Spo03272.1 (mRNA)

Overview
NameSpo03272.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 43909783 .. 43915733 (+)
Sequence length2053
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAATCTCCATTAAAATCATCAATCTCCTCCGTTCCAAATTATCTTCTGGTTTCAATTTTATTTTTTCTTCATTTTCGGAGCAGATCTCGCCGAAAAATTCTGAAAAATGACCAACGGGGAAGTTAAGGCGGTGTCCAGAGAGGTGTCGTTGATTATGGGAAAAGAGTTGCAGATCTAGGAGATGGTGATACTCTCTATTTTTGAATGTCTTTCCGTTTGGAGCGGCACAAATCCTCTATATCTCACCATTTCTCAAGCCTTTTTTATTTCTTGCTCCAACCATCAAGATCGAAGAGTTAATTCTTGTTCGAATAATGACTTTCAGGTTATTTCGTTCCTCTGAAATTTGGAACTTCGAGGGTTTTCATTTAATTATTCGTCTTGAATCGATTTTATTTCCGGATGCCGCTATTTCAGGTCCTGATTCTGATTTAATTTTCTCAATCTTCTTTTCATTTTCCAATTTCAATTAGTTGATTAATATGAGTAATTTTGTTTTTTTAAAATCTTGCTCGAAACTGGGGTAATTTTTGGCCTATCGCAATTGAGACTTTATTTGTTAGATCATAAAGGAACTCATTGGGGTTAAAATGGAAGGGAGTAATAATCTGATGAAGAACTCCTTAGTAGTTGTCTTGGTAAATGTCGAATGTGTGTTGTCGGCCTCTTGCTTGATTAGAAAAGATATTGTTATTTAATAAGGAACTAAATGATGACTTGCTTTACGAAAGGCTACCGTCTATAACAAACTTCCAATCATATATTAAAAGTGTTGGTTTGAATTGCAGTTGTTTTGCTTCTCTAAAATATTGAACTTTGGTGTTTTTCTTAATTCAATTAGATATTAATGTTGTTCTTTTAGAGATAGGGTTTTCTTATATATCTTCTTCTAATTCTATTGTAAATGGTATATTTTTAGGCTATATTTATAAGGTTTGATGACTTGATATGCTGTAAATTGATGGTATGGTTGGTAGAATAAGTTCCTGTATCCAGTGGATTTTGAATCAGTAAGTAGATAGCTTAATTTCTTGTTTATTTGTAAATTTATGTTTTAGTTTGTTTGTTGATACTTTAAAATAAAATACATTTCATGATTAGGTTTTGATCCCGTTGAAAGAGTGGTTATTCAACCAAAAGGAATATTGTTTGTTAGATGAGCACCTTATTAGCTGCTTGTATTACTCTATATTGTGAAATAACACATGGTTATTGCTTATAGGTTCATGGTTCAATTGTAAGGCCATTACATTGACTCTACTTGACTCTATGAGGACGGGAGTATCTTTGAATGCATTGGGGTCACGATGGTGTGTTATCTCTCCACTCTTGATGCAATTTCTTTTTAGCTTACATAAGATACATTTTTGTGTTACTTTCTGATGTTCGCGGACTTTTTCAATCTGTCTTATTATCGTCATTTTGTGGTAGACGAGGAGTTAAAATATGATAATCTTGCTTTGGGGTTAAGCAGAGTTCTGGAGCATGACAAATCTGCCTTCGACGCAGATCGTCTGCAAAATTAAACGGGTATGGTGTTTGTATTACTTTTGAATTACTCATTAGTTTACTCTGAAATTATAAGCTTTCGCAACCATCTTCCTTGGGAGCTACACTACTTTCATTTGTTTGCCTTAGCAATGATAGGGCGTTTTTCCATCGTTGAAAAGAAAATCACCTCACAAAACAAAATTTATAAAACACCTAACTAACCGACTATATTGACTATAGCGGCAAGCATAGGGATCGTCCCATAGGAATGTATATGTTTGACTATTCAATCTATGCGTTCACAAGCTAGTTCGGATGGAAAATGATTTTTTTTGTATTAATCTAATGAAAGCTAGAAATGCAAACAAATAAAGAAATTCAAGAGGATTCGGGAATCGGCAATGGAAATCGAATCAAAGGAAGAACAAGGTCAAGACATTCATGAATATGCAACGACTTAGCACATAGGGAAATAGAATTGAATGACGTGTGCGCCACCTCTCGGATGGAGCACGCGAAGCGTCTAATCTATGGAAGAGCTTTCGCCTAATCATAGACTAAACAACTTGCATATAATAGGAACCACTATTCACTTGCACACAAATTAGCCTCACAATGTCTTGCCAAACCTAGCCTATGCATTCCAATCTAATCCAATCAAATAGAATTTGCAACTACTACTCAATTATTCATGGATGTCCTATCACTAAATCATGTTTAATTACACCCAATCAATCATGAATTTCCCCAAAATTCCCCAAAATTCAATCCCAAGGCTTCAACCCCAAGGCTTCAACCCTAACCTCTAGACTAAAACTACTCAATTAGCATGATTAACATCAACATTAAACTAACATTAATCCTAATCATGAAACTAATTGAATAAGAAACTAATGGTATCAAGAAAATTCAGAAAATTCAAATATAAAAAATTGGGGGAAAATTCAAAATATGAAACTAATTCTAAAATTCAAGCATGAAATCAAAGCATAAACGAAATTAATGAAGCATTTAAGAATTGAAAGAACAAATCAAAAGAAAAATTAGAATTATACCTTGAATTGAAGAATTTGCATCAAACCTTGAAGAACAAAATGAAGAACAAAGCTCAAAATAAAGAGAAAGAAATCTGAAAATTAATGATTGAATTCAACTAAGAATCAAGAATTTGAAGCAATGAATCCTAATCCTAATCTCTAATCTAAGCCCTAAACTAATTCTCTCTCTAAAAATCTAATTCTAAAATCTGAAAATGAAAAAAAACTAAAAACTAACTACGTGAAACTAAGTCGCGATTTCTCGTATTTAAAGTGCTCCGCCCAGCTGTGCGACCACACGAGGAAGGCTGTGCGCTCGCACCAAACTCCACTGATTTCCTGCATTGATTTTGGTAATTCGTGCGCACACACGAGTAGAGCAGTGTGCTCGCACAGGATCAGCTCGACCGCACGTCTGACTAGCTCGATCGCACAACATAGTAGATGCTGGTTCTGCGCTATTCTGCTGCACTACTTGGCCGTTGTTCTGCTATGCTCTTGCTGCACTGCTTGGCTGCTGATCTGCTGTGCTATATGGCTGCTGCCAAGGGAGTGCAAGAGGGCTTGAGGTGAGCACAAGACATGCTGCAAGTGTGCTCGTGCATTGCTGTGAGTGCACAGCTATGGTTTCTCGAGTGCTGCTGAAGGTGCACGAGTGTAGCTGTGGGGCTGCTTTACCTTGGCTCTTGCGTGCACTTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCTGCTCGTATTGCTGCAGCATTGTGGCATCGTATGCAAGCTAGTGCCTCGCCTACCACATTCAATAAAATCATAAATCATATTATTAAAATCGTAAATCAAAATATTTCGTTTAACTTTTTTGCAAATCGTAAAACATACAACTCGTCGACAAGCATGATGACGCAATATTAACACGTTAATACTCAAAATGACTCTTACGCAATGAGAATGCGCATAAAAGGCATATTTAGAGCAAAAACGACTAAAATATACGCAAGGCGAGAAAATGTTACGATAAATGCAAAAATGAAATAAACGAACTAAAAACGATAAAACTAAGCGAAAATAATAATAAAATGCTAATGAAATGAACTAAAATCCTAAGCTAAGAGTGACATAAATGTCGCTGATCAAGCAATCACATGCATACATAGTTACATGAGCTTCATAGGTTTCCATTGTTATTGCTTCTAGAATATTGAACAACTTCTTGAAATTTGGAATGTCGTTTTTTATTGCAAAAGTATATACAAATGTCCACCCATACTTTTAAGTTACATGAACTCGTATAGGGGACTGGTTGTTTCAGTCGAATTACGGAGATGTTGAAGTGGCCGAGGCCACTTCCTTTAGAAGATGAACGAGATCGCCTACTTCAAGAGGTACATCTCACAACAAGGATTGCATCTGTTATGTATTATTTGTTGTCGTTATGTAACTTTATGATTGTCTCAATAGTCTAACGGTCTATTGAATTCCTGAGTGCTTTGCTTATCTCCTTAACGATTTGCTTATCTTCTTTTACTGTAATATTTTTAATAGGACATATATATTCTGTATGATTTTGTCTATTTATATTATTTAGATGCTTTTCATTGATTCAGGTGCCCCATGCTTTTTCTAGTTCTGGTGCAATTATATGGACCGCCTAATCTTGAATTCATTGATTGCTTTTTGAGGTAATCGTAAAAAACTCTCATTTGCTGTTGTACATTCCTGTTTAAACTATGAAAAGCTCTCATTTTCATTGTCCTTCGCCTTTTCCAGTTCAAAATTGCTGCTAGCGCATTGGAACTTTGGAAGAGGCTAATCTAGAAAACAAGTTTGTAGAGCCAAGTGTCAGACCCTGTAGACGCCTACTTTTGTCCCCATTCCCGAAAGAGAAGGTTCGATGATGAGAACATAAATCTCCACTTGGCAACGCATCTCCTATAAAATAACGAATCTCAATCACCCTTTCATTTCAGCCAAAACTGCTATTTATAGAAACCTGCTAAGAATAGTAACTACCGTAAAAGCTAGTTATTAAAAGTGGCAAAATCATAAAAGATAGAAACCTGTCAGAATTAGGTGTTGCACTCCAACATAAATCCTAAAAGAGATATAATTTACAAAGGAATTCTATTCCTAGTATAATTCGAAAATAAGAGTTACGTATTAATTAAATTCCTAACGAACCTAGAGTTCGTAACGGGCCCAGACGCATTCCGTCATAATACGCACTAAAAGACTCGGATAAATCTCCCAAAAAGGTCCGTGTTCTAAGAGTCCAAATCGAACAAGAACTCGGCCCAGATCCAAGTGTTGAAAGTGCCTAGGGCCGTTTTATCTCCGGATTCTTTTTGGATTCGTATCTTAAAATCTATTTTTCCACACACTCTTTTCATATAAATACAGCCTAAAACCGACGTGAAAATAACACACAATTCCATAATCGACCCACTATAACACACACGATACAAATTGGCAGCAGAGCAGCGGAAACAAATCAACTTTTCATGAATCTGATGCTGATGTTATTAAATCAGGGGGTTGTTTTTAAACTTTTAAACTGATGCTGCTGCAGTTTACACTCCAGTTTTTTTCTTCTCCAACATAATGCAGAATCCAACACCTCTAAACTTCCTCTCGTTATAAGCTTATTTCTTTAGAGTTAATTAAAAGATTAGAACTTTAACATTTGGTCTTAGTTTTTTAAGCTTCTCATGTATGATATTAATTTTTTCATGGTTATTTATGTTGTAGAAGGAACTTCAGAAAATAATTGAAGAACCAACACTTTTTCATGTCTTAGGTAGCTTTTCTTCTTCTATATCCTTTTTGGTTGTATATTCACTTTCCCATCCAATGATATTTAACTTTTTTTCTTTATCTTGGTGGCACAAAAGGTGTTTAAGTCGAAGTCTCGTAATTAATTTGTGGACTTGTGGGTTTAGGGAGGTACTTCAATCTAAGTTTAATGAAGAAAACAAACAAAATCAGGTGCTTACCAATCGCGTGGATACGGTACATGAAGAAAACAATGCACTTAAGAGCCGTATGAGTTCAGTTGAAGATGAGCTTAAATCATTTAAAGACGTGTTACTTTGAGGCTCCAAGAGAGGACATTTCAACTATTTAGATTTTTATTTTGTTATTTTTGATTGAACATGAGTTTTATATTTATTAGTTTTTTTAGAATTTAAAGACAACGGGATGTGATTGTTGGGTTCATATAACTTCAAGTTCTATTGTCAAATATTTTTTGAGTGATGAAATTTTCATTTGTTAAAATTGATTTATGGTTTTGTATATTGTTTCATAGTGAAAATTTAGGATTTTTGAAGAATGTAAATAATGTTATTATGATTGCAATATTAACTACATAATATTTCGG

mRNA sequence

ATGACCCAATCTCCATTAAAATCATCAATCTCCTCCGTTCCAAATTATCTTCTGGTTTCAATTTTATTTTTTCTTCATTTTCGGAGCAGATCTCGCCGAAAAATTCTGAAAAATGACCAACGGGGAACGGCACAAATCCTCTATATCTCACCATTTCTCAAGCCTTTTTTATTTCTTGCTCCAACCATCAAGATCGAAGAGTTAATTCTTGTTCGAATAATGACTTTCAGGTTATTTCGTTCCTCTGAAATTTGGAACTTCGAGGGTTTTCATTTAATTATTCGTCTTGAATCGATTTTATTTCCGGATGCCGCTATTTCAGGTTCATGGTTCAATTGTAAGGCCATTACATTGACTCTACTTGACTCTATGAGGACGGGAGTATCTTTGAATGCATTGGGGTCACGATGGTACGAGGAGTTAAAATATGATAATCTTGCTTTGGGGTTAAGCAGAGTTCTGGAGCATGACAAATCTGCCTTCGACGCAGATCGTCTGCAAAATTAAACGGGTGCCCCATGCTTTTTCTAGTTCTGGTGCAATTATATGGACCGCCTAATCTTGAATTCATTGATTGCTTTTTGAGTTCAAAATTGCTGCTAGCGCATTGGAACTTTGGAAGAGGCTAATCTAGAAAACAAGTTTGTAGAGCCAAGTGTCAGACCCTGTAGACGCCTACTTTTGTCCCCATTCCCGAAAGAGAAGGTTCGATGATGAGAACATAAATCTCCACTTGGCAACGCATCTCCTATAAAATAACGAATCTCAATCACCCTTTCATTTCAGCCAAAACTGCTATTTATAGAAACCTGCTAAGAATAGTAACTACCGTAAAAGCTAGTTATTAAAAGTGGCAAAATCATAAAAGATAGAAACCTGTCAGAATTAGGTGTTGCACTCCAACATAAATCCTAAAAGAGATATAATTTACAAAGGAATTCTATTCCTAGTATAATTCGAAAATAAGAGTTACGTATTAATTAAATTCCTAACGAACCTAGAGTTCGTAACGGGCCCAGACGCATTCCGTCATAATACGCACTAAAAGACTCGGATAAATCTCCCAAAAAGGTCCGTGTTCTAAGAGTCCAAATCGAACAAGAACTCGGCCCAGATCCAAGTGTTGAAAGTGCCTAGGGCCGTTTTATCTCCGGATTCTTTTTGGATTCGTATCTTAAAATCTATTTTTCCACACACTCTTTTCATATAAATACAGCCTAAAACCGACGTGAAAATAACACACAATTCCATAATCGACCCACTATAACACACACGATACAAATTGGCAGCAGAGCAGCGGAAACAAATCAACTTTTCATGAATCTGATGCTGATGTTATTAAATCAGGGGGTTGTTTTTAAACTTTTAAACTGATGCTGCTGCAGTTTACACTCCAGTTTTTTTCTTCTCCAACATAATGCAGAATCCAACACCTCTAAACTTCCTCTCGTTATAAGCTTATTTCTTTAGAGTTAATTAAAAGATTAGAACTTTAACATTTGGTCTTAGTTTTTTAAGCTTCTCATGTATGATATTAATTTTTTCATGGTTATTTATGTTGTAGAAGGAACTTCAGAAAATAATTGAAGAACCAACACTTTTTCATGTCTTAGGGAGGTACTTCAATCTAAGTTTAATGAAGAAAACAAACAAAATCAGGTGCTTACCAATCGCGTGGATACGGTACATGAAGAAAACAATGCACTTAAGAGCCGTATGAGTTCAGTTGAAGATGAGCTTAAATCATTTAAAGACGTGTTACTTTGAGGCTCCAAGAGAGGACATTTCAACTATTTAGATTTTTATTTTGTTATTTTTGATTGAACATGAGTTTTATATTTATTAGTTTTTTTAGAATTTAAAGACAACGGGATGTGATTGTTGGGTTCATATAACTTCAAGTTCTATTGTCAAATATTTTTTGAGTGATGAAATTTTCATTTGTTAAAATTGATTTATGGTTTTGTATATTGTTTCATAGTGAAAATTTAGGATTTTTGAAGAATGTAAATAATGTTATTATGATTGCAATATTAACTACATAATATTTCGG

Coding sequence (CDS)

ATGACCCAATCTCCATTAAAATCATCAATCTCCTCCGTTCCAAATTATCTTCTGGTTTCAATTTTATTTTTTCTTCATTTTCGGAGCAGATCTCGCCGAAAAATTCTGAAAAATGACCAACGGGGAACGGCACAAATCCTCTATATCTCACCATTTCTCAAGCCTTTTTTATTTCTTGCTCCAACCATCAAGATCGAAGAGTTAATTCTTGTTCGAATAATGACTTTCAGGTTATTTCGTTCCTCTGAAATTTGGAACTTCGAGGGTTTTCATTTAATTATTCGTCTTGAATCGATTTTATTTCCGGATGCCGCTATTTCAGGTTCATGGTTCAATTGTAAGGCCATTACATTGACTCTACTTGACTCTATGAGGACGGGAGTATCTTTGAATGCATTGGGGTCACGATGGTACGAGGAGTTAAAATATGATAATCTTGCTTTGGGGTTAAGCAGAGTTCTGGAGCATGACAAATCTGCCTTCGACGCAGATCGTCTGCAAAATTAA

Protein sequence

MTQSPLKSSISSVPNYLLVSILFFLHFRSRSRRKILKNDQRGTAQILYISPFLKPFLFLAPTIKIEELILVRIMTFRLFRSSEIWNFEGFHLIIRLESILFPDAAISGSWFNCKAITLTLLDSMRTGVSLNALGSRWYEELKYDNLALGLSRVLEHDKSAFDADRLQN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03272Spo03272gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03272.1Spo03272.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03272.1.exon.1Spo03272.1.exon.1exon
Spo03272.1.exon.2Spo03272.1.exon.2exon
Spo03272.1.exon.3Spo03272.1.exon.3exon
Spo03272.1.exon.4Spo03272.1.exon.4exon
Spo03272.1.exon.5Spo03272.1.exon.5exon
Spo03272.1.exon.6Spo03272.1.exon.6exon
Spo03272.1.exon.7Spo03272.1.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03272.1.CDS.1Spo03272.1.CDS.1CDS
Spo03272.1.CDS.2Spo03272.1.CDS.2CDS
Spo03272.1.CDS.3Spo03272.1.CDS.3CDS
Spo03272.1.CDS.4Spo03272.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03272.1.utr3p.1Spo03272.1.utr3p.1three_prime_UTR
Spo03272.1.utr3p.2Spo03272.1.utr3p.2three_prime_UTR
Spo03272.1.utr3p.3Spo03272.1.utr3p.3three_prime_UTR
Spo03272.1.utr3p.4Spo03272.1.utr3p.4three_prime_UTR


Homology
[Close]
BLAST of Spo03272.1 vs. NCBI nr
Match: gi|902223550|gb|KNA19480.1| (hypothetical protein SOVF_061090 [Spinacia oleracea])

HSP 1 Score: 62.8 bits (151), Expect = 6.700e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 139 EELKYDNLALGLSRVLEHDKSAFDADRLQN 169
           EELKYDNLALGLSRVLEHDKSAFDADRLQN
Sbjct: 8   EELKYDNLALGLSRVLEHDKSAFDADRLQN 37
[Close]
BLAST of Spo03272.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJ23_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_061090 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.700e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 139 EELKYDNLALGLSRVLEHDKSAFDADRLQN 169
           EELKYDNLALGLSRVLEHDKSAFDADRLQN
Sbjct: 8   EELKYDNLALGLSRVLEHDKSAFDADRLQN 37
The following BLAST results are available for this feature:
BLAST of Spo03272.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902223550|gb|KNA19480.1|6.7e-7100.hypothetical protein SOVF_0610... [more]
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BLAST of Spo03272.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RJ23_SPIOL4.7e-7100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03272.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03272.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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