Spo02148.1 (mRNA)

Overview
NameSpo02148.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 4532240 .. 4535525 (-)
Sequence length339
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTTAATAAGACTGTTAGTGTGAATATTCCCTGTCCTCCTCTGTGGAATCGGGAAAGATTGGTTGCGCACAAGGAGAAGCTCTGGTTAGTAGTTTGGCCGTATAATGATAATGATTCTTTGGTGAAGAAGATTCAATTTACGGTTTACTGTCTGGGAGGATTGTATAGTAGATTGTTGATGCAAACAAGTTTGGGAGTTTGGTCACTTTTTGTTGGGTTGGTCTACATTCGTGCTTTATTGTTTGTGCCCGAGAACTAACTATGTTTGAGTATACACCTCAAAGGGAGCGAACAGTGACTCGTTCCTATTTAGGACGGCTTTCCCCTCTTCAGTAAACGAGTTCAATTGGTGTGTGGTGAAATGGGATTACCTGTTTACTGTTAAAGTTGTTTCTATTTCTCTGCTGTGCCTCTGATGTTCAACCTTCAACTGTTTGAAGAAGCAAGTGAATATCTTCCTATTGGTGTCTTTTATTTTAGAAGGGAGGAATGGAGGATAGAGATAGGATAGGATCACTCTGTGGTGCCGCTGCTGGAGTACTATGGTCTATGGCCGCCCCCTACCTGGTTCTTGCCAGATACTTACACTTCAAGAAGGTAACGTTAAATGTAGATTCTCAATGTTAATTTGATTTTCTTGTGATTTGCTTACATCTCAATGAAGACTTTACATTACGTATTTTACTTGCATATTACCTTGATACTAAACCTTCTTGTCTAGTACATTATACTAATCTACACTTCTGCTGCTGAAATAGAAGGTTCTGATTGATGTCCAATGCCCTAGTAATTTTGATAGAAGTTTCCTAATTTAGAGATAGTTTGAAACTGTTGTATGAAAATGTAGGCTATTTTTGATGCATTAATCTTTGACACGATCTTAGGTCTAAATGGTGCTGTAATTAAGTTGCTATACCTCATGTTGTATAGCGACTCAGCTCATTTATATAAGTTATTCTGGAGGAGAAAGACCTCTTATGAGAAATTAATATATGAGGTGATAGTCTATTTTAAGAAGCGAATTCCGGTTAGCTTTCATTCTTTTTGGGGAGTTCTACAAAGTGTATAAGTGGGAGGGACACTTACTCAGGTCTCAGCTTTTTGTTGGTTAAAGGGAGAGGCAAAAATGGGATCACAGCCTTCACTAAAAAAGCATGCAATATCATTGTTTCTTTGTAGCAGGGATGGGATATTGGGGAAAGTGAGGTTTTAATAGCACTGCTATGGCACTCACTCCTTGTAGAGTTGTAGACTATTATTTGGCCTCCTCGCTTCAGCCCTCACCCGAGTCACCCCAAAAAGGTGGGAACTGACATTTATTCTTCTTTACCCTTTTTCCAGCCTTCTCGTGTATTCCTATGTGGTATTTCTTATTGGGAAACTACTCTCCTACTTTAACTGAACATCCATGTTAAGTGGCATTGAGCATTTCTCCAAACAAAAATGTTATTGAGTAAAAGGAAAACTCCTTAGTCCTTACAGTTTTATGAAGGGCAGTGACTCCTAATTTTTTTTTTGGCAAATTTGCCAAAAAGGACCTTTTATAACTCAAATTTTGCGAGAAAGGACCTTATATAATTTTTTTTGTGAAAACACACCTTAAAGTTTTTTTTTTTTGCGAGAAAGGACCTAAGGAAAGTTTCCGGCATTGACTGAGCTTTTCCGGCCATTAACTTGCACGTGAGCAGCACGTGTGGCTTACGTTGGCTAAAGACACTGATTTTCCCGACTCTTGAATTTTCAAACTTGATTTTATTTCGGTTTTTTTTTTCAACTTTAGTTTTAAAGCTTAGAATTTTGGAGGAAAATTGGGTGTGATTAGCAAAATAAAGCCACACGTGCTTCTCACGTGTAAGTCAATAGCCAAAAAAGCTCAGTCAATGCCGGAAATTTACTTTTGGTTGTCTTTCGCAAAAAGAAATTATATTAATGTGTGATTTGACAAAAAAAAAATTATATAAGGTCCTTTCTCGCAAAAATTTTTACATTAAGGTGTTTTTTGACAAAAAAAGTTATATAAGGTCCTTTCTCGCAAAATTTGGATTATAAAAGGTCCTTTTTAACAAATTTGCCTTTTTTTTTCTATTTGTTTGTGAAGGGATGATGATGAGAATGAAAGATTTGATTCCTGGTACCTAGATGTTTCAACTGAGAAGGTGGAATTGCCTTCATCTTTGATTGTCACCTCTTCTATTGAACTTGCTAATATTAATGATTAATGAGTATGGTAATCTTTTTTATGATTTCAATATTAGATGTTTTTCTTTGCTTGTATTTCAATCTTTTAACGAATATCTGTTTCCGGTTGTTCAGTTAGTACCAAAGGGATAAATTTTCACACTGCTATTGTGGATTCTCATGCTTTGAGAACTCAGTATTTTTAAGAATTCTGATGATACCACTATTTGTTGGGTTCTGTTTCTAATTGGCCTCATTTTTGCGTTTGAACCTTTGTGCTTCAACATAAAAGTTTGAAGGAATAAATATCAAGTCCACCCTTGTACTCACTTGCAAATATCTGGGATAAACATAGGAATATTCTCGAAGGGAGTACAATACGCAGTGGTGACTTGATAGCTTGGGCCTTAGAGTCACTAGCAACAACATTCCTTATCCTCCAGAGTAGCTCAGGAAAATCCTTGAATGAAAACCAAGTTGCCTGACCTTCAAAACATGCATTTCAATATGCACTGGTTGGCACCGTTTGTTGAAAAAGCTTGGCTGTTCACAAAACCAAACCACTTTTTGATTCTCTGAAGAAGTTTGGTGAGGCCAAAGCCCGTGCTGAAAAAATGAAACTGAAGACATGAAATCTGTTCTTGAAATAATCCCTAGTTTGGAATCTGTTGATCTTAACCAAAGTTTAGGAGAGGGAATTTGTTTTCTTAATAAAACTGGATGAAGTGGAGGAAGACATGAAGTCTGTTTTTGACATAATCCCTACTTTGGAATCTGTTGATCTTAACAAAAGTTTAGGACAGGGGATTTGTTAACTTATTGATGACATTTTCTGCATTCTGGAGCTGGACTTATGAGCATTTTCTCGTCTATGTTTAACACCTGTAAGTACGTTTTTCATTGATATTTTCATGTATGCCATAAGTACGTTTTTTATGAATTAATGGTGTAGAAATGATGCACTTAGAATCCATGTGTGGAGAACCTTGAGAGGAAAGTATTCTAACTTGTACTCCATTGGTATGCAGGGAATTACGAGTACTAGAAATTTAGAAAAGAGCTGCGGAGGATACCTGTATCTTGTGGGGAGGGATCGAAGTTGA

mRNA sequence

ATGAAGGTTAATAAGACTGTTAGTGTGAATATTCCCTGTCCTCCTCTGTGGAATCGGGAAAGATTGGTTGCGCACAAGGAGAAGCTCTGGTTAGTAGTTTGGCCGTATAATGATAATGATTCTTTGGTGAAGAAGATTCAATTTACGAAGGGAGGAATGGAGGATAGAGATAGGATAGGATCACTCTGTGGTGCCGCTGCTGGAGTACTATGGTCTATGGCCGCCCCCTACCTGGTTCTTGCCAGATACTTACACTTCAAGAAGGGAATTACGAGTACTAGAAATTTAGAAAAGAGCTGCGGAGGATACCTGTATCTTGTGGGGAGGGATCGAAGTTGA

Coding sequence (CDS)

ATGAAGGTTAATAAGACTGTTAGTGTGAATATTCCCTGTCCTCCTCTGTGGAATCGGGAAAGATTGGTTGCGCACAAGGAGAAGCTCTGGTTAGTAGTTTGGCCGTATAATGATAATGATTCTTTGGTGAAGAAGATTCAATTTACGAAGGGAGGAATGGAGGATAGAGATAGGATAGGATCACTCTGTGGTGCCGCTGCTGGAGTACTATGGTCTATGGCCGCCCCCTACCTGGTTCTTGCCAGATACTTACACTTCAAGAAGGGAATTACGAGTACTAGAAATTTAGAAAAGAGCTGCGGAGGATACCTGTATCTTGTGGGGAGGGATCGAAGTTGA

Protein sequence

MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFTKGGMEDRDRIGSLCGAAAGVLWSMAAPYLVLARYLHFKKGITSTRNLEKSCGGYLYLVGRDRS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo02148Spo02148gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo02148.1Spo02148.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02148.1.CDS.3Spo02148.1.CDS.3CDS
Spo02148.1.CDS.2Spo02148.1.CDS.2CDS
Spo02148.1.CDS.1Spo02148.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02148.1.exon.3Spo02148.1.exon.3exon
Spo02148.1.exon.2Spo02148.1.exon.2exon
Spo02148.1.exon.1Spo02148.1.exon.1exon


Homology
[Close]
BLAST of Spo02148.1 vs. NCBI nr
Match: gi|902166360|gb|KNA07216.1| (hypothetical protein SOVF_173900 [Spinacia oleracea])

HSP 1 Score: 111.3 bits (277), Expect = 1.100e-21
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1 

		  

Query: 1  MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFT---KGGMEDR 57
          MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFT    GG+  R
Sbjct: 1  MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFTVYCLGGLYSR 59
[Close]
BLAST of Spo02148.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_173900 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.600e-22
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 1 

		  

Query: 1  MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFT---KGGMEDR 57
          MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFT    GG+  R
Sbjct: 1  MKVNKTVSVNIPCPPLWNRERLVAHKEKLWLVVWPYNDNDSLVKKIQFTVYCLGGLYSR 59
The following BLAST results are available for this feature:
BLAST of Spo02148.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902166360|gb|KNA07216.1|1.1e-2188.1hypothetical protein SOVF_1739... [more]
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BLAST of Spo02148.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QKW6_SPIOL7.6e-2288.1Uncharacterized protein OS=Spi... [more]
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BLAST of Spo02148.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02148.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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