Spo03116.1 (mRNA)

Overview
NameSpo03116.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_102 : 483368 .. 485495 (-)
Sequence length1036
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAACTTTTTAATTCCCCGCTTCAGCTCCTTCCCCTTCACTGGTTCGCTGCTCCTTCCCCTTCACTGGTTCGCTGCTTTGATTTTGTTTTCATTTTCCCACTTTTCCTCCTTCCTCTCTCTGGTTCTATGCGCCTTCCCTTTCTTTGGATTCTAACAAGGTTGTTGTTTCCCCACCGTCGTGGCGCCGTCGTTACTGCCTCCTCACGAACTGGTAATCTCCTTAACTCACTTCATTAATTAGATTGAATAAAATAAACATCCCCAATTGGGCAAACCCTAGCCATTTCAATTGATTTTCTCCCTCCTTTTGTTGTTGTACGACGAGCACTCCACCGCCGACGTCGTTGTTGACATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGGTGAGCTTGCTAGGAGTGGCTATCAATTTTTCAGCGAGTCACTAAGCACTTTCTCTATTACTCGATTTATTTTGTATGCTCTTCTTACTCAAATTTTACATTCCTTCTAATAATGAATATATTGGGTTCTGTTTGGCCTTTTTCCAGTGATTTGCTTCGTTTGGGTTACATAAATCCTCTTGTTTTATTTCATTATATCAATTGAGGCATTTTTCAAAGATTTTCGATTGAGTTATTGTGAAAATTTATGATCTAGTAGGTAGTCATATGATTGTTACCGAGGAGAAAACATACTTAATTATCATTTCTTGAATGATTTTGCATTACATTTTAAATCCTGTTAAAAATTGGGAATTACATGAAATTGGTTGATAAAAAATGTCATGTTTGCGTCTCCCTCCTGGTATTTGATGTTAATTACACTTGTTAGTGAAAAGGCCCGTTTGTTGTGTTTTATAGGACTCTATTTGACCTTTACCTCCTTGAAAACATAAGTGATGATGGAATCTACCTTCTTGAAAATGGCATGGATGATTTAATTTATATAGGCTTTAATTTAATGAGATACGACGTCATATTTACGGTACACCTACAAGTTCTCTTGATTTTTAAAGACAAATGTGCATAATCTATGTCGTGAAATGTCATTAATTACTAACAATTACCTTCTTGCAGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGGTAACATGCCAGACTTTCTATCTAGCGATTAGGTTAATATAAATTTGGATATATGTAGCTTACCCTATACACACATTCTCGTATAAGTATTGCTTGTTTGTGTGAGCATACATTCACATATATGTAGGTCTGCGGTGTGATCAATTTGTACCAATTTGTACCGCACATTCTCGTATAAGTATTGCTTGTTTGTGTGAAAATACACTCATATAATGATTGATCTCTTCTTATCAATTAAGCTAGTGGTGTGAAAAAATCTCCTGCTAGTAAGTGTTACAACAAGGCTTCTGGCTAGCAAATATGAAAAGGTCTCAGCTCCGGTTGTTGAAGATCTAGTACTGATATATAACAGGGATTAGAGTAGGCAAGAAGTTCTTGACATGGTAAGCATCTACAGATTGGTATTATCAGTGTTGTACATTCTACACTACAAGCAAAAGTAACACTAATTTCTTCTATGTCCTATGACAGGAGAGACTGATGATGGACTCCTTACAATTCAATTTGTCGGTTCCCACCCATATGTCTTCATGAAACTATACCTTAAAGCAGCTGAAGAATAGACAAAGAAGTAAGTTTTATTGACCCTTCGAACTCCTGTCATTCTGATTGAGCTTTGCCCGATTGAGCATGAAATGCCGAGGTTCCCACCTTCTCTATTAGCAGCAGCTGCAGTATTCAGTGTTATTTGCACTGTGATTTGCACTGTGAGTGGGTCCAAGCATTGGAGTAAGACCTGTGAGGGCACATGATGTAAGTATTCTGTGGAACTCTAATGAAATCAATCCAAAAGTACACATTTTGCCTCTGTAACAATTAATGTTTGTGATTTGGAGGTTCATAATTTCTCCTTCAAATACGTACGAATATGGTTTTCCTTCTAACAATGCTTCGTAAATAATACAAAGTGATCACAA

mRNA sequence

CAAAACTTTTTAATTCCCCGCTTCAGCTCCTTCCCCTTCACTGGTTCGCTGCTCCTTCCCCTTCACTGGTTCGCTGCTTTGATTTTGTTTTCATTTTCCCACTTTTCCTCCTTCCTCTCTCTGGTTCTATGCGCCTTCCCTTTCTTTGGATTCTAACAAGGTTGTTGTTTCCCCACCGTCGTGGCGCCGTCGTTACTGCCTCCTCACGAACTGGTAATCTCCTTAACTCACTTCATTAATTAGATTGAATAAAATAAACATCCCCAATTGGGCAAACCCTAGCCATTTCAATTGATTTTCTCCCTCCTTTTGTTGTTGTACGACGAGCACTCCACCGCCGACGTCGTTGTTGACATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGTGGTGTGAAAAAATCTCCTGCTAGGATTAGAGTAGGCAAGAAGTTCTTGACATGGAGAGACTGATGATGGACTCCTTACAATTCAATTTGTCGGTTCCCACCCATATGTCTTCATGAAACTATACCTTAAAGCAGCTGAAGAATAGACAAAGAAGTAAGTTTTATTGACCCTTCGAACTCCTGTCATTCTGATTGAGCTTTGCCCGATTGAGCATGAAATGCCGAGGTTCCCACCTTCTCTATTAGCAGCAGCTGCAGTATTCAGTGTTATTTGCACTGTGATTTGCACTGTGAGTGGGTCCAAGCATTGGAGTAAGACCTGTGAGGGCACATGATGTAAGTATTCTGTGGAACTCTAATGAAATCAATCCAAAAGTACACATTTTGCCTCTGTAACAATTAATGTTTGTGATTTGGAGGTTCATAATTTCTCCTTCAAATACGTACGAATATGGTTTTCCTTCTAACAATGCTTCGTAAATAATACAAAGTGATCACAA

Coding sequence (CDS)

ATGGTGGTCATGTTCTTGTTGCTGGTGTTGGGTTGCCGGTCTCACTTTCTCCTCTCCTTGTCCTTATTTCTTTGCTCCGCTGAGCCACTGCAACCCTGCCACCCTGTACTCGGCCACCGTTTTTTATCTGCTCCTCTACCGCCGTTTCCGCTTAAAACTTTGCAGGCAAGGAGACTCTTCAGTGGTGTGAAAAAATCTCCTGCTAGGATTAGAGTAGGCAAGAAGTTCTTGACATGGAGAGACTGA

Protein sequence

MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLFSGVKKSPARIRVGKKFLTWRD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03116Spo03116gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03116.1Spo03116.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03116.1.utr5p.1Spo03116.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03116.1.CDS.5Spo03116.1.CDS.5CDS
Spo03116.1.CDS.4Spo03116.1.CDS.4CDS
Spo03116.1.CDS.3Spo03116.1.CDS.3CDS
Spo03116.1.CDS.2Spo03116.1.CDS.2CDS
Spo03116.1.CDS.1Spo03116.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03116.1.utr3p.1Spo03116.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03116.1.exon.5Spo03116.1.exon.5exon
Spo03116.1.exon.4Spo03116.1.exon.4exon
Spo03116.1.exon.3Spo03116.1.exon.3exon
Spo03116.1.exon.2Spo03116.1.exon.2exon
Spo03116.1.exon.1Spo03116.1.exon.1exon


Homology
[Close]
BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902187796|gb|KNA10988.1| (hypothetical protein SOVF_139320 isoform B [Spinacia oleracea])

HSP 1 Score: 134.4 bits (337), Expect = 8.800e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 SGVKKSPA 69
          SGVKKSPA
Sbjct: 61 SGVKKSPA 68
[Close]
BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902187795|gb|KNA10987.1| (hypothetical protein SOVF_139320 isoform A [Spinacia oleracea])

HSP 1 Score: 120.6 bits (301), Expect = 1.300e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 S 62
          S
Sbjct: 61 S 61
[Close]
BLAST of Spo03116.1 vs. NCBI nr
Match: gi|902229937|gb|KNA21651.1| (hypothetical protein SOVF_041300, partial [Spinacia oleracea])

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-7
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCH--------PVLGHRFLSAPLPPF 50
          MVV+FLLLVLGCRS  LLS SL +CS EPLQPCH        P+LGHR  S+PL  F
Sbjct: 25 MVVLFLLLVLGCRSPLLLSSSLCICSPEPLQPCHLVLDHRLPPILGHRLRSSPLRRF 81
[Close]
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139320 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.100e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 SGVKKSPA 69
          SGVKKSPA
Sbjct: 61 SGVKKSPA 68
[Close]
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUL8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139320 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 9.100e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60
          MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF
Sbjct: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCHPVLGHRFLSAPLPPFPLKTLQARRLF 60

Query: 61 S 62
          S
Sbjct: 61 S 61
[Close]
BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ55_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_041300 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.300e-7
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

		  

Query: 1  MVVMFLLLVLGCRSHFLLSLSLFLCSAEPLQPCH--------PVLGHRFLSAPLPPF 50
          MVV+FLLLVLGCRS  LLS SL +CS EPLQPCH        P+LGHR  S+PL  F
Sbjct: 25 MVVLFLLLVLGCRSPLLLSSSLCICSPEPLQPCHLVLDHRLPPILGHRLRSSPLRRF 81
The following BLAST results are available for this feature:
BLAST of Spo03116.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902187796|gb|KNA10988.1|8.8e-29100.hypothetical protein SOVF_1393... [more]
gi|902187795|gb|KNA10987.1|1.3e-24100.hypothetical protein SOVF_1393... [more]
gi|902229937|gb|KNA21651.1|3.2e-763.1hypothetical protein SOVF_0413... [more]
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BLAST of Spo03116.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QWA1_SPIOL6.1e-29100.Uncharacterized protein OS=Spi... [more]
A0A0K9QUL8_SPIOL9.1e-25100.Uncharacterized protein OS=Spi... [more]
A0A0K9RQ55_SPIOL2.3e-763.1Uncharacterized protein (Fragm... [more]
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BLAST of Spo03116.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03116.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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