Spo02847.1 (mRNA)

Overview
NameSpo02847.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 72620036 .. 72621726 (-)
Sequence length613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTCTGTAAATCTTAGTTTGGCTTGTGATCATCAATTTGTCAATGTCATCCTTGTCTTTTCCCTCTGTAATCTTGGCTTCGACATACACAGGTAACTTGGAAAAGGTGTTTACGATTGTAAGTTGGCTACTGTTTGATCTTTTTTCTGTTTTATTGTTTCACATGAATTAGAACTTCAGTGACCATGATCCTACCAGAATGCACATTCAGAATATGTTCTGTACTATGGCATAAAAGAAGTACAACAGAAAGTCACATTTTTTTTACTGAAGAATCTTTACTCCAACTTGAAGAACTAACATATTGGAGTATACTCAAGGTTAGGTAGTAAAATTATAATCTTTACTTTCTCCAATTTATAAATGAGAAACCAAATGATTGCTTATATCGTCTTCACATGTCTTATTGCAATCAATCTTCTTGTCGTAGTTTCTGTAGAACCATTTGATGGCCTGGATGTTTGTTATAAATGTGGTGATTATCTTCACTACCTTGTACTATAAATATTATGGTTTCATGGATTCTTATCCTTTGGTATTGTATGTAGTCAAAGTAGAAGACATGTCAAACAAATGGGCCTTCATATTGGTTCATGTGGATAAGATATGATTCTATTTCGCATATGATTCTATCTTAGTTATTCTGTTTGTTAATTTTTGGAAGTATATTTTGTAGCTTTTCTTAAAATCTTTATAGGTTGTCTTCTTTTCACTAGTAGTATCTAATTTATGCAATATAGAAATCCTGAACGTTGGTTTCTTTCTTTGTAGACCATTCTAGGTATAGGGCCTTGAATTGGCAAGTTGTTAGACCGTGCAAATCAACCCAACTTCTGTTTTGTTTAGGGAAAAATAAGACTGCATAATATTCTATGAACTGATCTGAACTACATCTGTGATGTTACTAGAATTGACCTCATCTAGTTGGCAGAGTTGGCTCCTGATTTTTATGCATGGTTCTTTGTCTGTGATGATATGCATTTCATAGTTTAGTTTTACAGTCGTGTGTATTTTTTTGTTTTCAAGAGCATCATCAGATCTGCAACTAGTCGGTTTTTTCTCGTGTCTGTTGTGCCTGTCCGTGGTTTTCTCCCATGTATGTGTGCCAGAACTTTGTTGTTTGTTTGAGCATTTTTAAAGAGTTGTAAAGCCAAAATCCTACCAAAATTCTAGCATAATCCATTTACCAAAGGAGGTGTATTGTTAGTATTTTTGTAAAACTTATATATTTGTTTCATATATATCGCAAAGTTTGTATTTTTCAGTAGCTGATCTTTCACCTTATTCTTTGTTTCTTATAAATGTGAGATGTAACCAGGATGGTTGTGAAGCTGATCTGCCAGATGCTTTTTGAGAGGTCTTTCTTCGGCTCATCTTCCTGGGAGATCTCAGATTGTCCCTAAACCTTATCTACCATTGTAGTTTTATTTATTTTTGAAGTATTTTAATGTTTTGGACAACTTGTGAGAGCTATGTCGTTTTAGGATGATTTTGATTGGTTAATAATTTTGTATTGTTTATTGGTTATATTTCGAGGTAATTGAATACTTATTCGGTTGTGATCGATTGCTTATTATTGGGACCAAATGGTTAGCGCTTTAGAGATATATGATGGTGATGTGTGGTGTACTAAATTGCCTCATTGGTCATGGAGGTGTTATTCCCTCTTTTTTAAAAATTAAAAAAAC

mRNA sequence

ATGCCCTCTGTAAATCTTAGTTTGGCTTGTGATCATCAATTTGTCAATGTCATCCTTGTCTTTTCCCTCTGTAATCTTGGCTTCGACATACACAGAACTTCAGTGACCATGATCCTACCAGAATGCACATTCAGAATATGTTCTGTACTATGGCATAAAAGAAGTACAACAGAAAGTCACATTTTTTTTACTGAAGAATCTTTACTCCAACTTGAAGAACTAACATATTGGAGTATACTCAAGGATGGTTGTGAAGCTGATCTGCCAGATGCTTTTTGAGAGGTCTTTCTTCGGCTCATCTTCCTGGGAGATCTCAGATTGTCCCTAAACCTTATCTACCATTGTAGTTTTATTTATTTTTGAAGTATTTTAATGTTTTGGACAACTTGTGAGAGCTATGTCGTTTTAGGATGATTTTGATTGGTTAATAATTTTGTATTGTTTATTGGTTATATTTCGAGGTAATTGAATACTTATTCGGTTGTGATCGATTGCTTATTATTGGGACCAAATGGTTAGCGCTTTAGAGATATATGATGGTGATGTGTGGTGTACTAAATTGCCTCATTGGTCATGGAGGTGTTATTCCCTCTTTTTTAAAAATTAAAAAAAC

Coding sequence (CDS)

ATGCCCTCTGTAAATCTTAGTTTGGCTTGTGATCATCAATTTGTCAATGTCATCCTTGTCTTTTCCCTCTGTAATCTTGGCTTCGACATACACAGAACTTCAGTGACCATGATCCTACCAGAATGCACATTCAGAATATGTTCTGTACTATGGCATAAAAGAAGTACAACAGAAAGTCACATTTTTTTTACTGAAGAATCTTTACTCCAACTTGAAGAACTAACATATTGGAGTATACTCAAGGATGGTTGTGAAGCTGATCTGCCAGATGCTTTTTGA

Protein sequence

MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESHIFFTEESLLQLEELTYWSILKDGCEADLPDAF
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo02847Spo02847gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo02847.1Spo02847.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02847.1.CDS.3Spo02847.1.CDS.3CDS
Spo02847.1.CDS.2Spo02847.1.CDS.2CDS
Spo02847.1.CDS.1Spo02847.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02847.1.utr3p.1Spo02847.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02847.1.exon.3Spo02847.1.exon.3exon
Spo02847.1.exon.2Spo02847.1.exon.2exon
Spo02847.1.exon.1Spo02847.1.exon.1exon


Homology
[Close]
BLAST of Spo02847.1 vs. NCBI nr
Match: gi|902218747|gb|KNA18123.1| (hypothetical protein SOVF_073650 isoform A [Spinacia oleracea])

HSP 1 Score: 193.4 bits (490), Expect = 1.800e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60

Query: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 93
          IFFTEESLLQLEELTYWSILKDGCEADLPDAF
Sbjct: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 92
[Close]
BLAST of Spo02847.1 vs. NCBI nr
Match: gi|902218748|gb|KNA18124.1| (hypothetical protein SOVF_073650 isoform B [Spinacia oleracea])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-9
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMI 39
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHR  V +I
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRMVVKLI 38
[Close]
BLAST of Spo02847.1 vs. NCBI nr
Match: gi|902218749|gb|KNA18125.1| (hypothetical protein SOVF_073650 isoform C [Spinacia oleracea])

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-8
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 

		  

Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 32
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 31
[Close]
BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF62_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073650 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.300e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

		  

Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMILPECTFRICSVLWHKRSTTESH 60

Query: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 93
          IFFTEESLLQLEELTYWSILKDGCEADLPDAF
Sbjct: 61 IFFTEESLLQLEELTYWSILKDGCEADLPDAF 92
[Close]
BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGP1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073650 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.200e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 

		  

Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRTSVTMI 39
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIHR  V +I
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIHRMVVKLI 38
[Close]
BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF79_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073650 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 

		  

Query: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 32
          MPSVNLSLACDHQFVNVILVFSLCNLGFDIH
Sbjct: 1  MPSVNLSLACDHQFVNVILVFSLCNLGFDIH 31
The following BLAST results are available for this feature:
BLAST of Spo02847.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902218747|gb|KNA18123.1|1.8e-46100.hypothetical protein SOVF_0736... [more]
gi|902218748|gb|KNA18124.1|1.0e-989.4hypothetical protein SOVF_0736... [more]
gi|902218749|gb|KNA18125.1|1.9e-8100.hypothetical protein SOVF_0736... [more]
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BLAST of Spo02847.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RF62_SPIOL1.3e-46100.Uncharacterized protein OS=Spi... [more]
A0A0K9RGP1_SPIOL7.2e-1089.4Uncharacterized protein OS=Spi... [more]
A0A0K9RF79_SPIOL1.4e-8100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo02847.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02847.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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