Spo02452.1 (mRNA) | SpinachBase

Overview


Name	Spo02452.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Probable gamma-secretase subunit PEN-2
Location	chr3 : 64786210 .. 64789185 (-)
Sequence length	491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTCACAAATACTCGCAACTTTGGTATTGGAAAAAAGAAAAAAAAAATGGAGAGATCAGGGGAAGAGGGTTCTTCTTCATCATCACCTTCAACCTCAACCCTTCTCCCTCTACAAAATCCCAATATCTCCGCTAACACATCGGCAATTAGGAGACCTCGTTGGCCGACGATCGACGGACCACTTGGACTTTCAGAGGAAGACTCGGTTACATATGCTCGCCGCTTTTACAAGTTTGGATTTTTGCTTCTTCCTTGGCTTTGGGCTGTCAATTGCTTCTACTTTTGGCCTGTCCTTCGTCACTCTCACTCCTTCCCTTCAATCCGACGCTGTATGTATTCCATTTTTCTCTCTCTCCTCGATTTTTCCCATTTCCCCTGGAATTTCCTGAATTGGGTGTGTTTAAGTTTGATGGATTTTTCCATTTATGATTGAGAAATTAGGTGCCCTTTTCAAAATTTGATGATTTTATGAACTGGGTTTGCTTTTGGTTTCAGCTTTGTGCAGTGAATTGTTTCATTTTGGTTAAGAGTTCTTGGAACTCATTTTAGGTCCGAAGATAATACGATTTGGTATGCTTTTCATTTTAGCTTTGTGTAGTGATTTGTTGTTCCATTTACGATTATGGATTTTAGGTACCCATTTCAGTTCTGAAGATTGTATGAGCTGGTTTTGCTTTTGATTTTGTAGTGGAATATCTCCTTCACCCTCTTTCTCCTAGTTTCAAATGGTTCTTGAACGGTGGCATGAATTAGTCATTGTAACTGAGGATTAAGCATTACCCTTGCTTATTGGGATGGTTTTGTCACTTTATGGATTGGGTTCCCTTTAGTTTAAAGCTTTGTTTGGATATGTATGTTCTCTTCAAGGATTAAGTATATCAGTTCTAATTTGGATGTCATTTTCACTTTAGTTTTCAGACCTGTGTTTCTCTTGGGTTATGCTTATGTCATCTGAGACAGTTGAAGTGATGTGTACTAGGGTCGATAAGCTGTGAAATCTTTGTGTTTGTGGTTTATGATACTGTGATATTGTGGCTAAATATGAGAGCATGTCTAAACCATCCCTTGCCTTTTCTAGTTGAAGGGCATGAAAGTATGCGGTATGCCGCTGCCAACATTGATGTAACTTATAAGTGTAAGCCAGCCTAGGTTGCTTGAGAAGCTTGGCATGGTTACAACTGAGAATTTGTGTATAGCTGAGCTCGTGTGTTGTTGGGTTTGTAGCATTGAAGGGATTCAAACAATTTTATTCAAGGGACCTGAGAGCTGAGGTTTGTTGTGGGAAGGTGAGAGTTGAGGCAGCAATGTCCTGTTGACCTGTTCCAACCTGGTAATAATAATGGTGACTGGGCTGTTATTTAGACTCTTTTCAGCCATTATGCTTGTTCATCAGTTGGTTTCAGTGTATAGAGATGTCGATTTCAAATTTGACCTAGCAGATAACTAGATAGGTAGCTTTTGCTGTTACTTCCAGCGCATAGTCTTCGTTGCTGTTTTCATGGATCAAGACATATTGTGATAGCTTTTTCAAATTTGACCTAGAAGATAACTAGATTGGTAGCTTTTTCTGTTACTTTTAGCGCGTAGTCTTTGTAGCTCATTTTGTGGTCAAGCAATCTAAAGATATCATATTGATGGAGATTGGAGCGTTGTGTATATCGTAGTTGTTGAGAGGAAACTGAAATCAGGATTTTGTTGCTGTATGGGCTTAAGGCTGGCACTAGATGATAAAGTATGGTTACATAGTGATTGGATTAGAAGACATTTTTGGTGCAAGTACGTATTGTAGCATGAAAGAGGGAGTTGAGTTTGATGAGCAGTTGTCTTCTAGGTTTTCAATGTATCGCGATAGGGATTTGGTATCAGGCAGACCAGCGTGTTCCAGCTTTATTTCAACAAGTTATTGTATTCCAGCAATAGACTCGTGTAGTTCTCCCTATGAAATTTCTTTTTCCCTTGTTATGTTTGTCATGCATCCGGTCACTGATTTCCTTTGAATGTGCATGCTTTGTTCTTATGGTGAGCCAAATGTTGTCGTGAACTAGATTCTAGAACGCATCCAACAAATCATCTGCTAATTATTTAGGGTACTAACATTATAGAGATCTAGTCGCATACCATATTTGTTCTTCTAGGACCCAGAAGTTGTTGGGTTTAGGATATACACAACAATATCCAGAGGTCCCAAATTGTAACAAGGGGAAGACACCAGGTGACAGGGAGGGTTGTAATTTCTGACAATTAAATACAGCTTCAATAAAACGAATCTTGCAGTTGGATTTTTGATCCTCTAGAGTTCTAAAATAACTCTACAAGGTAGAGTTTGAGCATATCAACCATTGAATGAAAAATCAATGGTTCATATATTATCTTTCCAAAATTCTCTCTATTTTTTCTCATCAATATGAGCCATTGATTTTAAAATGTATGGTTTAGATACAACTCTACCTTGTAGAGTTTTATTAAAATTCTAGAGGATCCGGACTCGCCCAAATGCCCAGCTTCAAAGCATCATATTTGCCTCTCAGTGATGCTGACTTTTGCAGTATCACTATCCATGATAAGTAAACTTTATTCCTACTCATTCAATCACTTATTTTCTAGAAACGACATAATTGATCTTCTTCACGCTTCCTGTGGGGTGAAGAATAACAAAGCTCTGCCCTGTAATCTTTTATGAATTGTCTCTTTTCTATTTAAGAATTAACGCTAACTATTGGTCTTTCAAAACAGCCTTCTATATTCCCGAGTAAACAATGTTGCTTTTTTTTCTCCAGCCTCATTTGCATAATGTAACAATTCTCTTTCCTGCAGATGTTGTTGGATCAGCTATAGGGTGCTCTATTGCCACTATCCTGCTGTCTTCATGGGCATTAACATTTTCTATTGGAGGGGAGCGCTTTTTTGGCCCGGTTTGGAACAAGCTTGTTATGTACAATGTTGCTGATCAGTTAGGTCTAACAGGTTGGATGTAG

mRNA sequence

ACTTCACAAATACTCGCAACTTTGGTATTGGAAAAAAGAAAAAAAAAATGGAGAGATCAGGGGAAGAGGGTTCTTCTTCATCATCACCTTCAACCTCAACCCTTCTCCCTCTACAAAATCCCAATATCTCCGCTAACACATCGGCAATTAGGAGACCTCGTTGGCCGACGATCGACGGACCACTTGGACTTTCAGAGGAAGACTCGGTTACATATGCTCGCCGCTTTTACAAGTTTGGATTTTTGCTTCTTCCTTGGCTTTGGGCTGTCAATTGCTTCTACTTTTGGCCTGTCCTTCGTCACTCTCACTCCTTCCCTTCAATCCGACGCTATGTTGTTGGATCAGCTATAGGGTGCTCTATTGCCACTATCCTGCTGTCTTCATGGGCATTAACATTTTCTATTGGAGGGGAGCGCTTTTTTGGCCCGGTTTGGAACAAGCTTGTTATGTACAATGTTGCTGATCAGTTAGGTCTAACAGGTTGGATGTAG

Coding sequence (CDS)

ATGGAGAGATCAGGGGAAGAGGGTTCTTCTTCATCATCACCTTCAACCTCAACCCTTCTCCCTCTACAAAATCCCAATATCTCCGCTAACACATCGGCAATTAGGAGACCTCGTTGGCCGACGATCGACGGACCACTTGGACTTTCAGAGGAAGACTCGGTTACATATGCTCGCCGCTTTTACAAGTTTGGATTTTTGCTTCTTCCTTGGCTTTGGGCTGTCAATTGCTTCTACTTTTGGCCTGTCCTTCGTCACTCTCACTCCTTCCCTTCAATCCGACGCTATGTTGTTGGATCAGCTATAGGGTGCTCTATTGCCACTATCCTGCTGTCTTCATGGGCATTAACATTTTCTATTGGAGGGGAGCGCTTTTTTGGCCCGGTTTGGAACAAGCTTGTTATGTACAATGTTGCTGATCAGTTAGGTCTAACAGGTTGGATGTAG

Protein sequence

MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVADQLGLTGWM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo02452	Spo02452	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo02452.1	Spo02452.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02452.1.utr5p.1	Spo02452.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02452.1.CDS.2	Spo02452.1.CDS.2	CDS
Spo02452.1.CDS.1	Spo02452.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02452.1.exon.2	Spo02452.1.exon.2	exon
Spo02452.1.exon.1	Spo02452.1.exon.1	exon

Homology

[Close]

BLAST of Spo02452.1 vs. NCBI nr
Match: gi|902156529|gb|KNA06022.1| (hypothetical protein SOVF_184910 [Spinacia oleracea])

HSP 1 Score: 303.5 bits (776), Expect = 2.000e-79
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1


		  
Query: 1   MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF 60
           MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF
Sbjct: 1   MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF 60

Query: 61  YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG 120
           YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG
Sbjct: 61  YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG 120

Query: 121 GERFFGPVWNKLVMYNVADQLGLTGWM 148
           GER FGPVWNKLVMYNVADQLGLTGWM
Sbjct: 121 GERLFGPVWNKLVMYNVADQLGLTGWM 147

[Close]

BLAST of Spo02452.1 vs. NCBI nr
Match: gi|731338208|ref|XP_010680204.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 245.4 bits (625), Expect = 6.400e-62
Identity = 122/147 (82.99%), Postives = 128/147 (87.07%), Query Frame = 1


		  
Query: 1   MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF 60
           MERS  EG SSSS   ST LPLQNPNIS+N+     PRWPTIDG LGLSEE+SV YARRF
Sbjct: 1   MERS-REGVSSSSTGESTFLPLQNPNISSNS-----PRWPTIDGALGLSEEESVIYARRF 60

Query: 61  YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG 120
           YKFGFLLLPWLWA+NCFYFWPVLRHS SFPS RRYVVGSA+G SIATILLSSWALTFSIG
Sbjct: 61  YKFGFLLLPWLWALNCFYFWPVLRHSSSFPSFRRYVVGSAVGFSIATILLSSWALTFSIG 120

Query: 121 GERFFGPVWNKLVMYNVADQLGLTGWM 148
           GER FGPVWN+LVMYNVADQLGL GWM
Sbjct: 121 GERLFGPVWNQLVMYNVADQLGLAGWM 141

[Close]

BLAST of Spo02452.1 vs. NCBI nr
Match: gi|357464679|ref|XP_003602621.1| (GDP-mannose transporter, putative [Medicago truncatula])

HSP 1 Score: 205.3 bits (521), Expect = 7.300e-50
Identity = 93/123 (75.61%), Postives = 104/123 (84.55%), Query Frame = 1


		  
Query: 24  NPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYFWPVL 83
           NPN + N  A+  P WPTIDGPLGLSEE+SV YARRFYKFGF LLP LWAVNCFYFWPV+
Sbjct: 10  NPNPNPNPLALSVPVWPTIDGPLGLSEEESVKYARRFYKFGFALLPLLWAVNCFYFWPVI 69

Query: 84  RHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVADQLGL 143
           RHSHSFP IR YVVGSA+G ++   LL SWALTFSIGGER FGPVW++LVMYN+AD+ GL
Sbjct: 70  RHSHSFPRIRPYVVGSAVGFTVFATLLCSWALTFSIGGERLFGPVWDQLVMYNLADRFGL 129

Query: 144 TGW 147
           TGW
Sbjct: 130 TGW 132

[Close]

BLAST of Spo02452.1 vs. NCBI nr
Match: gi|955324463|ref|XP_014631956.1| (PREDICTED: probable gamma-secretase subunit PEN-2 [Glycine max])

HSP 1 Score: 204.5 bits (519), Expect = 1.200e-49
Identity = 97/127 (76.38%), Postives = 106/127 (83.46%), Query Frame = 1


		  
Query: 21  PLQNPNISANTS-AIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYF 80
           P  NPN + N S A   P WPTIDGPLGLSEE+SV YARRFYKFGF LLP LWAVNCFYF
Sbjct: 9   PNPNPNPNRNNSVASSVPVWPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFYF 68

Query: 81  WPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVAD 140
           WP LRHSHSFP IR YVVGSAIG ++   LLSSWALTF+IGGER FGPVW++LVMYN+AD
Sbjct: 69  WPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVWDQLVMYNLAD 128

Query: 141 QLGLTGW 147
           +LGLTGW
Sbjct: 129 RLGLTGW 135

[Close]

BLAST of Spo02452.1 vs. NCBI nr
Match: gi|955317357|ref|XP_014630358.1| (PREDICTED: probable gamma-secretase subunit PEN-2 isoform X2 [Glycine max])

HSP 1 Score: 203.8 bits (517), Expect = 2.100e-49
Identity = 96/127 (75.59%), Postives = 105/127 (82.68%), Query Frame = 1


		  
Query: 21  PLQNPNISANTS-AIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYF 80
           P  NPN   N S A   P WPTIDGPLGLSEE+SV YARRFY FGF LLP LWAVNCFYF
Sbjct: 10  PNPNPNPHRNNSVASSMPLWPTIDGPLGLSEEESVGYARRFYTFGFALLPLLWAVNCFYF 69

Query: 81  WPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVAD 140
           WPVLRHSHSFP IR YVVGSAIG ++   LLSSW+LTF+IGGER FGPVW++LVMYN+AD
Sbjct: 70  WPVLRHSHSFPRIRPYVVGSAIGFAVCATLLSSWSLTFAIGGERLFGPVWDQLVMYNLAD 129

Query: 141 QLGLTGW 147
           +LGLTGW
Sbjct: 130 RLGLTGW 136

[Close]

BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFI0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_184910 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.400e-79
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1


		  
Query: 1   MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF 60
           MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF
Sbjct: 1   MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF 60

Query: 61  YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG 120
           YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG
Sbjct: 61  YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG 120

Query: 121 GERFFGPVWNKLVMYNVADQLGLTGWM 148
           GER FGPVWNKLVMYNVADQLGLTGWM
Sbjct: 121 GERLFGPVWNKLVMYNVADQLGLTGWM 147

[Close]

BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAW3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132590 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.500e-62
Identity = 122/147 (82.99%), Postives = 128/147 (87.07%), Query Frame = 1


		  
Query: 1   MERSGEEGSSSSSPSTSTLLPLQNPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRF 60
           MERS  EG SSSS   ST LPLQNPNIS+N+     PRWPTIDG LGLSEE+SV YARRF
Sbjct: 1   MERS-REGVSSSSTGESTFLPLQNPNISSNS-----PRWPTIDGALGLSEEESVIYARRF 60

Query: 61  YKFGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIG 120
           YKFGFLLLPWLWA+NCFYFWPVLRHS SFPS RRYVVGSA+G SIATILLSSWALTFSIG
Sbjct: 61  YKFGFLLLPWLWALNCFYFWPVLRHSSSFPSFRRYVVGSAVGFSIATILLSSWALTFSIG 120

Query: 121 GERFFGPVWNKLVMYNVADQLGLTGWM 148
           GER FGPVWN+LVMYNVADQLGL GWM
Sbjct: 121 GERLFGPVWNQLVMYNVADQLGLAGWM 141

[Close]

BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
Match: G7JBL2_MEDTR (GDP-mannose transporter, putative OS=Medicago truncatula GN=MTR_3g096320 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.100e-50
Identity = 93/123 (75.61%), Postives = 104/123 (84.55%), Query Frame = 1


		  
Query: 24  NPNISANTSAIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYFWPVL 83
           NPN + N  A+  P WPTIDGPLGLSEE+SV YARRFYKFGF LLP LWAVNCFYFWPV+
Sbjct: 10  NPNPNPNPLALSVPVWPTIDGPLGLSEEESVKYARRFYKFGFALLPLLWAVNCFYFWPVI 69

Query: 84  RHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVADQLGL 143
           RHSHSFP IR YVVGSA+G ++   LL SWALTFSIGGER FGPVW++LVMYN+AD+ GL
Sbjct: 70  RHSHSFPRIRPYVVGSAVGFTVFATLLCSWALTFSIGGERLFGPVWDQLVMYNLADRFGL 129

Query: 144 TGW 147
           TGW
Sbjct: 130 TGW 132

[Close]

BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PPM2_GLYSO (Putative gamma-secretase subunit PEN-2 OS=Glycine soja GN=glysoja_011887 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.700e-50
Identity = 97/127 (76.38%), Postives = 106/127 (83.46%), Query Frame = 1


		  
Query: 21  PLQNPNISANTS-AIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYF 80
           P  NPN + N S A   P WPTIDGPLGLSEE+SV YARRFYKFGF LLP LWAVNCFYF
Sbjct: 9   PNPNPNPNRNNSVASSVPVWPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFYF 68

Query: 81  WPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVAD 140
           WP LRHSHSFP IR YVVGSAIG ++   LLSSWALTF+IGGER FGPVW++LVMYN+AD
Sbjct: 69  WPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVWDQLVMYNLAD 128

Query: 141 QLGLTGW 147
           +LGLTGW
Sbjct: 129 RLGLTGW 135

[Close]

BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
Match: I1KBJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G153700 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.700e-50
Identity = 97/127 (76.38%), Postives = 106/127 (83.46%), Query Frame = 1


		  
Query: 21  PLQNPNISANTS-AIRRPRWPTIDGPLGLSEEDSVTYARRFYKFGFLLLPWLWAVNCFYF 80
           P  NPN + N S A   P WPTIDGPLGLSEE+SV YARRFYKFGF LLP LWAVNCFYF
Sbjct: 9   PNPNPNPNRNNSVASSVPVWPTIDGPLGLSEEESVGYARRFYKFGFALLPLLWAVNCFYF 68

Query: 81  WPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGERFFGPVWNKLVMYNVAD 140
           WP LRHSHSFP IR YVVGSAIG ++   LLSSWALTF+IGGER FGPVW++LVMYN+AD
Sbjct: 69  WPALRHSHSFPRIRPYVVGSAIGFAVFATLLSSWALTFAIGGERLFGPVWDQLVMYNLAD 128

Query: 141 QLGLTGW 147
           +LGLTGW
Sbjct: 129 RLGLTGW 135

[Close]

BLAST of Spo02452.1 vs. ExPASy Swiss-Prot
Match: PEN2_ARATH (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.400e-47
Identity = 94/143 (65.73%), Postives = 111/143 (77.62%), Query Frame = 1


		  
Query: 7   EGSSSSSPSTSTLL---PLQNPNISANTSAIRRPR-WPTIDGPLGLSEEDSVTYARRFYK 66
           E + S  PS + +    P  NPN +  ++ I   + WPTIDGPLGL+EE SV YARRFYK
Sbjct: 2   EATRSDDPSLNPIRNRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYK 61

Query: 67  FGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGE 126
           FGF LLPWLW VNCFYFWPVLRHS +FP IR YVV SAIG S+ T LLS+WALTFSIGGE
Sbjct: 62  FGFALLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGE 121

Query: 127 RFFGPVWNKLVMYNVADQLGLTG 146
           + FGP+++KLVMYNVAD+LGL+G
Sbjct: 122 QLFGPLYDKLVMYNVADRLGLSG 144

[Close]

BLAST of Spo02452.1 vs. TAIR (Arabidopsis)
Match: AT5G09310.1 (Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379))

HSP 1 Score: 188.7 bits (478), Expect = 2.500e-48
Identity = 94/143 (65.73%), Postives = 111/143 (77.62%), Query Frame = 1


		  
Query: 7   EGSSSSSPSTSTLL---PLQNPNISANTSAIRRPR-WPTIDGPLGLSEEDSVTYARRFYK 66
           E + S  PS + +    P  NPN +  ++ I   + WPTIDGPLGL+EE SV YARRFYK
Sbjct: 2   EATRSDDPSLNPIRNRNPNPNPNPNPLSTIISSAQVWPTIDGPLGLTEEASVDYARRFYK 61

Query: 67  FGFLLLPWLWAVNCFYFWPVLRHSHSFPSIRRYVVGSAIGCSIATILLSSWALTFSIGGE 126
           FGF LLPWLW VNCFYFWPVLRHS +FP IR YVV SAIG S+ T LLS+WALTFSIGGE
Sbjct: 62  FGFALLPWLWFVNCFYFWPVLRHSRAFPQIRNYVVRSAIGFSVFTALLSAWALTFSIGGE 121

Query: 127 RFFGPVWNKLVMYNVADQLGLTG 146
           + FGP+++KLVMYNVAD+LGL+G
Sbjct: 122 QLFGPLYDKLVMYNVADRLGLSG 144

The following BLAST results are available for this feature:

BLAST of Spo02452.1 vs. NCBI nr
BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
BLAST of Spo02452.1 vs. ExPASy Swiss-Prot
BLAST of Spo02452.1 vs. TAIR (Arabidopsis)

BLAST of Spo02452.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902156529\|gb\|KNA06022.1\|	2.0e-79	99.3	hypothetical protein SOVF_1849...	[more]
gi\|731338208\|ref\|XP_010680204.1\|	6.4e-62	82.9	PREDICTED: probable gamma-secr...	[more]
gi\|357464679\|ref\|XP_003602621.1\|	7.3e-50	75.6	GDP-mannose transporter, putat...	[more]
gi\|955324463\|ref\|XP_014631956.1\|	1.2e-49	76.3	PREDICTED: probable gamma-secr...	[more]
gi\|955317357\|ref\|XP_014630358.1\|	2.1e-49	75.5	PREDICTED: probable gamma-secr...	[more]

BLAST of Spo02452.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QFI0_SPIOL	1.4e-79	99.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8CAW3_BETVU	4.5e-62	82.9	Uncharacterized protein OS=Bet...	[more]
G7JBL2_MEDTR	5.1e-50	75.6	GDP-mannose transporter, putat...	[more]
A0A0B2PPM2_GLYSO	8.7e-50	76.3	Putative gamma-secretase subun...	[more]
I1KBJ6_SOYBN	8.7e-50	76.3	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo02452.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
PEN2_ARATH	4.4e-47	65.7	Probable gamma-secretase subun...	[more]

BLAST of Spo02452.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G09310.1	2.5e-48	65.7	Gamma-secretase aspartyl prote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PFAM	PF10251	PEN-2	coord: 50..137 score: 2.1
None	No IPR available	PANTHER	PTHR16318	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 14..146 score: 4.4
None	No IPR available	PANTHER	PTHR16318:SF0	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 14..146 score: 4.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007219	Notch signaling pathway
cellular_component	GO:0016021	integral component of membrane