACCTTGTTTAACGATATTCCATAG MGRSPCCDEIGLKKGPWTPEEDQKLINYIHKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTPEEEQTILNLHAILGNKWSAIANHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDIFSSLPHLIALANLKDLVDNNNNSCWEEQQSIRLQTEVAKLQYLQYLLQPPNNYPMPNLDMDTLNLLNSLPSAFSTKDYGDLDSPNPFDGIRDHLPGLKTLETPANNFVTSDNQVQDQVCEYTVLSHGENSSTSPWLPSSPSPPPPPVTTIATATATSAQQLVDCCTTPTTTSTSGFWPDHLLLDDTLFNDIP Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo01756.1 vs. NCBI nr
Match: gi|731338847|ref|XP_010680536.1| (PREDICTED: transcription factor MYB39-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 513.5 bits (1321), Expect = 2.800e-142 Identity = 260/340 (76.47%), Postives = 281/340 (82.65%), Query Frame = 1
BLAST of Spo01756.1 vs. NCBI nr
Match: gi|902086752|gb|KNA03231.1| (hypothetical protein SOVF_211180 [Spinacia oleracea]) HSP 1 Score: 486.5 bits (1251), Expect = 3.600e-134 Identity = 234/238 (98.32%), Postives = 237/238 (99.58%), Query Frame = 1
BLAST of Spo01756.1 vs. NCBI nr
Match: gi|661894470|emb|CDP01469.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 389.8 bits (1000), Expect = 4.600e-105 Identity = 216/352 (61.36%), Postives = 249/352 (70.74%), Query Frame = 1
BLAST of Spo01756.1 vs. NCBI nr
Match: gi|595838213|ref|XP_007207610.1| (hypothetical protein PRUPE_ppa019923mg [Prunus persica]) HSP 1 Score: 383.3 bits (983), Expect = 4.300e-103 Identity = 207/346 (59.83%), Postives = 251/346 (72.54%), Query Frame = 1
BLAST of Spo01756.1 vs. NCBI nr
Match: gi|566170039|ref|XP_002307080.2| (hypothetical protein POPTR_0005s07590g [Populus trichocarpa]) HSP 1 Score: 381.3 bits (978), Expect = 1.600e-102 Identity = 212/347 (61.10%), Postives = 240/347 (69.16%), Query Frame = 1
BLAST of Spo01756.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C939_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g135030 PE=4 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 1.900e-142 Identity = 260/340 (76.47%), Postives = 281/340 (82.65%), Query Frame = 1
BLAST of Spo01756.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9P5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211180 PE=4 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 2.500e-134 Identity = 234/238 (98.32%), Postives = 237/238 (99.58%), Query Frame = 1
BLAST of Spo01756.1 vs. UniProtKB/TrEMBL
Match: A0A068TZV3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00036526001 PE=4 SV=1) HSP 1 Score: 389.8 bits (1000), Expect = 3.200e-105 Identity = 216/352 (61.36%), Postives = 249/352 (70.74%), Query Frame = 1
BLAST of Spo01756.1 vs. UniProtKB/TrEMBL
Match: M5W526_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019923mg PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 3.000e-103 Identity = 207/346 (59.83%), Postives = 251/346 (72.54%), Query Frame = 1
BLAST of Spo01756.1 vs. UniProtKB/TrEMBL
Match: B9H4T1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s07590g PE=4 SV=2) HSP 1 Score: 381.3 bits (978), Expect = 1.100e-102 Identity = 212/347 (61.10%), Postives = 240/347 (69.16%), Query Frame = 1
BLAST of Spo01756.1 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 3.000e-64 Identity = 131/258 (50.78%), Postives = 170/258 (65.89%), Query Frame = 1
BLAST of Spo01756.1 vs. ExPASy Swiss-Prot
Match: MYB51_ARATH (Transcription factor MYB51 OS=Arabidopsis thaliana GN=MYB51 PE=1 SV=2) HSP 1 Score: 217.2 bits (552), Expect = 2.600e-55 Identity = 95/141 (67.38%), Postives = 117/141 (82.98%), Query Frame = 1
BLAST of Spo01756.1 vs. ExPASy Swiss-Prot
Match: MYB34_ARATH (Transcription factor MYB34 OS=Arabidopsis thaliana GN=MYB34 PE=1 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.700e-54 Identity = 91/128 (71.09%), Postives = 106/128 (82.81%), Query Frame = 1
BLAST of Spo01756.1 vs. ExPASy Swiss-Prot
Match: MYB28_ARATH (Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 4.800e-54 Identity = 90/128 (70.31%), Postives = 105/128 (82.03%), Query Frame = 1
BLAST of Spo01756.1 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 4.800e-54 Identity = 89/127 (70.08%), Postives = 103/127 (81.10%), Query Frame = 1
BLAST of Spo01756.1 vs. TAIR (Arabidopsis)
Match: AT5G10280.1 (myb domain protein 92) HSP 1 Score: 328.2 bits (840), Expect = 5.800e-90 Identity = 186/338 (55.03%), Postives = 226/338 (66.86%), Query Frame = 1
BLAST of Spo01756.1 vs. TAIR (Arabidopsis)
Match: AT5G65230.1 (myb domain protein 53) HSP 1 Score: 325.9 bits (834), Expect = 2.900e-89 Identity = 186/330 (56.36%), Postives = 215/330 (65.15%), Query Frame = 1
BLAST of Spo01756.1 vs. TAIR (Arabidopsis)
Match: AT1G34670.1 (myb domain protein 93) HSP 1 Score: 308.9 bits (790), Expect = 3.700e-84 Identity = 152/215 (70.70%), Postives = 172/215 (80.00%), Query Frame = 1
BLAST of Spo01756.1 vs. TAIR (Arabidopsis)
Match: AT3G02940.1 (myb domain protein 107) HSP 1 Score: 286.6 bits (732), Expect = 1.900e-77 Identity = 134/188 (71.28%), Postives = 155/188 (82.45%), Query Frame = 1
BLAST of Spo01756.1 vs. TAIR (Arabidopsis)
Match: AT5G16770.1 (myb domain protein 9) HSP 1 Score: 276.9 bits (707), Expect = 1.500e-74 Identity = 139/226 (61.50%), Postives = 166/226 (73.45%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01756.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01756.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01756.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01756.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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