Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTCAAAATAAGTCATCAAATAAAAAACAATTCAATCTGTATTTGATTAATCTGGTTAATGGCTATCTCTTCTGATAGCCGAGTTTACAGCTGCAACAGCTGCTGGAATCCTGTTGCCTCTAAAGAAGACCTTATTTCTAAGGCTTATGTGGTGAGTTCCTTGCTCTGTTGAAAGGACAGTTTATTCGGTTAGCATGTTCTCAATATGATTTACTCACTATAGAAGTTATTTTGATCTGATCTGATCTGATCTGATCTGATCTGATTTGACTTGAAATTATTTATTCTGATATGATAAGAAGAAAAGTAACAAGGGTCCTGAAATGAAGTGAATCAAACGACGCTTAAGTATTGCACAAGTTTCCTATTTTGTGTCTCGTTTGATGATGTGGCAAAAGTAAAGGTTATACGTTACCGCACATGCTATGTAGTATACTAGTATGTACATGAGACAAAACATAGTACTCCGTATGATTTTATGTTTACATAGTACTCCATATGATTTTATGTTTGTGGGTTTTTTAAAGGAAAGAAAAACATGGTTAAACTCTTTGAGAAGGGCAACTTAAAGTTAACTTTCTTTTTGCTACCATAAAATTAGTTGTTTGATTAACCTCCCTGTAAGGCTGTAACCATTGTTGGTAACAAATTTGTCGATGTTGGAAGTCCGTCAAGGAGACTTCGAACAAAACTATTAATTTTCCACGAGACCTGCCACAAATGATTCATGGAATTGGTCTGATGTAGTTATGTGTTAATATTATGACAATGATTGTCATATTACCGGGTTAAATAATTGACTATTAATTTTGGTGGGATTAATTAATACTTGTATTTTTTATCAAGGTAATTTGTTATTTAAAAAGGTAGGTTAGATAAGGTCGTATCGAGTCACAACCCCTCTCCAGTCAGTTCTCGCTGAATCAGCAGACTAGACACTTTTAAATGATTAATATCTATTTATGCTCCATTATTTGACTTTTCCATACGGTTGTGGAGTTGTGGTTCAGGCATTATCTGGACAAGCCTTCATGTTTAGTAACGCAATGAATATGAAGGTGGGCAACAAGATTGAGAAGCAACTAATGACTGGGAAATTCACAGTGGCTGATATATATTGCATCAAATGTGGGCAGCTTTTGGGCTGGAAATATTTCCGAGCCCATGACCCAAGACAGTCATACAAGGAAGGCAACTACGTACTCGAACGTGCTAAGCTACTCAAAGGAAACTAAACCAAATTAAGCTTTATAAGTTCCTACTCCGATCTTTGATCCGTCCCTTAATATTTGTCTCATTTAGCGTATTCCTATAACATGTGCGAATTATTAAAAAAAAGTTGTATAAAAACGTATATGAGACAAAAATTAAAGATCAGGGTACTATTATTTTTTGAAGGGGTCTGAGGTTAATGCTTAATGATTTCAGGTATACTTTTGTGACAGGTTTGTCCGTATTGCATCTAAATGAAGCTTATTAAAACTTAAAATGAATGGTGATATAAAAAAGTTA CTCAAAATAAGTCATCAAATAAAAAACAATTCAATCTGTATTTGATTAATCTGGTTAATGGCTATCTCTTCTGATAGCCGAGTTTACAGCTGCAACAGCTGCTGGAATCCTGTTGCCTCTAAAGAAGACCTTATTTCTAAGGCTTATGTGGCATTATCTGGACAAGCCTTCATGTTTAGTAACGCAATGAATATGAAGGTGGGCAACAAGATTGAGAAGCAACTAATGACTGGGAAATTCACAGTGGCTGATATATATTGCATCAAATGTGGGCAGCTTTTGGGCTGGAAATATTTCCGAGCCCATGACCCAAGACAGTCATACAAGGAAGGCAACTACGTACTCGAACGTGCTAAGCTACTCAAAGGAAACTAAACCAAATTAAGCTTTATAAGTTCCTACTCCGATCTTTGATCCGTCCCTTAATATTTGTCTCATTTAGCGTATTCCTATAACATGTGCGAATTATTAAAAAAAAGTTGTATAAAAACGTATATGAGACAAAAATTAAAGATCAGGGTACTATTATTTTTTGAAGGGGTCTGAGGTTAATGCTTAATGATTTCAGGTATACTTTTGTGACAGGTTTGTCCGTATTGCATCTAAATGAAGCTTATTAAAACTTAAAATGAATGGTGATATAAAAAAGTTA ATGGCTATCTCTTCTGATAGCCGAGTTTACAGCTGCAACAGCTGCTGGAATCCTGTTGCCTCTAAAGAAGACCTTATTTCTAAGGCTTATGTGGCATTATCTGGACAAGCCTTCATGTTTAGTAACGCAATGAATATGAAGGTGGGCAACAAGATTGAGAAGCAACTAATGACTGGGAAATTCACAGTGGCTGATATATATTGCATCAAATGTGGGCAGCTTTTGGGCTGGAAATATTTCCGAGCCCATGACCCAAGACAGTCATACAAGGAAGGCAACTACGTACTCGAACGTGCTAAGCTACTCAAAGGAAACTAA MAISSDSRVYSCNSCWNPVASKEDLISKAYVALSGQAFMFSNAMNMKVGNKIEKQLMTGKFTVADIYCIKCGQLLGWKYFRAHDPRQSYKEGNYVLERAKLLKGN Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo02607.1 vs. NCBI nr
Match: gi|902224182|gb|KNA19702.1| (hypothetical protein SOVF_058870 [Spinacia oleracea]) HSP 1 Score: 219.5 bits (558), Expect = 2.700e-54 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
BLAST of Spo02607.1 vs. NCBI nr
Match: gi|731321488|ref|XP_010671381.1| (PREDICTED: protein yippee-like At4g27740 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 177.2 bits (448), Expect = 1.500e-41 Identity = 80/102 (78.43%), Postives = 93/102 (91.18%), Query Frame = 1
BLAST of Spo02607.1 vs. NCBI nr
Match: gi|870864882|gb|KMT15949.1| (hypothetical protein BVRB_3g051320 isoform B [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 140.2 bits (352), Expect = 2.100e-30 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
BLAST of Spo02607.1 vs. NCBI nr
Match: gi|698477166|ref|XP_009785820.1| (PREDICTED: protein yippee-like At4g27740 [Nicotiana sylvestris]) HSP 1 Score: 129.4 bits (324), Expect = 3.600e-27 Identity = 55/95 (57.89%), Postives = 77/95 (81.05%), Query Frame = 1
BLAST of Spo02607.1 vs. NCBI nr
Match: gi|697132447|ref|XP_009620272.1| (PREDICTED: protein yippee-like At4g27740 [Nicotiana tomentosiformis]) HSP 1 Score: 129.0 bits (323), Expect = 4.800e-27 Identity = 55/95 (57.89%), Postives = 77/95 (81.05%), Query Frame = 1
BLAST of Spo02607.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLK4_SPIOL (Protein yippee-like OS=Spinacia oleracea GN=SOVF_058870 PE=3 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 1.900e-54 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
BLAST of Spo02607.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CVF4_BETVU (Protein yippee-like OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051320 PE=3 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.100e-41 Identity = 80/102 (78.43%), Postives = 93/102 (91.18%), Query Frame = 1
BLAST of Spo02607.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CV65_BETVU (Protein yippee-like OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051320 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.400e-30 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
BLAST of Spo02607.1 vs. UniProtKB/TrEMBL
Match: M1BL62_SOLTU (Protein yippee-like OS=Solanum tuberosum GN=PGSC0003DMG400018517 PE=3 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 1.600e-26 Identity = 54/95 (56.84%), Postives = 76/95 (80.00%), Query Frame = 1
BLAST of Spo02607.1 vs. UniProtKB/TrEMBL
Match: K4BI48_SOLLC (Protein yippee-like OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 1.600e-26 Identity = 53/95 (55.79%), Postives = 77/95 (81.05%), Query Frame = 1
BLAST of Spo02607.1 vs. ExPASy Swiss-Prot
Match: YIPL5_ARATH (Protein yippee-like At4g27740 OS=Arabidopsis thaliana GN=At4g27740 PE=3 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 9.000e-26 Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1
BLAST of Spo02607.1 vs. ExPASy Swiss-Prot
Match: YIPL6_ARATH (Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2) HSP 1 Score: 111.7 bits (278), Expect = 4.900e-24 Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 1
BLAST of Spo02607.1 vs. ExPASy Swiss-Prot
Match: YIPL1_ARATH (Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2) HSP 1 Score: 102.4 bits (254), Expect = 3.000e-21 Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
BLAST of Spo02607.1 vs. ExPASy Swiss-Prot
Match: YIPL3_ARATH (Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 5.600e-20 Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
BLAST of Spo02607.1 vs. ExPASy Swiss-Prot
Match: YIPL_SOLTU (Protein yippee-like OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 5.600e-20 Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 1
BLAST of Spo02607.1 vs. TAIR (Arabidopsis)
Match: AT4G27740.1 (Yippee family putative zinc-binding protein) HSP 1 Score: 117.5 bits (293), Expect = 5.100e-27 Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1
BLAST of Spo02607.1 vs. TAIR (Arabidopsis)
Match: AT4G27745.1 (Yippee family putative zinc-binding protein) HSP 1 Score: 111.7 bits (278), Expect = 2.800e-25 Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 1
BLAST of Spo02607.1 vs. TAIR (Arabidopsis)
Match: AT2G40110.1 (Yippee family putative zinc-binding protein) HSP 1 Score: 107.1 bits (266), Expect = 6.800e-24 Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = 1
BLAST of Spo02607.1 vs. TAIR (Arabidopsis)
Match: AT3G08990.1 (Yippee family putative zinc-binding protein) HSP 1 Score: 102.4 bits (254), Expect = 1.700e-22 Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
BLAST of Spo02607.1 vs. TAIR (Arabidopsis)
Match: AT3G11230.2 (Yippee family putative zinc-binding protein) HSP 1 Score: 98.2 bits (243), Expect = 3.200e-21 Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02607.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02607.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02607.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo02607.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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