Spo01809.1 (mRNA)

Overview
NameSpo01809.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 27029570 .. 27031034 (-)
Sequence length949
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGGTACACCAATTCTTATCTGTCACCTCCCTTGGAATTTTCTCGTCCATTAAAAAACCCAACTAAAATATCAACAACCGACTTAAATACGTTGGCAACCATCTCACCGTCCAATCGGCATCTATAATTCTAATCTCAGCCGTTGATTCTATCCTCGACTTTCAATAAAGTCTCTCCCCTCTGCCGTTCATATCCCTCATTCATTCATCCTCTATCTCTTCAATATTCCCTCTTCTCTGTAAAACTCTGAATTTCTCAGATCTACGTTTCCGAGCTCGGAATTATGGATTTCTTTCATTCGATTCGAACAAATCGTTCGACGATCTATCATTCGACGTCGATTTCTTCGTTGTTCATCGGTGGATGATGTCTCAAATTTGATCAATCTGCTAATTTCAAGCGGAGATGCTGTTTGATCTGTGTTCTTCCGTCAACAGAGGGGAACCGTGGAGATCTTATGGATACGAGAACGGATTAATGATTTTATTTGGTGAGTATTCAGATCTGAGTAATTTTATTCATAGATCTATGTCCACGTACTTATAATTCATAGATCTTTGTGTTGTCTATTTTTGCGTTATCGTGGTATTGAAATCAATCAATTTGTGTAAGAGTCTTATATGTCTTGCTTCGATTATTTGTTGATCTGATCTGATAGCGTGAATTCATTACGTTCTGCGGTCTCTTTTCATTAGATTGTTAGATTGAAGGACATTTTTACGTTATTTTAGATTTTTAAATCGGACTTTCTTGGTAACAATTTAGCTAGTCAGATGCGAATTTATTTTGTCTGATCAGTTAATTGATCCTGATTCATGTCATCTAATTATATCTCAATTCATTTATCAGAATTGATGGTTCCCGGTTGAAGGTTTCGCATTATGTAGCCATCTGTTAACTGGAGATTTCGTCGAATTGTTACCTTTCATTTGACCGAGGTTCTATGAAGCAAAAGTGGGATATGCAAGTGGATGTGGATCTACCCTTGTTGAAGCGACACAAACATGGTGCTTGTATAAAATTTGGAAAGTGATGTTAATTAGATTTGAATCTGGTAGGATTCATTTCTGTGTGCGAGGTGAGCGGAAAAAAATGTGAGTGAAAGTATCGGACCTTTGCCATGTCGGGTGCGCTTGCTTGGCAGGTCAACCTACTTAATAAAAAAGAAACGTTTTTGTGTTTGTAGGGGAAGTAGGCACGGGGGTTTTTGCCCGGCTCTTCCCCTCTGTGTGTGCTTGCGTCTCTTTTCCCTCCTCACCCTCTCTCCCCCTCTTTCTACGCCCGTTTCGATTATTAGACATTCGCTCATTCACAGCTCTGGCTTATCATCATACGCTTCAATCGACTTCCTCCAGCATTCGGAACAACGTTTTGCAAGGTATATTCTTATCGCTAATACTCCGTTTCAATTTCAATTTGCAGTTGATTCATCATATTAACATGTTGTCCTTTAATTTACACTAA

mRNA sequence

GACGGTACACCAATTCTTATCTGTCACCTCCCTTGGAATTTTCTCGTCCATTAAAAAACCCAACTAAAATATCAACAACCGACTTAAATACGTTGGCAACCATCTCACCGTCCAATCGGCATCTATAATTCTAATCTCAGCCGTTGATTCTATCCTCGACTTTCAATAAAGTCTCTCCCCTCTGCCGTTCATATCCCTCATTCATTCATCCTCTATCTCTTCAATATTCCCTCTTCTCTGTAAAACTCTGAATTTCTCAGATCTACGTTTCCGAGCTCGGAATTATGGATTTCTTTCATTCGATTCGAACAAATCGTTCGACGATCTATCATTCGACGTCGATTTCTTCGTTGTTCATCGGTGGATGATGTCTCAAATTTGATCAATCTGCTAATTTCAAGCGGAGATGCTGTTTGATCTGTGTTCTTCCGTCAACAGAGGGGAACCGTGGAGATCTTATGGATACGAGAACGGATTAATGATTTTATTTGAATTGATGGTTCCCGCAAAAGTGGGATATGCAAGTGGATGTGGATCTACCCTTGTTGAAGCGACACAAACATGGTGCTTGTATAAAATTTGGAAAGTGATGTTAATTAGATTTGAATCTGGTAGGATTCATTTCTGTGTGCGAGGTGAGCGGAAAAAAATAAACGTTTTTGTGTTTGTAGGGGAAGTAGGCACGGGGGTTTTTGCCCGGCTCTTCCCCTCTGTGTGTGCTTGCGTCTCTTTTCCCTCCTCACCCTCTCTCCCCCTCTTTCTACGCCCGTTTCGATTATTAGACATTCGCTCATTCACAGCTCTGGCTTATCATCATACGCTTCAATCGACTTCCTCCAGCATTCGGAACAACGTTTTGCAAGGTATATTCTTATCGCTAATACTCCGTTTCAATTTCAATTTGCAGTTGATTCATCATATTAACATGTTGTCCTTTAATTTACACTAA

Coding sequence (CDS)

ATGCTGTTTGATCTGTGTTCTTCCGTCAACAGAGGGGAACCGTGGAGATCTTATGGATACGAGAACGGATTAATGATTTTATTTGAATTGATGGTTCCCGCAAAAGTGGGATATGCAAGTGGATGTGGATCTACCCTTGTTGAAGCGACACAAACATGGTGCTTGTATAAAATTTGGAAAGTGATGTTAATTAGATTTGAATCTGGTAGGATTCATTTCTGTGTGCGAGGTGAGCGGAAAAAAATAAACGTTTTTGTGTTTGTAGGGGAAGTAGGCACGGGGGTTTTTGCCCGGCTCTTCCCCTCTGTGTGTGCTTGCGTCTCTTTTCCCTCCTCACCCTCTCTCCCCCTCTTTCTACGCCCGTTTCGATTATTAGACATTCGCTCATTCACAGCTCTGGCTTATCATCATACGCTTCAATCGACTTCCTCCAGCATTCGGAACAACGTTTTGCAAGGTATATTCTTATCGCTAATACTCCGTTTCAATTTCAATTTGCAGTTGATTCATCATATTAACATGTTGTCCTTTAATTTACACTAA

Protein sequence

MLFDLCSSVNRGEPWRSYGYENGLMILFELMVPAKVGYASGCGSTLVEATQTWCLYKIWKVMLIRFESGRIHFCVRGERKKINVFVFVGEVGTGVFARLFPSVCACVSFPSSPSLPLFLRPFRLLDIRSFTALAYHHTLQSTSSSIRNNVLQGIFLSLILRFNFNLQLIHHINMLSFNLH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo01809Spo01809gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo01809.1Spo01809.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01809.1.utr5p.1Spo01809.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01809.1.CDS.4Spo01809.1.CDS.4CDS
Spo01809.1.CDS.3Spo01809.1.CDS.3CDS
Spo01809.1.CDS.2Spo01809.1.CDS.2CDS
Spo01809.1.CDS.1Spo01809.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo01809.1.exon.4Spo01809.1.exon.4exon
Spo01809.1.exon.3Spo01809.1.exon.3exon
Spo01809.1.exon.2Spo01809.1.exon.2exon
Spo01809.1.exon.1Spo01809.1.exon.1exon


Homology
[Close]
BLAST of Spo01809.1 vs. NCBI nr
Match: gi|902202354|gb|KNA14249.1| (hypothetical protein SOVF_109160 [Spinacia oleracea])

HSP 1 Score: 74.3 bits (181), Expect = 2.400e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 1  MLFDLCSSVNRGEPWRSYGYENGLMILFELMVP 34
          MLFDLCSSVN GEPWRSYGYENGLMILFELMVP
Sbjct: 1  MLFDLCSSVNGGEPWRSYGYENGLMILFELMVP 33
[Close]
BLAST of Spo01809.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5N4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109160 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.700e-10
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 1  MLFDLCSSVNRGEPWRSYGYENGLMILFELMVP 34
          MLFDLCSSVN GEPWRSYGYENGLMILFELMVP
Sbjct: 1  MLFDLCSSVNGGEPWRSYGYENGLMILFELMVP 33
The following BLAST results are available for this feature:
BLAST of Spo01809.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902202354|gb|KNA14249.1|2.4e-1096.9hypothetical protein SOVF_1091... [more]
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BLAST of Spo01809.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R5N4_SPIOL1.7e-1096.9Uncharacterized protein OS=Spi... [more]
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BLAST of Spo01809.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01809.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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