Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATAACCTATAGTTCAACTAACCCTTCGAACAAAATATTGGTTTGGCCACCAAAACTTAACTGCATTATGTTGTCCACTTCCATCTAAAATCCTATAAAACCATCCCTCTCTTTTATCAAAATAATCAAATTAAAACAATTAATTAATTAATTCTCAATTTCCCTCCAATAATTCTTAATTAATTACCTTCTTGTAATGGCTTTTAGAGGATCTAAAGCATGTTTAGTACTCCTAATCCTAGCAATGGCATCAACATGGAATGGAGTAAAAGCACAATCAGGAACCAACAGTTGCACAACTGTGCTACTAACAATGGCTTCTTGCCTTAACTTCATCACCGGAAACTCCTCTTCGCCGGCGTCTTCATGTTGCTCCGCCCTTTCCAGCGTTGTTCAATCACAGCCTCAGTGCCTTTGCGCCGCTCTGAACAGTGGTGCCGCCGCCTCGTTGGGTGTTGCGATTAACCAAACTCGAGCTCTAGGCCTCCCTAATGCTTGTAATGTGCAAACTCCGTCTGTTAGTCAATGCAACACTTCTGGTAAGCTTTAAGTCTAATAACTAGATTACGTCCCGTGTATGCATGAATATTTCAAATTATTTGACTAATTTTTTATAATATATTTTACTTGAGTATTTCTCTAGCTGGAGTTACAGGATAATTAATAAATCTTTAACGTACTCATTTAATCATCTACCCCGTAATATGGAGTGTGTTATTTCCGTCCTACTACATATTACATGAAGTATTTCATAAGCTTATATGCTAATTTGATCAAAATATTTGACGTTTTAATATATTGATTTTGACCGATTTTTAATATGTTGAAATGGAAGGGAAACAAATAAAAAGTGGAAAGGGTGGCGTTAGTTATTACCAATATTAGTTATTTGGTATACCTTATTGTTAAGAACATAGGGTTATGATAAGTCGCAAGTTACGACAACATTTAATTTAGTTGTCGCAATCTTACGTGTCAAAGTTTAATTGGTACATATAGGTGTCACGTAGTTTATGCGTCATCAGAATATTTTTACTATCAATAAAAATATTTTTCCTATGAAAATATGTAAACAATGTAGTAGATATAAAGAATGAAACAAATTAGAATATTAAGATTTTCCTAGCTTTTTTTGAAACATGTATAATAGGTATAAGTTAAACATTTTAGTTTCCAATTTAAATCACGACACATAAACATGTCACGTCATCATTGTGACACAGCTTAAAGATCGAATGTTGCGACCTTTATCATTTTCGGGCAAAGTGTATGGAAGTCCAATACAGATCAGTACACAATCCTATTATCAGTATTGAATTGCGCTGTTTTTTCTATGCAGGATCAGGTGGTCCTTCAACTTCAGGTGCAGCTCCAGTTGCAGACTCTCCAGCAGGAGTACCAGATGAAGAACCTGCTCAAGGTCCATCATCCAATTTCCCCTCAGGTACTCTATGTAAATATATAGTATACAGTTAGGCTCAGTTCTGTTCTACTTAATTTTGACTTATTTCAGATAAAATAAGTTCAGTTAAGATAAGTTCAGAAAAAATAAGTATTTTTTCATATATTTTCACACACGAATATGTTTGTTTCAGACAAAATAAGTTTATTTTTCAGATAAAATAAATTCAGACATAATAACTCGAATAGAACATAGTCTAAACTGTAATTAATTTGTATTTTGGAAATCCAAAAAATACGAATTAATGCAAGTTCTTTAATTGATGCAGGATCTGGATCCAAGACTACACCATCTACTGAAGAATCAAATGGAAGCACAATTAAATCTTCCCTTCATCTGCTGGCTTTTATATTCTCAATTGTGTCTTGTACTTCAGCTTTAGCCATGTTTTGAGTAATTTTGTAGCATCCTTTGGCTTCTTGTTAATTTGTTATAGGGATGTTTATATATTTTGTATGTGATTGTAATTTATTTTTCCATTAGTCAATGATTGTAGAATGACTTTTGGAACCATTTTGGGCTTCCTTGTCTTTGGATTAGTGGAGCAGTTTGTGTTATATTGTTTGGTTGATTGAATTTAATAAAAATTGTTCGGTATTGCTTATAGTTTTTAGTTTTTGTTTTATAATTTAGAAAGTTATACTCCCTCCGTCCCAAAATTATAGTCTTGTTTGACTAAAAATACGGATTTTAAAAAAAGTGGAATTGAGTGGGTGGAAAATTGAAATATAGTACATTGATGATGAAAAAGTATAATATAGTACATGTAAAAAATAATAAAGTACATGGAGAAGAGAAAATAGTACATGTTAAAAGGAATAAAGTGCATTTTCTTTTTGTTTTGTGGTCCCAAATGAGGGTAACATGGGGAATTTTTTGTGTTTAAATAAGAAAACATGACTATAATTATGGGACGCTCGATTTGGAAAACATGACTATAATTTTAGGACGGAGGGAGTATGATTTAGATTGAATCATAAATCAAAAAGTACTTAGTTGTCGATTATGTTGATTTTGAAAACTGACAACAACAAAAAGCTCAAAACTTTTTTTCCTAGTTTTCATATTTGATTTCTAGGCATCTCTATCGATCTTCTACCCAAAAAAATGTGTGCATAATTATCAATGTCTTCCTCCTACGTACATTTTAGGGCCCGTTCGATATCAATTTAAATTGTTATTTTTTTGGTTTTGTAGTTTGACAGTCATATGACCTATATTAAATCATAAACCAAAAAATAACTATACTGATAGTTATCTTGTTGATTTTGAAAACCGACAACAACAAACACAAAATTACTTTTTTTTTCTCTGGGTTTCATATTTTCATTTCAAGGTGTCTCTGTAAATCTTCTACCAATAAAAAGTGTACATAATTATCAATCTCTTCCTCCTACATTTTACATGTAATTCCCCTTTCGGCACTAAAATAGTAAAATATACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACTTCTATTAACCCACCTACCCCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCTACTCTCCCCCAACCCCACCTCTTAACCCACCTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTTAATAAGTCAATTCAAGTTTCTTAAACTCTGTGCCGGTTAAACCGGGTCGAGTATTACGGGACGGAGGGAGTACTATCTAATATAATAATCCTTGTTTGATTAAGGTCATAAGGAGCGAGGCTATTAGTTAGCCCACATACACCATGTCATAATGTCCTCCTTAGCCATGATGGATTATTGTTCATGTTAGTATAAAATAGCAATTAGCCCCCTTCTACTATTAAGTCTAGCTTCGTTTCAAACTGTCATATTTTATAGACTTGAGTAAAAATCAAGAAATCGTTAACACATAACTTCAATTTGTTGTCATTTTACTTATTTTTATAAAAATAACATACTTCCCTACATGTCTAGACCAGAGTTACCTGATTCGCTAGCTAGTATGAAATTGGATACAATGTCACAATTCGCTGGAAAATTAACTAAACATACACCCTAAACCTAATTAATTAACTCCCTTGCATGTCTAAAATTAGAAGCATAAATCAATTTTAACTTCTCTTTTAAAAGCATCATCCTCCCTACAAAACCTCAACTCCATTACATTCCCAAACGTCCAAATTTCCCAACTATGGCGGGATCATCAAAACATACAAATTAACCAACAAATATCACAACACCTTTTGTTGTTTCCGTTATTATTATTACTATTTCAACACCAAATAATAATAAAAATGGCATCATCACAACTCCCGGTGGTGGTGGGGGTGGTGGTGCTAGTGGCGGTGCTAGTACTCACACNTAGTACTCACACCCGCCGTGTCAGGTGATGCCGTTACTGATGAAGAGGGTTGCAGAACCGAACTAGCGACCTTATCACCGTGTCTAAGCTACTTAACGGGGAAGATTTCCACACCGTCCCCAACGTGTTGCTTTCAACTAAAAGCTATCGTTGAAACAGAACCATGGTGTCTTTGTTATGGAATCATCGGTCAAGATAACGTTATATTTGGATTACCTCCAAACACACCGGTTAATCAAACAAGGGCTTTAACTCTTTCGAATGTCTGTGATATTCAAGGTATTCCGCCTGTTGCCGGTTGCAAAGAAGTACTGCCACCGGGAACGGCTATTCCTCAACTGCCTGCGGGGGCGGGTCAAGCCGGGTCATCAGCTGATGGGGTTGCTTCCGACGGTACGTATGTATTACTCCTTTGCGAGAGACAACCTGAGACCACTTTTCGGTATCGATGACTTGACCCATGGCCTGACTTTTAACTTTTGACTTTTCTCACCTTTTTTCCTCCAAAATTCTTAACTATGAAAGCTTAAAAAAACAAAAAAACAAAACAAAAAAAAAATCAAAAGTCAATGTTGGAAAGTGGGTGAACATAGACAACTTTGACAACACGTGGGACCTGCACGTGATGGTCAAAGGCCGAAAAATCATAGTCAATGCCGGAAAATGGGAACAGGTTGTCTCTCGCAAATAATTTTTAATTTAAGGTTTGATTTCACACAAAAATGATTTATAAGGGTCTTTCTCGCAAATAATTTTTACGGAGTACTTTAAGGTCTGACTTCACGTCTTCACCCAAAAAAATTTATAAGGGTCTTTCTCGCAAATTTTGAGCTATAAAGCCAATTAATTATCTTATAAAAAATGTATGTTATAAGATACTACCTTTGGCTGGATTTTGAACGTAAAATCAAAATTCCAGGGTTGATTTTACTATGTGTATCTCACGTTGTATTTCACGGAAAGGAAAAACTAAATGGTGCCTAAGAATAGATGTATATCGTAAAGTAAACCCCGGAATTTAAGTCAACAACGTTCATATATAATTCGGCAAAAGGTAGTATAGTACATTACAAAATGATTTTTTTATAAAATGTAGTTAATTACAATATTTTTTACAAAATAGTTTCTACATAAACATGTTTTATAAGGTAGTTTTTGACAAATTTGCCTAACTTAAAAAAGATATATGAGCGTGAGATGGTAAACGAACAAATTAATTGAAGAACTTGAACACCGGTAAGAGAGATCGACGGGTAGGATAAGGATTATTAAAGCTATAACTAGTTTATATTCCGTGTTATGTGCGATGCATGAGTCTCTTAATTTGAAGGTTAGGTTTTGTTGATTAAGCTATATAGGGGAGGAACAAAAACAAAATTGAAACAATAAAATATGATGCGTTTAGAGTATAATGAAATTGGAATTAGAATGTGAAACAAATAAATTAATTTCAAAGGGAAAAAAATATCTAATTAAGGCGTATAGATCAAGTACCTTCAATTATTTGTCTATATTGCTACGCTATTTTTGCTTAAAATGCATGTCAAATAGACGTATTTAAAAACAAGATGTGCATTTTGACATTTTTTCGAACATAATTTAATGACAAAATCCGTTACTAATTTATAAATATTTACATGAATGCAGATTATGGAGGACCTAAATCGAGTTCATCTAATAATGGAAACATGACGAAAATTCCAATTCTTATGACCCTCTTCCTTCTCTTCGTCACTTCAAGTGTTTATGCTATCATTATGTTGTAA TATAACCTATAGTTCAACTAACCCTTCGAACAAAATATTGGTTTGGCCACCAAAACTTAACTGCATTATGTTGTCCACTTCCATCTAAAATCCTATAAAACCATCCCTCTCTTTTATCAAAATAATCAAATTAAAACAATTAATTAATTAATTCTCAATTTCCCTCCAATAATTCTTAATTAATTACCTTCTTGTAATGGCTTTTAGAGGATCTAAAGCATGTTTAGTACTCCTAATCCTAGCAATGGCATCAACATGGAATGGAGTAAAAGCACAATCAGGAACCAACAGTTGCACAACTGTGCTACTAACAATGGCTTCTTGCCTTAACTTCATCACCGGAAACTCCTCTTCGCCGGCGTCTTCATGTTGCTCCGCCCTTTCCAGCGTTGTTCAATCACAGCCTCAGTGCCTTTGCGCCGCTCTGAACAGTGGTGCCGCCGCCTCGTTGGGTGTTGCGATTAACCAAACTCGAGCTCTAGGCCTCCCTAATGCTTGTAATGTGCAAACTCCGTCTGTTAGTCAATGCAACACTTCTGGATCAGGTGGTCCTTCAACTTCAGGTGCAGCTCCAGTTGCAGACTCTCCAGCAGGAGTACCAGATGAAGAACCTGCTCAAGGTCCATCATCCAATTTCCCCTCAGGATCTGGATCCAAGACTACACCATCTACTGAAGAATCAAATGGAAGCACAATTAAATCTTCCCTTCATCTGCTGGCTTTTATATTCTCAATTGTGTCTTGTATTCCGCCTGTTGCCGGTTGCAAAGAAGTACTGCCACCGGGAACGGCTATTCCTCAACTGCCTGCGGGGGCGGGTCAAGCCGGGTCATCAGCTGATGGGGTTGCTTCCGACGATTATGGAGGACCTAAATCGAGTTCATCTAATAATGGAAACATGACGAAAATTCCAATTCTTATGACCCTCTTCCTTCTCTTCGTCACTTCAAGTGTTTATGCTATCATTATGTTGTAA ATGGCTTTTAGAGGATCTAAAGCATGTTTAGTACTCCTAATCCTAGCAATGGCATCAACATGGAATGGAGTAAAAGCACAATCAGGAACCAACAGTTGCACAACTGTGCTACTAACAATGGCTTCTTGCCTTAACTTCATCACCGGAAACTCCTCTTCGCCGGCGTCTTCATGTTGCTCCGCCCTTTCCAGCGTTGTTCAATCACAGCCTCAGTGCCTTTGCGCCGCTCTGAACAGTGGTGCCGCCGCCTCGTTGGGTGTTGCGATTAACCAAACTCGAGCTCTAGGCCTCCCTAATGCTTGTAATGTGCAAACTCCGTCTGTTAGTCAATGCAACACTTCTGGATCAGGTGGTCCTTCAACTTCAGGTGCAGCTCCAGTTGCAGACTCTCCAGCAGGAGTACCAGATGAAGAACCTGCTCAAGGTCCATCATCCAATTTCCCCTCAGGATCTGGATCCAAGACTACACCATCTACTGAAGAATCAAATGGAAGCACAATTAAATCTTCCCTTCATCTGCTGGCTTTTATATTCTCAATTGTGTCTTGTATTCCGCCTGTTGCCGGTTGCAAAGAAGTACTGCCACCGGGAACGGCTATTCCTCAACTGCCTGCGGGGGCGGGTCAAGCCGGGTCATCAGCTGATGGGGTTGCTTCCGACGATTATGGAGGACCTAAATCGAGTTCATCTAATAATGGAAACATGACGAAAATTCCAATTCTTATGACCCTCTTCCTTCTCTTCGTCACTTCAAGTGTTTATGCTATCATTATGTTGTAA MAFRGSKACLVLLILAMASTWNGVKAQSGTNSCTTVLLTMASCLNFITGNSSSPASSCCSALSSVVQSQPQCLCAALNSGAAASLGVAINQTRALGLPNACNVQTPSVSQCNTSGSGGPSTSGAAPVADSPAGVPDEEPAQGPSSNFPSGSGSKTTPSTEESNGSTIKSSLHLLAFIFSIVSCIPPVAGCKEVLPPGTAIPQLPAGAGQAGSSADGVASDDYGGPKSSSSNNGNMTKIPILMTLFLLFVTSSVYAIIML Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo02338.1 vs. NCBI nr
Match: gi|902235097|gb|KNA23761.1| (hypothetical protein SOVF_022250 [Spinacia oleracea]) HSP 1 Score: 309.7 bits (792), Expect = 4.900e-81 Identity = 168/172 (97.67%), Postives = 169/172 (98.26%), Query Frame = 1
BLAST of Spo02338.1 vs. NCBI nr
Match: gi|731336097|ref|XP_010679074.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 270.8 bits (691), Expect = 2.500e-69 Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 1
BLAST of Spo02338.1 vs. NCBI nr
Match: gi|985450658|ref|XP_015386252.1| (PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Citrus sinensis]) HSP 1 Score: 157.1 bits (396), Expect = 4.000e-35 Identity = 100/185 (54.05%), Postives = 129/185 (69.73%), Query Frame = 1
BLAST of Spo02338.1 vs. NCBI nr
Match: gi|641849806|gb|KDO68680.1| (hypothetical protein CISIN_1g030070mg [Citrus sinensis]) HSP 1 Score: 156.0 bits (393), Expect = 9.000e-35 Identity = 100/185 (54.05%), Postives = 128/185 (69.19%), Query Frame = 1
BLAST of Spo02338.1 vs. NCBI nr
Match: gi|1021037409|gb|KZM95192.1| (hypothetical protein DCAR_018434 [Daucus carota subsp. sativus]) HSP 1 Score: 149.1 bits (375), Expect = 1.100e-32 Identity = 100/192 (52.08%), Postives = 124/192 (64.58%), Query Frame = 1
BLAST of Spo02338.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW41_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_022250 PE=3 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 3.400e-81 Identity = 168/172 (97.67%), Postives = 169/172 (98.26%), Query Frame = 1
BLAST of Spo02338.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C910_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119510 PE=3 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 1.700e-69 Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 1
BLAST of Spo02338.1 vs. UniProtKB/TrEMBL
Match: A0A067FRD1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030070mg PE=3 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 6.300e-35 Identity = 100/185 (54.05%), Postives = 128/185 (69.19%), Query Frame = 1
BLAST of Spo02338.1 vs. UniProtKB/TrEMBL
Match: A0A162A2I3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018434 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 7.600e-33 Identity = 100/192 (52.08%), Postives = 124/192 (64.58%), Query Frame = 1
BLAST of Spo02338.1 vs. UniProtKB/TrEMBL
Match: I1L857_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G028100 PE=3 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 2.900e-32 Identity = 98/189 (51.85%), Postives = 127/189 (67.20%), Query Frame = 1
BLAST of Spo02338.1 vs. ExPASy Swiss-Prot
Match: LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.800e-11 Identity = 63/189 (33.33%), Postives = 88/189 (46.56%), Query Frame = 1
BLAST of Spo02338.1 vs. ExPASy Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.300e-11 Identity = 57/177 (32.20%), Postives = 92/177 (51.98%), Query Frame = 1
BLAST of Spo02338.1 vs. ExPASy Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.700e-9 Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1
BLAST of Spo02338.1 vs. ExPASy Swiss-Prot
Match: YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.300e-6 Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 1
BLAST of Spo02338.1 vs. TAIR (Arabidopsis)
Match: AT3G22600.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 131.3 bits (329), Expect = 8.400e-31 Identity = 91/178 (51.12%), Postives = 113/178 (63.48%), Query Frame = 1
BLAST of Spo02338.1 vs. TAIR (Arabidopsis)
Match: AT2G48130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 107.5 bits (267), Expect = 1.300e-23 Identity = 75/190 (39.47%), Postives = 110/190 (57.89%), Query Frame = 1
BLAST of Spo02338.1 vs. TAIR (Arabidopsis)
Match: AT4G14815.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 93.2 bits (230), Expect = 2.500e-19 Identity = 65/173 (37.57%), Postives = 97/173 (56.07%), Query Frame = 1
BLAST of Spo02338.1 vs. TAIR (Arabidopsis)
Match: AT1G03103.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 90.9 bits (224), Expect = 1.300e-18 Identity = 70/170 (41.18%), Postives = 102/170 (60.00%), Query Frame = 1
BLAST of Spo02338.1 vs. TAIR (Arabidopsis)
Match: AT3G43720.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 71.2 bits (173), Expect = 1.000e-12 Identity = 63/189 (33.33%), Postives = 88/189 (46.56%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02338.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02338.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02338.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo02338.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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