Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTACAGCCAGCTTGGCTGTACCCGAGGGCAGCCAAAAAATTGCGCTCCCCACTCAATTCCCTCAAAATCACGAGTGAATAGCAGTCAAGATATGTAGCCCTTTAACCCCCAAACAAGCCAAAGAAAACCCAGAAACTGCTCAAATATCAAATTGCCCCTCCATTTGTTCTTGCCCCAACCTTAGTATCTTCTTAATCCATCCTTAATAAGAAAAAACAGGGTCTCTGGAATGCTGAAAATGGAGTTAGGAATTGAAAGTTTGCTGAAAATGGCATGGGTAGCAGCAATTTTACCCATTTTAATTGCTTCCTTCCCATCATCTTATCTCAATCCGGTGCATCAAACTCTTCTTGTTTTTGCTGGTCGTGGAAAAATCATCCAGTCTTCTTCTCGTCTCAATGTAATCCCTCTTTTTTCTCTTTAAACTCTAATGTTTAATTTCAAATTCTGGGTTTGATTCATTTGGTTCTTTTGAAATTGTTAGACTATGCTATGTGTTTTATTTTTGCATCCTCAATTGTAAATCTTATGTTAAATATTATCATGTGGGGTTCTTTCTTTGGATTGAAATTAGTTTGATTTTGATTTGATACTGTTTTCCCTTCTTAATTGGTTTGAAAAGATGATAATTTGTTTGTCTTAATGGTTTAGACATGGTTTAAGGATTGAGTACCCCAAATGGAGATTGGTGTAGCACTTGTAACTGGGTGAACTTTTGTTATGAGCCTATAGAAAGTCATATAGGCAATGATGTAGATGTTAATGAGTACGTGGACCACCACCACACGACTTTACCGATTAAGCTAGTTGACACCAACGTTATTGGTAACTGTGGATAATATAGGGTCGACAACAGATTGACTGAAGAGCAATTAGAGTATTGTAATTATAGGGTGTTTATCTATGTGAAAATGAAGGAGACCTGGGTTATATCGTGGTCAATCATAGTCTTGTAGATGAAGCTGCATTTCCTGGATGACATTATTACCTTTGGAGCTGGAGCTGATAACTCCTGAGATGAATAGTGGGCCTTTCTCTCAGCTGGAGCTTGAACGGCAAAGGAGACGAATAAGAATATTGATTCATATTCAAATCATATATTCGGCTGAGGCTTGTACTTGAGAATGTAAACTCATGCTTCTAAACAATGTGGTTATTTTTAGCAAGCACAGCTAGATATAAGCAATATGTACTGTTGAATACTTTATTTTGAGGGGTGGCAGTATGTTCTGTTGAGTACTTACTATTACATAGATTGGATTGACATAGAATGGCAGTATTTGGATTTTATTGCTTCTAGTCTTGACTTTTCTTTCATTGAAAAATACTGAACTCTTCTCCTTGTCTTTTATCTGAAAGGATTATACCTCTTTCCTTTTGTTGTAGATCGGTCCTTTTTTTAAAGCAAATCATCTTGCTGACATGAGTAATTCTGTTGACTTGTAGAAACTCACAGTGCCCCAGAAATTTTTCTCACATTTCTATGGGTTTGCTGTGGTATGGACATCATTTTTGCTTCTCACAACTTGGATTTATGCACATAAAATTGGATCATTGGTTTCTGAGTCGACATCTCACTCTAATGTTGCCAGCTACTTGACTGGAGGTTCACAAGTTTTTTCCATTTATAAAACATATTCAACTTCACTGGAGCACAACTTTGGGATTTGGCAAGCAGTCTTTCTTCTTATATTGATGGAAATTCAAGTATTGCGGCGCTTGTATGAGTCGCTATATGTGTTTAACTACAGCAGTACAGCTCAGTTGCATATCTGCGGATATCTAACAGGTTTCTTGTAAGATACTTGTATCTTTTATGTCAGAGTTACCTGATTTGAATAGGCATCTTATTACTGATTCTACATACGTTCCTGCTTTGACTGACATTTTATTTTCCTTGCATCTTTTAAGAGTTTTAACCTTCGTAGAAAATTATTTCCCCCTAACAAGTAACAAGGATGTATGCATGTATGCTAAACTGGAACATAAAACACAGGATTTCTCATCTGCACTATACCTGATAAATGATGATTTTTCTGGTAGTGATATGTTTTAGTGTTACTTATTTCTGATTTGTTGGATTTGAAATTAAGTGCTGCAGTTGCCCCTTCTCTGATCCCAGACTTTCTGTTGTAATTTTGAGGAATTAATTCTTGGTTGTGCATCAAGCTTAAGCTTTATGGTGGCCGAATACTTCAGAATATAGAATGAGGACTTGTTCGTTATTCAATGAACTTGGGAACCAGTTAGCACTTGAAATGTTTGAGGATACCCTTTGAATTCACCACTTAAACCTCTGTTAAGACATGCTTATTTTGGTTTTAACATGTTTCATATGTTTTGTTGTAGGATCTAGTTAGCATTATGCTTCTTCAACATATTGATTACTGATTTTCTTAATTTGAGACACAAAAACTCTTCGATTGGTTGTTTATTATTACATTTGAACAACTTGCATTGTGCTTTCATAACTGTATATTGTATGCCATTATTTACTTTAAATTGGCTGGACTCTGTTTTATATGTTTGTACTTTTTGTGTTAAGCTTTTACACAGCAGCACCACTGTCCCTTTGCTGCAATTGTGCACCAGAAGTATTTACATTTGTGGCAAACACAGTTGCTGAGTTTATTGTGAAAGGAAAAAATCGCATGCCGCCTCTTGAATTTCAATGGTTGGAGTTTCTTACTCCTCTCCTGAAGCTTCGTTGGTTTCAATGGATTGGTGCAGTCATTTTCTTTTGTGGTTGGCTTCATCAGCGTCGCTGTCATGCCATTCTTGTGAGTATTCCTCTTTGCAATTTTCAGTTGGCATGAAAAAAGATCTTGGATATGTGAACAAATTATTACAGCAATTTGCTTGATATCTTGTTTTTGTTCCAATGGCAATTAACAAGTCCTTTCCCTAGCTAAACAAGTAAAAACATGTTATCCTCTCCATACTAAAATCGTAATTATTCAGACTGTCTTAGTTGAATTTAATTTGGTAGAATTTTTACATATTCTTCTCCCTTCCAACAGTTCCAAGGCCATGGTGCTTATTCAATTGTAAGTTTTAAGGTAGCTACAGAATGCTGTAACATACATCTGAGATCGAGAGCCTTATGCTATTATTTTTTTGTTTTTTTTATTCTGTAGACCGTAGTATATAAGGATTTCTGACAGCTTGGCTTTCGTGATTGAGGAAGACACTGAGCTGATTAGTATCTCGTATTTTCTGTTCCTTGGTAAATTTTTATTTTTTAAAAGACTCAATGGATAACTCAACATGTTTTTAATTGCCCTTAATTTAAAAACTGCTTATTTTTCGTCTTTTGTTTTATGCATCTTTGGAGAAAGGCTGTGGACTTGGTTATAGCTTTAGCAGATACTCCGTAAAAGTTTTGCTTTCTCTTTTACATACTCTGTTGCAGATATTAAGTGTATACTAATGCAACATTACTAATATTCAATCAGGGGAATCTGCGGGAAGTGAAAGAAGAAGCTAAGGATTACCGAATCCCTCATGGTGACTGGTTCGAAGTTGTCTCCTGTCCTCATTATTTTGCTGAGATAGTAATGCTCCTTCTCCTCCCTCTTCCAAATAAAAAAAGTAAAATAGTATTTCCTCCTTGGTAATAATAAAAACTGATGATTGATTAACGATTAATGATTAATGATTAATGATGAAGGTTATGTATGGCGGTCTTGTGGTTGCTAGCGGAGGCCTAGACCAGACTGTGTGGTTGATTTTCGCATTTGTGGTATTCATTCCTCTTTCCTTGAATGGCGTAATTTGGTGTCTTAATTAAAGCTGAGAATATTAAATGAATGGGTGAATTGCAGGTGGCTAATCTTGTGTTTGCAGCAGCAGAGACACAGCGATGGTATTGCCGCAAATTTGACAACTACCCAAGCAATCGCTATGCCATTATTCCCTATGTTTATTAAGAATGATCAATAATACAGTTGTACATATACGCTGAAAATTGTTTGTGAATCGTCTGGTTGTAATTTCCATTTAGAGGGAACCCAGCGTATAGAAATTTGTTAACCAGTCCTAAACTCCATGTATAAATTTTGCCCTGCGGCTCCATGTTAAATGACTATGCTGAGATGATGACTATCTCAAACATCACACCTCTTCTCCCCTGTTTTTACACTACTGAGTACTCCCTTTCTTCAAAAAAAATTGTCGTCTACACTTTTGTAACATTTAGAAAAAGAATTATACTAAATTTTAAACACCC GGTACAGCCAGCTTGGCTGTACCCGAGGGCAGCCAAAAAATTGCGCTCCCCACTCAATTCCCTCAAAATCACGAGTGAATAGCAGTCAAGATATGTAGCCCTTTAACCCCCAAACAAGCCAAAGAAAACCCAGAAACTGCTCAAATATCAAATTGCCCCTCCATTTGTTCTTGCCCCAACCTTAGTATCTTCTTAATCCATCCTTAATAAGAAAAAACAGGGTCTCTGGAATGCTGAAAATGGAGTTAGGAATTGAAAGTTTGCTGAAAATGGCATGGGTAGCAGCAATTTTACCCATTTTAATTGCTTCCTTCCCATCATCTTATCTCAATCCGGTGCATCAAACTCTTCTTGTTTTTGCTGGTCGTGGAAAAATCATCCAGTCTTCTTCTCGTCTCAATAAACTCACAGTGCCCCAGAAATTTTTCTCACATTTCTATGGGTTTGCTGTGGTATGGACATCATTTTTGCTTCTCACAACTTGGATTTATGCACATAAAATTGGATCATTGGTTTCTGAGTCGACATCTCACTCTAATGTTGCCAGCTACTTGACTGGAGGTTCACAAGTTTTTTCCATTTATAAAACATATTCAACTTCACTGGAGCACAACTTTGGGATTTGGCAAGCAGTCTTTCTTCTTATATTGATGGAAATTCAAGTATTGCGGCGCTTGTATGAGTCGCTATATGTGTTTAACTACAGCAGTACAGCTCAGTTGCATATCTGCGGATATCTAACAGGTTTCTTCTTTTACACAGCAGCACCACTGTCCCTTTGCTGCAATTGTGCACCAGAAGTATTTACATTTGTGGCAAACACAGTTGCTGAGTTTATTGTGAAAGGAAAAAATCGCATGCCGCCTCTTGAATTTCAATGGTTGGAGTTTCTTACTCCTCTCCTGAAGCTTCGTTGGTTTCAATGGATTGGTGCAGTCATTTTCTTTTGTGGTTGGCTTCATCAGCGTCGCTGTCATGCCATTCTTGGGAATCTGCGGGAAGTGAAAGAAGAAGCTAAGGATTACCGAATCCCTCATGGTGACTGGTTCGAAGTTGTCTCCTGTCCTCATTATTTTGCTGAGATAGTTATGTATGGCGGTCTTGTGGTTGCTAGCGGAGGCCTAGACCAGACTGTGTGGTTGATTTTCGCATTTGTGGTGGCTAATCTTGTGTTTGCAGCAGCAGAGACACAGCGATGGTATTGCCGCAAATTTGACAACTACCCAAGCAATCGCTATGCCATTATTCCCTATGTTTATTAAGAATGATCAATAATACAGTTGTACATATACGCTGAAAATTGTTTGTGAATCGTCTGGTTGTAATTTCCATTTAGAGGGAACCCAGCGTATAGAAATTTGTTAACCAGTCCTAAACTCCATGTATAAATTTTGCCCTGCGGCTCCATGTTAAATGACTATGCTGAGATGATGACTATCTCAAACATCACACCTCTTCTCCCCTGTTTTTACACTACTGAGTACTCCCTTTCTTCAAAAAAAATTGTCGTCTACACTTTTGTAACATTTAGAAAAAGAATTATACTAAATTTTAAACACCC ATGCTGAAAATGGAGTTAGGAATTGAAAGTTTGCTGAAAATGGCATGGGTAGCAGCAATTTTACCCATTTTAATTGCTTCCTTCCCATCATCTTATCTCAATCCGGTGCATCAAACTCTTCTTGTTTTTGCTGGTCGTGGAAAAATCATCCAGTCTTCTTCTCGTCTCAATAAACTCACAGTGCCCCAGAAATTTTTCTCACATTTCTATGGGTTTGCTGTGGTATGGACATCATTTTTGCTTCTCACAACTTGGATTTATGCACATAAAATTGGATCATTGGTTTCTGAGTCGACATCTCACTCTAATGTTGCCAGCTACTTGACTGGAGGTTCACAAGTTTTTTCCATTTATAAAACATATTCAACTTCACTGGAGCACAACTTTGGGATTTGGCAAGCAGTCTTTCTTCTTATATTGATGGAAATTCAAGTATTGCGGCGCTTGTATGAGTCGCTATATGTGTTTAACTACAGCAGTACAGCTCAGTTGCATATCTGCGGATATCTAACAGGTTTCTTCTTTTACACAGCAGCACCACTGTCCCTTTGCTGCAATTGTGCACCAGAAGTATTTACATTTGTGGCAAACACAGTTGCTGAGTTTATTGTGAAAGGAAAAAATCGCATGCCGCCTCTTGAATTTCAATGGTTGGAGTTTCTTACTCCTCTCCTGAAGCTTCGTTGGTTTCAATGGATTGGTGCAGTCATTTTCTTTTGTGGTTGGCTTCATCAGCGTCGCTGTCATGCCATTCTTGGGAATCTGCGGGAAGTGAAAGAAGAAGCTAAGGATTACCGAATCCCTCATGGTGACTGGTTCGAAGTTGTCTCCTGTCCTCATTATTTTGCTGAGATAGTTATGTATGGCGGTCTTGTGGTTGCTAGCGGAGGCCTAGACCAGACTGTGTGGTTGATTTTCGCATTTGTGGTGGCTAATCTTGTGTTTGCAGCAGCAGAGACACAGCGATGGTATTGCCGCAAATTTGACAACTACCCAAGCAATCGCTATGCCATTATTCCCTATGTTTATTAA MLKMELGIESLLKMAWVAAILPILIASFPSSYLNPVHQTLLVFAGRGKIIQSSSRLNKLTVPQKFFSHFYGFAVVWTSFLLLTTWIYAHKIGSLVSESTSHSNVASYLTGGSQVFSIYKTYSTSLEHNFGIWQAVFLLILMEIQVLRRLYESLYVFNYSSTAQLHICGYLTGFFFYTAAPLSLCCNCAPEVFTFVANTVAEFIVKGKNRMPPLEFQWLEFLTPLLKLRWFQWIGAVIFFCGWLHQRRCHAILGNLREVKEEAKDYRIPHGDWFEVVSCPHYFAEIVMYGGLVVASGGLDQTVWLIFAFVVANLVFAAAETQRWYCRKFDNYPSNRYAIIPYVY Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo03250.1 vs. NCBI nr
Match: gi|902186500|gb|KNA10694.1| (hypothetical protein SOVF_141950 [Spinacia oleracea]) HSP 1 Score: 698.0 bits (1800), Expect = 8.400e-198 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
BLAST of Spo03250.1 vs. NCBI nr
Match: gi|731376955|ref|XP_010667728.1| (PREDICTED: polyprenol reductase 2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 566.6 bits (1459), Expect = 2.900e-158 Identity = 275/343 (80.17%), Postives = 305/343 (88.92%), Query Frame = 1
BLAST of Spo03250.1 vs. NCBI nr
Match: gi|870841425|gb|KMS95175.1| (hypothetical protein BVRB_011620 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 564.3 bits (1453), Expect = 1.400e-157 Identity = 271/336 (80.65%), Postives = 300/336 (89.29%), Query Frame = 1
BLAST of Spo03250.1 vs. NCBI nr
Match: gi|731376958|ref|XP_010667729.1| (PREDICTED: polyprenol reductase 2 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 482.3 bits (1240), Expect = 7.200e-133 Identity = 227/282 (80.50%), Postives = 252/282 (89.36%), Query Frame = 1
BLAST of Spo03250.1 vs. NCBI nr
Match: gi|567861706|ref|XP_006423507.1| (hypothetical protein CICLE_v10028796mg [Citrus clementina]) HSP 1 Score: 461.1 bits (1185), Expect = 1.700e-126 Identity = 226/340 (66.47%), Postives = 267/340 (78.53%), Query Frame = 1
BLAST of Spo03250.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTV1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141950 PE=4 SV=1) HSP 1 Score: 698.0 bits (1800), Expect = 5.900e-198 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
BLAST of Spo03250.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DWE1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_011620 PE=4 SV=1) HSP 1 Score: 564.3 bits (1453), Expect = 1.000e-157 Identity = 271/336 (80.65%), Postives = 300/336 (89.29%), Query Frame = 1
BLAST of Spo03250.1 vs. UniProtKB/TrEMBL
Match: V4S8H8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028796mg PE=4 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 1.200e-126 Identity = 226/340 (66.47%), Postives = 267/340 (78.53%), Query Frame = 1
BLAST of Spo03250.1 vs. UniProtKB/TrEMBL
Match: W9QZK5_9ROSA (Putative polyprenol reductase 2 OS=Morus notabilis GN=L484_012255 PE=4 SV=1) HSP 1 Score: 459.9 bits (1182), Expect = 2.700e-126 Identity = 219/340 (64.41%), Postives = 271/340 (79.71%), Query Frame = 1
BLAST of Spo03250.1 vs. UniProtKB/TrEMBL
Match: F6I183_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g00820 PE=4 SV=1) HSP 1 Score: 452.2 bits (1162), Expect = 5.600e-124 Identity = 218/340 (64.12%), Postives = 270/340 (79.41%), Query Frame = 1
BLAST of Spo03250.1 vs. ExPASy Swiss-Prot
Match: POED2_ARATH (Polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1 SV=2) HSP 1 Score: 399.1 bits (1024), Expect = 5.000e-110 Identity = 194/328 (59.15%), Postives = 240/328 (73.17%), Query Frame = 1
BLAST of Spo03250.1 vs. ExPASy Swiss-Prot
Match: POED1_ARATH (Polyprenol reductase 1 OS=Arabidopsis thaliana GN=At1g72590 PE=3 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 5.800e-98 Identity = 186/344 (54.07%), Postives = 239/344 (69.48%), Query Frame = 1
BLAST of Spo03250.1 vs. ExPASy Swiss-Prot
Match: POED1_ORYSI (Polyprenol reductase 1 OS=Oryza sativa subsp. indica GN=OsI_17065 PE=3 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 1.500e-93 Identity = 182/347 (52.45%), Postives = 238/347 (68.59%), Query Frame = 1
BLAST of Spo03250.1 vs. ExPASy Swiss-Prot
Match: POED1_ORYSJ (Polyprenol reductase 1 OS=Oryza sativa subsp. japonica GN=Os04g0576800 PE=2 SV=2) HSP 1 Score: 344.4 bits (882), Expect = 1.500e-93 Identity = 182/347 (52.45%), Postives = 238/347 (68.59%), Query Frame = 1
BLAST of Spo03250.1 vs. ExPASy Swiss-Prot
Match: POED2_ORYSJ (Polyprenol reductase 2 OS=Oryza sativa subsp. japonica GN=Os07g0493400 PE=2 SV=1) HSP 1 Score: 320.1 bits (819), Expect = 3.000e-86 Identity = 177/347 (51.01%), Postives = 228/347 (65.71%), Query Frame = 1
BLAST of Spo03250.1 vs. TAIR (Arabidopsis)
Match: AT2G16530.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein) HSP 1 Score: 399.1 bits (1024), Expect = 2.800e-111 Identity = 194/328 (59.15%), Postives = 240/328 (73.17%), Query Frame = 1
BLAST of Spo03250.1 vs. TAIR (Arabidopsis)
Match: AT1G72590.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein) HSP 1 Score: 359.0 bits (920), Expect = 3.300e-99 Identity = 186/344 (54.07%), Postives = 239/344 (69.48%), Query Frame = 1
BLAST of Spo03250.1 vs. TAIR (Arabidopsis)
Match: AT2G38050.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein) HSP 1 Score: 73.2 bits (178), Expect = 3.600e-13 Identity = 45/122 (36.89%), Postives = 59/122 (48.36%), Query Frame = 1
BLAST of Spo03250.1 vs. TAIR (Arabidopsis)
Match: AT5G16010.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein) HSP 1 Score: 70.1 bits (170), Expect = 3.000e-12 Identity = 36/113 (31.86%), Postives = 65/113 (57.52%), Query Frame = 1
BLAST of Spo03250.1 vs. TAIR (Arabidopsis)
Match: AT3G43840.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein) HSP 1 Score: 69.7 bits (169), Expect = 4.000e-12 Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03250.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03250.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03250.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03250.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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