Spo02397.1 (mRNA) | SpinachBase

Overview


Name	Spo02397.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S15
Location	chr5 : 2425113 .. 2427484 (+)
Sequence length	1020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCGACCCATTGTAAGTATATACAAGTCCAACCCAACAAATCAAACCAACACTATAATCCATGGGCCACTAACCCACATAATGCAAGCCCAATGGCAAACCCATCCCACTCTCAACCCTACAAATTTCTACCCCCAATTTAAACCCCAGACTCCCATTCGAAACCCTAGAAATTCCTCTTCAGCGCACACTATCTCTCTCTCAACTCCATCGCGCTCTCTCGCTTTGTAGAAACCGCATCATCAACCAACCATGGTAATTCATCATCATCTCCCTTTCTCTCTCCTCTCGCATTTAAATCTTCTGTAAATTTACGAATTTTTTGTTAACAGGCGGATGTTGAAGGAGATGTCGCAGCCGCTGCCGGAGCCGCCGCGCCAAAGAAGAGGACGTTCAGGAAGTTTAGCTACCGTGGAATCGACCTTGATGCTCTTCTTGACCTCTCTACTGATGAGCTTGTCAAGCATTTCCCTGCTCGTATTCGCAGAAGGTGAAATTGATTTTTTATTGTTTTGGTTTTCCGATTTAATTAATATCGTTTTTCGAAAATTAGGGTTTTGATTGTGTTGAAATTGAATTGATTTTCAGACTCGAGAGAGGTTTGAAGCGCAAGCCCATGGCTCTCATCAAGAAGCTCAGGAAAGCGGTATACCTTTTTCTCTTTTTAATTTCTGATTTATGCGGTTGGTGTGATAATTTTTAGCATATTCTTATTTATTAATTTGAGGTGTAAATTTTTATAAATTGAAGGGGCTTGATTATGCCTAACAGGTTATTTTGTTGGATTGAATGTGTATGCTTTAAATTAGGATATAGTGATTCGGATACAAATAGAATTATTATGATTTTTTTGTCAGTTTTAGGAGTTTGGATGATTATTTCTCTATTAGCTTGAATGATTGATTTCTGGAATTGGATCTATTGATTAACTATGTAATTGCAAACTGAGTTTTTGCGTTGAACTATGGATTTATGTGTGAATGATGGACACTTCAACACAATAGAATGACAATTGTTAGGAAAGTGGCAAAGTAATTCCTTTAGCAATAAACCTATTTGTGGATTAATGCTATTTTTTTGGGAGCTACACAACATATGCAATTTCTGTTAGTAGGTAGATATTGAAAGTTCTGATCAGAACTACACTGGTGCATGTTCAGTGATTGTATTATAAGTGTGTTAGTGATCCTGATATGCCGATAATGTCTTACAATAAGATTCCTGCATTGGGACGTGACCTTTCAGTTGAGAATAGAGTGTTGTTTTTGTATACGTAGCTGAACTTTGTATGGTATATGATGTTGTGTCATCAATTCTCTGTTGGTGTCTGGAAACTGTGACCTTCAATTCTGGTATAAATTACTTGTGCTGGTTGTAGATTTATTACCTGCCTCTGTTAAAAAGCTTCAAATGCATTGTGTGATGCTTATTTTTTCATGCCAATTGTTCAATCTCTCATGTATATTAGCTTCCAAGACTCCTTTTTATACATCACTTTTAGCAAGTGATGCATTGCTGGCCTAGTGTGTTTGATCTTATGCAGATTGCATTGAAATTTGTATTTGTGGGGACTCTTATTGTTTGTTCTTGAATATTTCTTCTCAACAGCATTTTTTATCCCTATAATTCCTACTTAGTTTAAATCTGGGAAACTTCTGTAAGCATGTCTCTTTCTTTTATGTTTGTTTATGGTTGTAATTCAATATGATGATTGTGATCCTCTCTTGGCAAGATCTCACATTTCTTAAATTGAGTTTTCCCTTCGTCCTGTAAGCAATATTAGAAATTCTGTAAACTTAACCCACCGTAATTGTTTTCCACAGAAACGTGAGGCCCCACCCGGCGAGAAGCCCGAGCCAGTAAGGACTCACCTACGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATCGGTGTCTACAACGGAAAGACCTTCAACCAGGTCGAAATCAAGCCTGAAATGATTGCCCACTACTTGGCTGAGTTCTCCATCTCATACAAGCCCGTGAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCTTCACGGTTTATTCCTCTTAAGTGAAGAAGAAATCCTTATCTAGAACTCAGGTTTTTTGTTTGCCATTATGTCTTGTTAGACTTTTAAGTACTATTATTTTTGCAAGGGTTTTAATGTGTTCGAATATACTTTGATTATGCCTATGAATTGAGTTTTGTTGCATTCGGTTGTTGCACATTATGGTACCAGTTTCTAATCGAGCAGAATCTCCACATTAATCTTTTCTTCGTTTTACTACCAAAGCTGTTTATTTTGGTGTACTATATATATTCTTGGCTTAAACTACTAGGTTTTAAGCTTGTGGATTCCTTGTTTATCCATG

mRNA sequence

CCACTCGACCCATTGTAAGTATATACAAGTCCAACCCAACAAATCAAACCAACACTATAATCCATGGGCCACTAACCCACATAATGCAAGCCCAATGGCAAACCCATCCCACTCTCAACCCTACAAATTTCTACCCCCAATTTAAACCCCAGACTCCCATTCGAAACCCTAGAAATTCCTCTTCAGCGCACACTATCTCTCTCTCAACTCCATCGCGCTCTCTCGCTTTGTAGAAACCGCATCATCAACCAACCATGGCGGATGTTGAAGGAGATGTCGCAGCCGCTGCCGGAGCCGCCGCGCCAAAGAAGAGGACGTTCAGGAAGTTTAGCTACCGTGGAATCGACCTTGATGCTCTTCTTGACCTCTCTACTGATGAGCTTGTCAAGCATTTCCCTGCTCGTATTCGCAGAAGACTCGAGAGAGGTTTGAAGCGCAAGCCCATGGCTCTCATCAAGAAGCTCAGGAAAGCGAAACGTGAGGCCCCACCCGGCGAGAAGCCCGAGCCAGTAAGGACTCACCTACGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATCGGTGTCTACAACGGAAAGACCTTCAACCAGGTCGAAATCAAGCCTGAAATGATTGCCCACTACTTGGCTGAGTTCTCCATCTCATACAAGCCCGTGAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCTTCACGGTTTATTCCTCTTAAGTGAAGAAGAAATCCTTATCTAGAACTCAGGTTTTTTGTTTGCCATTATGTCTTGTTAGACTTTTAAGTACTATTATTTTTGCAAGGGTTTTAATGTGTTCGAATATACTTTGATTATGCCTATGAATTGAGTTTTGTTGCATTCGGTTGTTGCACATTATGGTACCAGTTTCTAATCGAGCAGAATCTCCACATTAATCTTTTCTTCGTTTTACTACCAAAGCTGTTTATTTTGGTGTACTATATATATTCTTGGCTTAAACTACTAGGTTTTAAGCTTGTGGATTCCTTGTTTATCCATG

Coding sequence (CDS)

ATGGCGGATGTTGAAGGAGATGTCGCAGCCGCTGCCGGAGCCGCCGCGCCAAAGAAGAGGACGTTCAGGAAGTTTAGCTACCGTGGAATCGACCTTGATGCTCTTCTTGACCTCTCTACTGATGAGCTTGTCAAGCATTTCCCTGCTCGTATTCGCAGAAGACTCGAGAGAGGTTTGAAGCGCAAGCCCATGGCTCTCATCAAGAAGCTCAGGAAAGCGAAACGTGAGGCCCCACCCGGCGAGAAGCCCGAGCCAGTAAGGACTCACCTACGTAACATGATCATCGTTCCTGAGATGATCGGTAGCATCATCGGTGTCTACAACGGAAAGACCTTCAACCAGGTCGAAATCAAGCCTGAAATGATTGCCCACTACTTGGCTGAGTTCTCCATCTCATACAAGCCCGTGAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCTTCACGGTTTATTCCTCTTAAGTGA

Protein sequence

MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo02397	Spo02397	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo02397.1	Spo02397.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02397.1.exon.1	Spo02397.1.exon.1	exon
Spo02397.1.exon.2	Spo02397.1.exon.2	exon
Spo02397.1.exon.3	Spo02397.1.exon.3	exon
Spo02397.1.exon.4	Spo02397.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02397.1.utr5p.1	Spo02397.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02397.1.CDS.1	Spo02397.1.CDS.1	CDS
Spo02397.1.CDS.2	Spo02397.1.CDS.2	CDS
Spo02397.1.CDS.3	Spo02397.1.CDS.3	CDS
Spo02397.1.CDS.4	Spo02397.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02397.1.utr3p.1	Spo02397.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo02397.1 vs. NCBI nr
Match: gi|902237877|gb|KNA24968.1| (hypothetical protein SOVF_010860 [Spinacia oleracea])

HSP 1 Score: 307.0 bits (785), Expect = 1.900e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK
Sbjct: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. NCBI nr
Match: gi|731336301|ref|XP_010679183.1| (PREDICTED: 40S ribosomal protein S15 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 291.2 bits (744), Expect = 1.100e-75
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVEG+VAAAAGAA PKKRTFRKFSYRGIDLDALLD+ST+ELVK FPARIRRRL RGLK
Sbjct: 1   MADVEGEVAAAAGAA-PKKRTFRKFSYRGIDLDALLDMSTEELVKLFPARIRRRLSRGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Spo02397.1 vs. NCBI nr
Match: gi|947093068|gb|KRH41653.1| (hypothetical protein GLYMA_08G042300 [Glycine max])

HSP 1 Score: 278.5 bits (711), Expect = 7.200e-72
Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE DVAAAA A  PKKRTF+KFS+RG+DLDALLD+STDELVK F AR RRR +RGL 
Sbjct: 1   MADVEVDVAAAAAAGLPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. NCBI nr
Match: gi|351722029|ref|NP_001235950.1| (uncharacterized protein LOC100499781 [Glycine max])

HSP 1 Score: 278.5 bits (711), Expect = 7.200e-72
Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE DVAAAA A  PKKRTF+KFS+RG+DLDALLD+STDELVK F AR RRR +RGL 
Sbjct: 1   MADVEVDVAAAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. NCBI nr
Match: gi|657992836|ref|XP_008388680.1| (PREDICTED: 40S ribosomal protein S15-4 [Malus domestica])

HSP 1 Score: 277.7 bits (709), Expect = 1.200e-71
Identity = 140/155 (90.32%), Postives = 146/155 (94.19%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE DVAAA     PKKRTF+KFS+RG+DLDALLD+STDELVK FPAR RRR +RGLK
Sbjct: 1   MADVEADVAAAG---VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFPARARRRFQRGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI+HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZS4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_010860 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.300e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK
Sbjct: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F3G9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g120450 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.500e-76
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVEG+VAAAAGAA PKKRTFRKFSYRGIDLDALLD+ST+ELVK FPARIRRRL RGLK
Sbjct: 1   MADVEGEVAAAAGAA-PKKRTFRKFSYRGIDLDALLDMSTEELVKLFPARIRRRLSRGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: I1KQ69_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G042300 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.000e-72
Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE DVAAAA A  PKKRTF+KFS+RG+DLDALLD+STDELVK F AR RRR +RGL 
Sbjct: 1   MADVEVDVAAAAAAGLPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: C6SWG3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G234800 PE=2 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 5.000e-72
Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE DVAAAA A  PKKRTF+KFS+RG+DLDALLD+STDELVK F AR RRR +RGL 
Sbjct: 1   MADVEVDVAAAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Match: I1MQW1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G004300 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.500e-72
Identity = 140/155 (90.32%), Postives = 145/155 (93.55%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE D AAAAGAA PKKRTF+KFS+RG+DLDALLD+STDELVK F AR RRR +RGL 
Sbjct: 1   MADVEVDAAAAAGAAQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155

[Close]

BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 268.1 bits (684), Expect = 6.100e-71
Identity = 134/155 (86.45%), Postives = 144/155 (92.90%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE +   AAGA  PKKRTFRK+SYRG+DLDALLD+STD+LV+ FPAR RRR +RGLK
Sbjct: 1   MADVEVETEVAAGAQ-PKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.100e-70
Identity = 135/155 (87.10%), Postives = 139/155 (89.68%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADV    A   G A PKKRTFRKFSYRG+DLD LLD+ TDELVK F AR RRR +RGLK
Sbjct: 1   MADVSD--AVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.600e-69
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE +VAAA     PKKRTF+KF+++G+DLDALLD+STD+LVK F +RIRRR  RGL 
Sbjct: 1   MADVEPEVAAAG---VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.600e-69
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE +VAAA     PKKRTF+KF+++G+DLDALLD+STD+LVK F +RIRRR  RGL 
Sbjct: 1   MADVEPEVAAAG---VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.200e-68
Identity = 131/155 (84.52%), Postives = 140/155 (90.32%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MAD + DV    G   PKKRTF+KFSYRG+DLDALLD++++ELVK F AR RRR +RGLK
Sbjct: 1   MADADVDV----GPVQPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLK 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           R+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT1G04270.1 (cytosolic ribosomal protein S15)

HSP 1 Score: 262.7 bits (670), Expect = 1.400e-70
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE +VAAA     PKKRTF+KF+++G+DLDALLD+STD+LVK F +RIRRR  RGL 
Sbjct: 1   MADVEPEVAAAG---VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G09510.1 (Ribosomal protein S19 family protein)

HSP 1 Score: 262.7 bits (670), Expect = 1.400e-70
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MADVE +VAAA     PKKRTF+KF+++G+DLDALLD+STD+LVK F +RIRRR  RGL 
Sbjct: 1   MADVEPEVAAAG---VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G09490.1 (Ribosomal protein S19 family protein)

HSP 1 Score: 246.5 bits (628), Expect = 1.100e-65
Identity = 123/155 (79.35%), Postives = 141/155 (90.97%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MA+VE DV+AAA A   KKRTF+KFS++G+DLDALLD+ TD+LV+ FP+RIRRR+ RGL 
Sbjct: 1   MAEVEPDVSAAALA---KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPE
Sbjct: 61  RKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 121 MIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

[Close]

BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G09500.1 (Ribosomal protein S19 family protein)

HSP 1 Score: 246.1 bits (627), Expect = 1.400e-65
Identity = 128/155 (82.58%), Postives = 137/155 (88.39%), Query Frame = 1


		  
Query: 1   MADVEGDVAAAAGAAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLK 60
           MAD E    AAAG    KKRTF+KFS+RG+DLDALLD+STD+LVK FP+RIRRR  RGL 
Sbjct: 1   MADPE---VAAAGIV--KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLT 60

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 61  RKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 120

Query: 121 MIAHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 156
           MI HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 MIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Match: AT5G43640.1 (Ribosomal protein S19 family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.200e-64
Identity = 120/142 (84.51%), Postives = 129/142 (90.85%), Query Frame = 1


		  
Query: 14  AAAPKKRTFRKFSYRGIDLDALLDLSTDELVKHFPARIRRRLERGLKRKPMALIKKLRKA 73
           A   KKRTF+KFS+RG+DLDALLD+S ++LVKHF +RIRRR  RGL RKPMALIKKLRKA
Sbjct: 8   AGIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKA 67

Query: 74  KREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIAHYLAEFSISY 133
           K EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI HYLAEFSISY
Sbjct: 68  KMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY 127

Query: 134 KPVKHGRPGIGATHSSRFIPLK 156
           KPVKHGRPG+GAT+SSRFIPLK
Sbjct: 128 KPVKHGRPGVGATNSSRFIPLK 149

The following BLAST results are available for this feature:

BLAST of Spo02397.1 vs. NCBI nr
BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
BLAST of Spo02397.1 vs. TAIR (Arabidopsis)

BLAST of Spo02397.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237877\|gb\|KNA24968.1\|	1.9e-80	100.	hypothetical protein SOVF_0108...	[more]
gi\|731336301\|ref\|XP_010679183.1\|	1.1e-75	96.1	PREDICTED: 40S ribosomal prote...	[more]
gi\|947093068\|gb\|KRH41653.1\|	7.2e-72	90.3	hypothetical protein GLYMA_08G...	[more]
gi\|351722029\|ref\|NP_001235950.1\|	7.2e-72	90.3	uncharacterized protein LOC100...	[more]
gi\|657992836\|ref\|XP_008388680.1\|	1.2e-71	90.3	PREDICTED: 40S ribosomal prote...	[more]

BLAST of Spo02397.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZS4_SPIOL	1.3e-80	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8F3G9_BETVU	7.5e-76	96.1	Uncharacterized protein OS=Bet...	[more]
I1KQ69_SOYBN	5.0e-72	90.3	Uncharacterized protein OS=Gly...	[more]
C6SWG3_SOYBN	5.0e-72	90.3	Uncharacterized protein OS=Gly...	[more]
I1MQW1_SOYBN	8.5e-72	90.3	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo02397.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RS15_ORYSJ	6.1e-71	86.4	40S ribosomal protein S15 OS=O...	[more]
RS15_ELAOL	5.1e-70	87.1	40S ribosomal protein S15 OS=E...	[more]
RS154_ARATH	2.6e-69	85.1	40S ribosomal protein S15-4 OS...	[more]
RS151_ARATH	2.6e-69	85.1	40S ribosomal protein S15-1 OS...	[more]
RS15_PICMA	2.2e-68	84.5	40S ribosomal protein S15 OS=P...	[more]

BLAST of Spo02397.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G04270.1	1.4e-70	85.1	cytosolic ribosomal protein S1...	[more]
AT5G09510.1	1.4e-70	85.1	Ribosomal protein S19 family p...	[more]
AT5G09490.1	1.1e-65	79.3	Ribosomal protein S19 family p...	[more]
AT5G09500.1	1.4e-65	82.5	Ribosomal protein S19 family p...	[more]
AT5G43640.1	1.2e-64	84.5	Ribosomal protein S19 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 120..135 score: 1.0E-11coord: 88..107 score: 1.0E-11coord: 108..120 score: 1.0
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 51..144 score: 20
IPR002222	Ribosomal protein S19/S15	PIR	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 9..155 score: 1.2
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 2..155 score: 7.0E
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 57..138 score: 1.7
IPR005713	Ribosomal protein S19A/S15e	TIGRFAMs	TIGR01025	TIGR01025	coord: 22..155 score: 1.7
IPR023575	Ribosomal protein S19, superfamily	GENE3D	3.30.860.10		coord: 56..148 score: 8.3
IPR023575	Ribosomal protein S19, superfamily	unknown	SSF54570	Ribosomal protein S19	coord: 59..139 score: 3.92
None	No IPR available	PANTHER	PTHR11880:SF10	40S RIBOSOMAL PROTEIN S15-6	coord: 2..155 score: 7.0E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding