Spo02577.1 (mRNA) | SpinachBase

Overview


Name	Spo02577.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Succinate dehydrogenase subunit 3
Location	chr3 : 5959889 .. 5965299 (-)
Sequence length	1443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAGTCTCAACGAGAGAAATAAAAAATAAGAATAGTTGGAGTTGGTGAAGCTCAGAATTCAATCTTTCAGATCATCGACAAAATGATGCTCTCTCGTATCGGGCGTTCAATCTCCAGATCTTCTCGCTCCTCGCTCTTCAATTCAGTTAGTTCAACTCCTCTTCTCTTCAATTTTCGCTATTAATCGGTTTTAATCTCTAATTTATCGGTATATAATACAACAATTTTGTCAAAATCAAACTTAATTACAAAAAAAATCATCAACTTCGTCGAACAAAAGCATTTGTAAATCTATGGCCAAAAAATTCAGTGTCAATGATTGTAGTTCAGTTTTAGTAGAAAAGTTATTTTGGATCAATTGAAATCAAGGCAAGTGGTCTTAATCATATGTCAATTTCAACTCGGAATGTTCATCAGATTGAGCTGGTTTTCAATAGAATTTTTTCTAAATTTTGTTATCCATGTGGACAGACTCTTGGTAGTGACGGATACGGAGCAAGAATTGCAGGGATTGCCAATCAATCGGGCGGAATCGCACCACGCAGTACTGAACAAGGGCTAGGGTTTGTCAATGCTTATTTTTCGTCAACGGGCGCTGCTGGAAAACAGTCCGGTCCTTCGTTTTCGCCTGTTTCTCGGCCCGATTTCGCAAACTATAGCTTTGCTAGGTTCTTATCAAGTGATGTCCCAAAGAAATTAGGTAAATAATTCAAGTAATCACCTTTTTTGTTCTTGCCATTGTTTATAACTTATTACCTCTGTCCCAAATTAGTTGTTACACTTACCTTTGCATAATAAGTGGTTGTTTGGTTATCAATTGTTATTTTATTGAAAAAGTAGATGTGATAGGAGTTAATGGAGTATTTTTTTTAATTGAAATGAGAGAGGGTGGGGGATAGAGACAATATAATAATTGTGGAGTCATTCCTAATTTAGAAGTATAACAACGTAGACGAAAAAGGGAAGTGTAACAATTAATATGGGACGGAGGGATTACCATTTTGGTCTTAAGAACTTAAGAATGTTTGGTTGCTTATGATGAGAGATAAGAGATTTAACTGCCAGTTTTCGCAGAGTAGGAGTATTCACACTAGTTCGAGGTTTTGTCGTAAATATCCAACTTAATATCACTATGGTGTATGTTACGTTTATATAGTGATAAATTATTCATGCCAAAGAAAGCTAGAAACAAGAGCTAATTTTACCTCGATATGATTCTTAGGAAAAGTTATTAGTGGTGCTTGATCGATTGTAGCCTCTTAGAAAGTTATTTAACTTAACCAGAAACAACTCCCTTCAATTTCTAGGATAGTTTTAAACTTTGGTTTTTCACGAAATACCCCTTGGTTTTCACAAAATTCACCAAATACACCCGACTTTTCAAAATACGCCAAATATCCCTAAATTTCAATAATATTCACCAAATACCCTAATAGCGTCATCAACCCCAAAACAACACAGTTAACATCTAACTAGCAATTGTACCCATGCAATATATATAAAATGTGAAAAACTTATCGCTTGATATACAATATTTAGGTATCATAAAATATAGTTTTGTTTTTATTGTACAATCACAAATATTTGGTTAGTGTAAGAATATAAATAACTAGAAAGTAGAAACACTTTTATATTTATATTTATTTTTATTTTTATAATTTGTTGGTTTATACTATTAATATGGAAGGCATTACATGCCAAGCTTGGCCAACAATGGTTATAGTAGCATAATGATGAGTATAAATCACATTATGCTAAATTTAAGAAACTCATCTTTTTTAAGAAACTCACCATGCCACTAAAGCCAAGATACAAACTCATCTTTTTTAAGAAGGCCTTGTTTAGCCATGGAATTTGCATATATTTGAATCCCGACTTTTGTACAAGATGCTAATTCCCGGTCCATTTACCAACGTTCCATGAATGAAATTAATGGTAAAATTTAGATTGTAAGGGCCCTTGATTTCTCCATTACACCATTTGACAGCGTTAACCGAGTCCGATTCCACAATGAGACTTGAGTGATTCAGACGCTCGAAATTGAGGAAAATCTTGAGTGTTCTATAGATGGCAAGAACCTCCGCGTTATTGATTTTCATATAGGGAATGAGGCTTGAGAAACATTTTATGTTTATTACTCTTTTTCTACTTTAAGGTTATTATAGAATCAGGCTAAACAAAATTCAGGAGTAACAATCAATCAACGACAATGGTAATGTGATATACAATATATTTCTTCTAAAATAGCAAAGAAAAATGATTATTAATTAAAATAAATGGGAAAATTTAAGACGTAATCATAGAAGAAGTGGAAGACTGGAAGGTACATAAAATAAAAGCATATTACCTCTAAAAATGTATGTTGATTGTGTGAATGATATAACGAAAAATGGTTGGGAGTCAAATTTATTTATAAGGGGGCATGAGAGATGAAAGGTTGATGGTTTATTGGAAAAATGTTGAGTTTTCTTTTACTCTTACTCCCTCCGTCCCTTAATACTCGCACCGCTTTCCTTTTCGGGTCGTCCCTTAATACTTGCACCGTTTCTATAAATAGAAATTTTTATTACTATTATATTGTTTCTCACACTTACCTACTACCCCACCTACACCCCTATTATTTACAAAAAATTATTTAAAAATTCACATCCTCCACTCACCACTCCCCACCTCCACATTTCCCACTAACAATATTAAAAAAATACTCCACTATCAACTAACACCATTAAATTAATAAGTCAATTCAAATGTCTTAAACTCCGCACCGGTGCGAGTATTAAGGGACGGAGGGAGTATTATTTTTTGAAGTTAAGAATTTAAAATATTATTAAGTATAAGTACTAACGCTTATTGATTTGTCATTATATATTTCTATGCTTTTATTATGGATGTCCTTTTGAGTTTTTTTTTTCTTTTTTTATATACAAGGGTGTCTTTTGAGTTTTCACAATTTTAATACAAAGTACTAATATTGAATTAATGAGTCAATCAAAACCGAAAAATAAAGGGAAAAAAGATGGAGATGATGGGTAAGTAAACACATGTCACTATGGTTTGAGTTTTTAAATACAACAAGGTATAGATGGATAGGTTAACCACTAACCCCCTAATTAACCCACCCATTAACCCACTAACCCACCCATTTTCTTTTCCCTCTCCCCCTTCCTCCTTCCCTTGACCTATCGTCGAAAACCCAAGAAAATCAGTCGCTAGCGACCCCAACCATCTTCTTTCTCTCCTTCGTCCTCGTTGAACCCGAACCCGAACCCGAACCCAAACCTAAACCTCATTCCTCTTTATGTAGTTGAAACAGATGGTGATTTGGTGAGGAGAGATATGGAGTTTAGAGCAAGGATGAATTATATATGAGTGTGCCTAGTTTTTTCAGGTTGTCCAACCTCACTCGATATGATGAAATCTCCATTGAGTCTGTGTACCGGTGTTACCTACGACCGCACTAGCATCCAATGGTGCCTAGACACCGGCAACAACACGTGTCCTGCTACTATGCAGGTTCTACACACCACACCAAGGATGTTGTCCCTAATCATACCCTTCAACGACCCATTCAGGTCTGGTCCACCAACAACCACCACCCTTCTCATTCTCTCTCCTCTGCTCTCGTGTCCCGATGGCATTTTATTTGAGAGTGTTGTTGGCAGGGTGTTCAAAACAGATGGTAACTTGGTGAGGAAAGATGTTGAGTTGTGAGAGATTAGATGATGGGGACAGTGCCCACATCGAGTTCTTGTTGATGTTGTCGATCTCCATCATCTTCAAATCCCTCAACAATTAATCAAGAACATTAGGGAAATTCCTTCCCAGATGTTTTCAACTAGAGGAGAGAAAAAAAACGGGGAAGGGGAGAGGAGAGAAATTGGGCGGCGACGGCTGAAGGGCGGAGCTGGCAGGGGGCTCGCAGGGGTGGTGGTGGTGGTGGTGAAGGAAAGGGAAGGGGTTAGTGTGTGGTTAATTAGGGGGGGTTTAATGGGTGGGTCTATTAGATATTAATTTGGGGTTGATGACGTCATTAAGAGAATTTGGTGAATTTTATTGAATGTTAGGGGTATTTAGTGAATTTTGAAAAGTCGAGGGTTATTTAGTGAATTTTGTGAAAACTGAGGGATATTTGATGAAAACCGTTTGAACTTTTATTTCCTCCAATTAACCAAGTGTGTGCGAAAGTAAGTAACCAAACACTAATTTTCAATTGAAACATTTAGCTAAAATAAAATTTACAAGAGCTATTGACACAATACTGAAGATTGATTCATTTCTTGTCTGTGTTTCCGGTGCTATTATAAGATTCTGATTATAATTTTTTTTTTATGTTTTATTGTAGATAATGAGATAAATGGTGGTAAGGGAGAAGTTAATGTGATTCGCCCATTGTCTCCTCATCTTCTCATTTACCGGCCACAATCTAATTCCACCTTGTCGATTTTGCATAGAGTATCTGGAATGTACCTCACGGGTGCATATGTGTTGTTTTCCCTTGTTTATATGAAGATGGGTTCTATTTGCTTCAGCTATCCGAGTTTCTACCAGACAGTCTTTTATTCGTCAAAGCTCCATACAATATCTCTTGAGATTGCTGCCCTTGCTTTTTCTTATTATGTTTATCATGGAATAAGTCATAGGTCAATGGATGGGGTTCGACAGATTCTGCTTGATTATGTTCACCATGGAGTTACCCGGAATTATATCTTGGTCTTATGGAGCTTGTTCCTTGTAATCGTACTCAAGGATTATTGTGTGTATCTCACCCCTTTAAATTAAGTTATGTCTCAACATCTGCCATGGTGTAACTGAGCAACATTTTACCAATTTCATATTTAGGTGGAAAAGGGCATAATTGGGCTATATCAGTGTGCCAAACCTCTTGGAAAGTTGCTAGAGAATGACATTAATCTAGCAAATGACGAGTGAAAACTCAAATAAAATAAGGTTTGAGTTGTTATGCAACATTTGTAATGTTTATAATCTATTTCTTTTGAAGCCTCTCTTATGTAGTTATGAAAGATTTAAGAATGCTGTTACTTTGTGTTCTTCAGTCGGAGAAACAGAAACAGAAACAGGTCCATACTAACTGTATTCATAATTCTCGGTCAAGTTGCTTGTAAAATTGCAAGTTTGTCTCTTGCCTCGGATAAACTTTATTTTTTTTGGTGTTAACACCCGGTTCACCCTTAGGAGTAATCCGGATTTATGGCGAGTTCTGGGTGGATAGGTTTCAGTCCCCTCCTAATTGTTGTTGCGGGCGATCAAACACGAGTTCTCCCTACCAAGTTTAGCCCCAATCACTACTGAATTAACAGACAATTGGTTAAACTTTATCGCACACTATAAATTGGATGGTGGAGGACACGATAGTTTCCACTACTGCTACTGAGCAAACAAAGTATTTCAG

mRNA sequence

TCAAGTCTCAACGAGAGAAATAAAAAATAAGAATAGTTGGAGTTGGTGAAGCTCAGAATTCAATCTTTCAGATCATCGACAAAATGATGCTCTCTCGTATCGGGCGTTCAATCTCCAGATCTTCTCGCTCCTCGCTCTTCAATTCAACTCTTGGTAGTGACGGATACGGAGCAAGAATTGCAGGGATTGCCAATCAATCGGGCGGAATCGCACCACGCAGTACTGAACAAGGGCTAGGGTTTGTCAATGCTTATTTTTCGTCAACGGGCGCTGCTGGAAAACAGTCCGGTCCTTCGTTTTCGCCTGTTTCTCGGCCCGATTTCGCAAACTATAGCTTTGCTAGGTTCTTATCAAGTGATGTCCCAAAGAAATTAGATAATGAGATAAATGGTGGTAAGGGAGAAGTTAATGTGATTCGCCCATTGTCTCCTCATCTTCTCATTTACCGGCCACAATCTAATTCCACCTTGTCGATTTTGCATAGAGTATCTGGAATGTACCTCACGGGTGCATATGTGTTGTTTTCCCTTGTTTATATGAAGATGGGTTCTATTTGCTTCAGCTATCCGAGTTTCTACCAGACAGTCTTTTATTCGTCAAAGCTCCATACAATATCTCTTGAGATTGCTGCCCTTGCTTTTTCTTATTATGTTTATCATGGAATAAGTCATAGGTCAATGGATGGGGTTCGACAGATTCTGCTTGATTATGTTCACCATGGAGTTACCCGGAATTATATCTTGGTCTTATGGAGCTTGTTCCTTGTAATCGTACTCAAGGATTATTGTGTGTATCTCACCCCTTTAAATTAAGTTATGTCTCAACATCTGCCATGGTGTAACTGAGCAACATTTTACCAATTTCATATTTAGGTGGAAAAGGGCATAATTGGGCTATATCAGTGTGCCAAACCTCTTGGAAAGTTGCTAGAGAATGACATTAATCTAGCAAATGACGAGTGAAAACTCAAATAAAATAAGGTTTGAGTTGTTATGCAACATTTGTAATGTTTATAATCTATTTCTTTTGAAGCCTCTCTTATGTAGTTATGAAAGATTTAAGAATGCTGTTACTTTGTGTTCTTCAGTCGGAGAAACAGAAACAGAAACAGGTCCATACTAACTGTATTCATAATTCTCGGTCAAGTTGCTTGTAAAATTGCAAGTTTGTCTCTTGCCTCGGATAAACTTTATTTTTTTTGGTGTTAACACCCGGTTCACCCTTAGGAGTAATCCGGATTTATGGCGAGTTCTGGGTGGATAGGTTTCAGTCCCCTCCTAATTGTTGTTGCGGGCGATCAAACACGAGTTCTCCCTACCAAGTTTAGCCCCAATCACTACTGAATTAACAGACAATTGGTTAAACTTTATCGCACACTATAAATTGGATGGTGGAGGACACGATAGTTTCCACTACTGCTACTGAGCAAACAAAGTATTTCAG

Coding sequence (CDS)

ATGATGCTCTCTCGTATCGGGCGTTCAATCTCCAGATCTTCTCGCTCCTCGCTCTTCAATTCAACTCTTGGTAGTGACGGATACGGAGCAAGAATTGCAGGGATTGCCAATCAATCGGGCGGAATCGCACCACGCAGTACTGAACAAGGGCTAGGGTTTGTCAATGCTTATTTTTCGTCAACGGGCGCTGCTGGAAAACAGTCCGGTCCTTCGTTTTCGCCTGTTTCTCGGCCCGATTTCGCAAACTATAGCTTTGCTAGGTTCTTATCAAGTGATGTCCCAAAGAAATTAGATAATGAGATAAATGGTGGTAAGGGAGAAGTTAATGTGATTCGCCCATTGTCTCCTCATCTTCTCATTTACCGGCCACAATCTAATTCCACCTTGTCGATTTTGCATAGAGTATCTGGAATGTACCTCACGGGTGCATATGTGTTGTTTTCCCTTGTTTATATGAAGATGGGTTCTATTTGCTTCAGCTATCCGAGTTTCTACCAGACAGTCTTTTATTCGTCAAAGCTCCATACAATATCTCTTGAGATTGCTGCCCTTGCTTTTTCTTATTATGTTTATCATGGAATAAGTCATAGGTCAATGGATGGGGTTCGACAGATTCTGCTTGATTATGTTCACCATGGAGTTACCCGGAATTATATCTTGGTCTTATGGAGCTTGTTCCTTGTAATCGTACTCAAGGATTATTGTGTGTATCTCACCCCTTTAAATTAA

Protein sequence

MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSSTGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLEIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTPLN

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo02577	Spo02577	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo02577.1	Spo02577.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02577.1.utr5p.1	Spo02577.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02577.1.CDS.3	Spo02577.1.CDS.3	CDS
Spo02577.1.CDS.2	Spo02577.1.CDS.2	CDS
Spo02577.1.CDS.1	Spo02577.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02577.1.utr3p.1	Spo02577.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02577.1.exon.3	Spo02577.1.exon.3	exon
Spo02577.1.exon.2	Spo02577.1.exon.2	exon
Spo02577.1.exon.1	Spo02577.1.exon.1	exon

Homology

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BLAST of Spo02577.1 vs. NCBI nr
Match: gi|902231653|gb|KNA22349.1| (hypothetical protein SOVF_035040 [Spinacia oleracea])

HSP 1 Score: 468.4 bits (1204), Expect = 7.600e-129
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


		  
Query: 1   MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS 60
           MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS
Sbjct: 1   MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS 60

Query: 61  TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLI 120
           TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLI
Sbjct: 61  TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLI 120

Query: 121 YRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLE 180
           YRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLE
Sbjct: 121 YRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLE 180

Query: 181 IAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTP 240
           IAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTP
Sbjct: 181 IAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTP 240

Query: 241 LN 243
           LN
Sbjct: 241 LN 242

[Close]

BLAST of Spo02577.1 vs. NCBI nr
Match: gi|902177833|gb|KNA09031.1| (hypothetical protein SOVF_157430 [Spinacia oleracea])

HSP 1 Score: 414.8 bits (1065), Expect = 1.000e-112
Identity = 216/248 (87.10%), Postives = 226/248 (91.13%), Query Frame = 1


		  
Query: 1   MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS 60
           MMLSRIGRS SRSSRSSLFNSTLG DGYGAR+AGIANQSGGIAP +TEQGLGF+NAYFSS
Sbjct: 1   MMLSRIGRSFSRSSRSSLFNSTLGCDGYGARMAGIANQSGGIAPSNTEQGLGFLNAYFSS 60

Query: 61  TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNV------IRPL 120
            GAAGKQSGPSF P SRP FANYSFARFLSSD+  KLDNEI GGKGEVNV      +RPL
Sbjct: 61  IGAAGKQSGPSFLPASRPGFANYSFARFLSSDITNKLDNEIKGGKGEVNVDDHKNVLRPL 120

Query: 121 SPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKL 180
           SPHLLIYRPQSNSTLSILHRVSGMYLTGAY+LFSL YMKMGSICF+YPSFYQ VFYSSKL
Sbjct: 121 SPHLLIYRPQSNSTLSILHRVSGMYLTGAYLLFSLAYMKMGSICFTYPSFYQAVFYSSKL 180

Query: 181 HTISLEIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDY 240
           H ISLEIAALAFSYYVYHGI HRS+DGVRQIL+DYVHHGVTRNYILVLWSLFL+IVLKD 
Sbjct: 181 HLISLEIAALAFSYYVYHGIRHRSLDGVRQILVDYVHHGVTRNYILVLWSLFLIIVLKDS 240

Query: 241 CVYLTPLN 243
            VYLTPLN
Sbjct: 241 FVYLTPLN 248

[Close]

BLAST of Spo02577.1 vs. NCBI nr
Match: gi|731354808|ref|XP_010688798.1| (PREDICTED: succinate dehydrogenase cytochrome b560 subunit-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 287.0 bits (733), Expect = 3.200e-74
Identity = 159/243 (65.43%), Postives = 189/243 (77.78%), Query Frame = 1


		  
Query: 2   MLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSST 61
           M+SRIGR+ISRS+RSSL N+T+G DGYG R A IANQS G   RS EQGLGFVN+YFSS 
Sbjct: 3   MISRIGRNISRSARSSLLNATIGCDGYGIRTAAIANQSAGFTSRS-EQGLGFVNSYFSSI 62

Query: 62  GAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVN------VIRPLS 121
           GA GKQ+ PSFS V RP+FAN SFARF S+DV +K + EIN  KG++N      V+RPLS
Sbjct: 63  GA-GKQANPSFSSVFRPNFANPSFARFFSTDVAEKRNYEINVAKGDINDDDHKNVLRPLS 122

Query: 122 PHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLH 181
           PHLLIYRPQSNSTLSIL RVSGMYLTG  +LFSL  +KMGSIC +YPSFYQ VFYSSKL 
Sbjct: 123 PHLLIYRPQSNSTLSILTRVSGMYLTGISLLFSLGLLKMGSICLTYPSFYQAVFYSSKLT 182

Query: 182 TISLEIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYC 239
            +SLEIAALA   Y YHGISH + DG+++IL DY+H+ +TRN IL+ W L L+I + +  
Sbjct: 183 LVSLEIAALALGCYAYHGISHMTFDGMQKILTDYLHNDMTRNMILIGWRLLLLIAITEVV 242

[Close]

BLAST of Spo02577.1 vs. NCBI nr
Match: gi|661891451|emb|CDP05333.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 117.9 bits (294), Expect = 2.500e-23
Identity = 71/143 (49.65%), Postives = 82/143 (57.34%), Query Frame = 1


		  
Query: 58  FSSTGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPH 117
           FS   +     GP        D  N         DV  K+D          NV RPLSPH
Sbjct: 72  FSEYSSVASGVGPGSEAKETGDGLNLRVTGKEDDDVSPKVDTR-------KNVFRPLSPH 131

Query: 118 LLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTI 177
           L IY+PQ NST+SIL+R+SG+YL+   + F L  MKMGSICFSY SFYQ  FYSSKL  I
Sbjct: 132 LPIYQPQVNSTMSILNRISGVYLSALVLSFYLASMKMGSICFSYGSFYQFFFYSSKLSLI 191

Query: 178 SLEIAALAFSYYVYHGISHRSMD 201
           S EIAALA  Y+VY G+ H  MD
Sbjct: 192 SAEIAALALFYHVYAGVRHLLMD 207

[Close]

BLAST of Spo02577.1 vs. NCBI nr
Match: gi|927682219|gb|ALE29231.1| (succinate dehydrogenase subunit 3 (mitochondrion) [Heuchera parviflora var. saurensis])

HSP 1 Score: 107.1 bits (266), Expect = 4.500e-20
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1


		  
Query: 108 VNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQT 167
           +N +RPLSPHL IY+PQ  ST  I HR+SG +L    +LF L+ +KMG ICF+Y +FYQ 
Sbjct: 6   MNRLRPLSPHLPIYKPQLTSTFPISHRISGAFLATIVLLFDLICLKMGLICFTYANFYQF 65

Query: 168 VFYSSKLHTISLEIAALAFSYYVYHGISH 197
           +FYSSKL  IS+EI ALA SY++YHG+ H
Sbjct: 66  LFYSSKLILISVEITALALSYHLYHGVRH 94

[Close]

BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTV3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_035040 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 5.300e-129
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 1


		  
Query: 1   MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS 60
           MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS
Sbjct: 1   MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS 60

Query: 61  TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLI 120
           TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLI
Sbjct: 61  TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPHLLI 120

Query: 121 YRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLE 180
           YRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLE
Sbjct: 121 YRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLE 180

Query: 181 IAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTP 240
           IAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTP
Sbjct: 181 IAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYCVYLTP 240

Query: 241 LN 243
           LN
Sbjct: 241 LN 242

[Close]

BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR71_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157430 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 7.000e-113
Identity = 216/248 (87.10%), Postives = 226/248 (91.13%), Query Frame = 1


		  
Query: 1   MMLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSS 60
           MMLSRIGRS SRSSRSSLFNSTLG DGYGAR+AGIANQSGGIAP +TEQGLGF+NAYFSS
Sbjct: 1   MMLSRIGRSFSRSSRSSLFNSTLGCDGYGARMAGIANQSGGIAPSNTEQGLGFLNAYFSS 60

Query: 61  TGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNV------IRPL 120
            GAAGKQSGPSF P SRP FANYSFARFLSSD+  KLDNEI GGKGEVNV      +RPL
Sbjct: 61  IGAAGKQSGPSFLPASRPGFANYSFARFLSSDITNKLDNEIKGGKGEVNVDDHKNVLRPL 120

Query: 121 SPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKL 180
           SPHLLIYRPQSNSTLSILHRVSGMYLTGAY+LFSL YMKMGSICF+YPSFYQ VFYSSKL
Sbjct: 121 SPHLLIYRPQSNSTLSILHRVSGMYLTGAYLLFSLAYMKMGSICFTYPSFYQAVFYSSKL 180

Query: 181 HTISLEIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDY 240
           H ISLEIAALAFSYYVYHGI HRS+DGVRQIL+DYVHHGVTRNYILVLWSLFL+IVLKD 
Sbjct: 181 HLISLEIAALAFSYYVYHGIRHRSLDGVRQILVDYVHHGVTRNYILVLWSLFLIIVLKDS 240

Query: 241 CVYLTPLN 243
            VYLTPLN
Sbjct: 241 FVYLTPLN 248

[Close]

BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRS3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g203710 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.200e-74
Identity = 159/243 (65.43%), Postives = 189/243 (77.78%), Query Frame = 1


		  
Query: 2   MLSRIGRSISRSSRSSLFNSTLGSDGYGARIAGIANQSGGIAPRSTEQGLGFVNAYFSST 61
           M+SRIGR+ISRS+RSSL N+T+G DGYG R A IANQS G   RS EQGLGFVN+YFSS 
Sbjct: 3   MISRIGRNISRSARSSLLNATIGCDGYGIRTAAIANQSAGFTSRS-EQGLGFVNSYFSSI 62

Query: 62  GAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVN------VIRPLS 121
           GA GKQ+ PSFS V RP+FAN SFARF S+DV +K + EIN  KG++N      V+RPLS
Sbjct: 63  GA-GKQANPSFSSVFRPNFANPSFARFFSTDVAEKRNYEINVAKGDINDDDHKNVLRPLS 122

Query: 122 PHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLH 181
           PHLLIYRPQSNSTLSIL RVSGMYLTG  +LFSL  +KMGSIC +YPSFYQ VFYSSKL 
Sbjct: 123 PHLLIYRPQSNSTLSILTRVSGMYLTGISLLFSLGLLKMGSICLTYPSFYQAVFYSSKLT 182

Query: 182 TISLEIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLWSLFLVIVLKDYC 239
            +SLEIAALA   Y YHGISH + DG+++IL DY+H+ +TRN IL+ W L L+I + +  
Sbjct: 183 LVSLEIAALALGCYAYHGISHMTFDGMQKILTDYLHNDMTRNMILIGWRLLLLIAITEVV 242

[Close]

BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A068UCG8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020337001 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.800e-23
Identity = 71/143 (49.65%), Postives = 82/143 (57.34%), Query Frame = 1


		  
Query: 58  FSSTGAAGKQSGPSFSPVSRPDFANYSFARFLSSDVPKKLDNEINGGKGEVNVIRPLSPH 117
           FS   +     GP        D  N         DV  K+D          NV RPLSPH
Sbjct: 72  FSEYSSVASGVGPGSEAKETGDGLNLRVTGKEDDDVSPKVDTR-------KNVFRPLSPH 131

Query: 118 LLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTI 177
           L IY+PQ NST+SIL+R+SG+YL+   + F L  MKMGSICFSY SFYQ  FYSSKL  I
Sbjct: 132 LPIYQPQVNSTMSILNRISGVYLSALVLSFYLASMKMGSICFSYGSFYQFFFYSSKLSLI 191

Query: 178 SLEIAALAFSYYVYHGISHRSMD 201
           S EIAALA  Y+VY G+ H  MD
Sbjct: 192 SAEIAALALFYHVYAGVRHLLMD 207

[Close]

BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Match: A0A0M4MES9_9MAGN (Succinate dehydrogenase subunit 3 OS=Heuchera parviflora var. saurensis GN=sdh3 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.100e-20
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1


		  
Query: 108 VNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQT 167
           +N +RPLSPHL IY+PQ  ST  I HR+SG +L    +LF L+ +KMG ICF+Y +FYQ 
Sbjct: 6   MNRLRPLSPHLPIYKPQLTSTFPISHRISGAFLATIVLLFDLICLKMGLICFTYANFYQF 65

Query: 168 VFYSSKLHTISLEIAALAFSYYVYHGISH 197
           +FYSSKL  IS+EI ALA SY++YHG+ H
Sbjct: 66  LFYSSKLILISVEITALALSYHLYHGVRH 94

[Close]

BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Match: SDH31_ARATH (Succinate dehydrogenase subunit 3-1, mitochondrial OS=Arabidopsis thaliana GN=SDH3-1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-15
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1


		  
Query: 87  RFLSSDVPKKLDNEINGG------KGEVNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYL 146
           R L     K+L + I+G       + ++   RPLSPHL +Y+PQ NS LSI +R+SG+YL
Sbjct: 94  RALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYL 153

Query: 147 TGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLEIAALAFSYY 190
           TG      L+Y+KMG IC +YPSFYQ ++++ +   +   + ALA  Y+
Sbjct: 154 TGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

[Close]

BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Match: SDH32_ARATH (Succinate dehydrogenase subunit 3-2, mitochondrial OS=Arabidopsis thaliana GN=SDH3-2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.100e-15
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1


		  
Query: 87  RFLSSDVPKKLDNEINGG------KGEVNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYL 146
           R L     K+L + I+G       + ++   RPLSPHL +Y+PQ NS LSI +R+SG+YL
Sbjct: 94  RALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYL 153

Query: 147 TGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLEIAALAFSYY 190
           TG      L+Y+KMG IC +YPSFYQ ++++ +   +   + ALA  Y+
Sbjct: 154 TGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

[Close]

BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Match: C560_MARPO (Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia polymorpha GN=SDH3 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.600e-9
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 1


		  
Query: 108 VNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYLTGAYVLFSLVYMKMGSICFSYPSFYQT 167
           + + RPLSPHL IY+PQ  ST SI HR+SG +L    VLFS+++ K+G +  ++  FYQ 
Sbjct: 1   MKINRPLSPHLTIYKPQLTSTFSIFHRISGAFL-ATMVLFSILFFKIGDLSLTFYHFYQY 60

Query: 168 VFYSS---KLHTISL-EIAALAFSYYVYHGISHRSMDGVRQILLDYVHHGVTRNYILVLW 227
            F+ +       ISL     LA  Y++ +G+ H   D    + L  V+   T   I++  
Sbjct: 61  FFFLTFYLNWFIISLVNFTLLALCYHMSNGVRHLLWDLGFFLELSKVY---TSGIIMLFC 120

Query: 228 SLFLVIV 231
           + FL ++
Sbjct: 121 AAFLALL 123

[Close]

BLAST of Spo02577.1 vs. TAIR (Arabidopsis)
Match: AT4G32210.1 (succinate dehydrogenase 3-2)

HSP 1 Score: 85.1 bits (209), Expect = 6.400e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1


		  
Query: 87  RFLSSDVPKKLDNEINGG------KGEVNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYL 146
           R L     K+L + I+G       + ++   RPLSPHL +Y+PQ NS LSI +R+SG+YL
Sbjct: 94  RALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYL 153

Query: 147 TGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLEIAALAFSYY 190
           TG      L+Y+KMG IC +YPSFYQ ++++ +   +   + ALA  Y+
Sbjct: 154 TGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

[Close]

BLAST of Spo02577.1 vs. TAIR (Arabidopsis)
Match: AT5G09600.1 (succinate dehydrogenase 3-1)

HSP 1 Score: 85.1 bits (209), Expect = 6.400e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1


		  
Query: 87  RFLSSDVPKKLDNEINGG------KGEVNVIRPLSPHLLIYRPQSNSTLSILHRVSGMYL 146
           R L     K+L + I+G       + ++   RPLSPHL +Y+PQ NS LSI +R+SG+YL
Sbjct: 94  RALDVGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLSIFNRISGVYL 153

Query: 147 TGAYVLFSLVYMKMGSICFSYPSFYQTVFYSSKLHTISLEIAALAFSYY 190
           TG      L+Y+KMG IC +YPSFYQ ++++ +   +   + ALA  Y+
Sbjct: 154 TGVTFAGYLLYLKMGMICLTYPSFYQVLYHTQQQLPVITSVTALAAIYH 202

The following BLAST results are available for this feature:

BLAST of Spo02577.1 vs. NCBI nr
BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
BLAST of Spo02577.1 vs. TAIR (Arabidopsis)

BLAST of Spo02577.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231653\|gb\|KNA22349.1\|	7.6e-129	100.	hypothetical protein SOVF_0350...	[more]
gi\|902177833\|gb\|KNA09031.1\|	1.0e-112	87.1	hypothetical protein SOVF_1574...	[more]
gi\|731354808\|ref\|XP_010688798.1\|	3.2e-74	65.4	PREDICTED: succinate dehydroge...	[more]
gi\|661891451\|emb\|CDP05333.1\|	2.5e-23	49.6	unnamed protein product [Coffe...	[more]
gi\|927682219\|gb\|ALE29231.1\|	4.5e-20	58.4	succinate dehydrogenase subuni...	[more]

BLAST of Spo02577.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RTV3_SPIOL	5.3e-129	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QR71_SPIOL	7.0e-113	87.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8BRS3_BETVU	2.2e-74	65.4	Uncharacterized protein OS=Bet...	[more]
A0A068UCG8_COFCA	1.8e-23	49.6	Uncharacterized protein OS=Cof...	[more]
A0A0M4MES9_9MAGN	3.1e-20	58.4	Succinate dehydrogenase subuni...	[more]

BLAST of Spo02577.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
SDH31_ARATH	1.1e-15	41.2	Succinate dehydrogenase subuni...	[more]
SDH32_ARATH	1.1e-15	41.2	Succinate dehydrogenase subuni...	[more]
C560_MARPO	4.6e-9	35.4	Succinate dehydrogenase cytoch...	[more]

BLAST of Spo02577.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G32210.1	6.4e-17	41.2	succinate dehydrogenase 3-2	[more]
AT5G09600.1	6.4e-17	41.2	succinate dehydrogenase 3-1	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000701	Succinate dehydrogenase/Fumarate reductase, transmembrane subunit	PFAM	PF01127	Sdh_cyt	coord: 112..230 score: 1.0
None	No IPR available	GENE3D	1.20.1300.10		coord: 112..228 score: 7.0
None	No IPR available	PANTHER	PTHR10978	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT	coord: 112..194 score: 5.0
None	No IPR available	PANTHER	PTHR10978:SF5	SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIAL	coord: 112..194 score: 5.0
None	No IPR available	unknown	SSF81343	Fumarate reductase respiratory complex transmembrane subunits	coord: 107..230 score: 2.16

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0016020	membrane
molecular_function	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors